BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493422
Length=1310
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14750.1 | Symbols: IQD19 | IQ-domain 19 | chr4:8470381-8472... 1890 0.0
AT1G01110.2 | Symbols: IQD18 | IQ-domain 18 | chr1:52239-54692 ... 91.6 2e-17
> AT4G14750.1 | Symbols: IQD19 | IQ-domain 19 | chr4:8470381-8472187
FORWARD LENGTH=1516
Length=1516
Score = 1890 bits (1023), Expect = 0.0
Identities = 1182/1255 (94%), Gaps = 26/1255 (2%)
Strand=Plus/Plus
Query 1 ACACACACATTACAATCTCTTCTTCTCTGACATTACACAATGGTGG--TGAGCTTTTCAA 58
||||||| || ||||||||||||||||||||||||||||||||||| |||| ||| ||
Sbjct 1 ACACACATATAACAATCTCTTCTTCTCTGACATTACACAATGGTGGTTTGAG-TTTACAG 59
Query 59 AAGACAAATAATGGGGAAAACAAGCAAATGGATTCGAAGTTTGTTAACCGGAAAGAAAGA 118
|||| ||||||||||||||| ||||||||| |||||||| | |||||||||||||||||
Sbjct 60 AAGA-TAATAATGGGGAAAACTAGCAAATGGTTTCGAAGTCTCTTAACCGGAAAGAAAGA 118
Query 119 GAGAACAAAGGAACATATTATTCAAAGCGAGTGTGGATTCACTTCCTCCATTCCAGGCAC 178
|||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||
Sbjct 119 GAGAACAAAGGAACATATCATTCAAAGCGAGTGTGTATTCACTTCTTCCATTCCAGGCAC 178
Query 179 TCCTAAAGAGAAACGTCGATGGAGTTTTCGACGTTCTTCAGCCACTGGACCA---CCACC 235
|||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 179 TCCTAAGGAGAAACGTCGATGGAGTTTTCGACGTTCTTCAGCAACTGGACCACCGCCACC 238
Query 236 AGCTTGTGCTATTAC-CTTAAAAGATTcaccgcca---ccg---ccacca---ccacctc 285
||||||||||||||| | | ||||||||||| ||| ||| |||||| |||||||
Sbjct 239 AGCTTGTGCTATTACAC-TGAAAGATTCACCACCACCGCCGCCACCACCACCTCCACCTC 297
Query 286 caccgcaaccacaaccaTTAGTGGTCGCAATCGTGGACAATGAAGATGAACAAATCAAGA 345
|||||| || ||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 298 CACCGCTACAACAACCATTTGTGGTCGAAATCGTGGACAATGAAGATGAACAAATCAAGA 357
Query 346 ACGTTTCAGGC-GAAGAGATTGAAGAATTTGCAGCAATAAAGATTCAAGCGTGCTATCGT 404
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ACGTTTCA-GCTGAAGAGATTGAAGAATTTGCAGCAATAAAGATTCAAGCGTGCTATCGT 416
Query 405 TCTCATTTGGCGAGGAAAGCATTAAGAGCATTAAAAGGGTTAGTGAAATTACAAGCACTA 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TCTCATTTGGCGAGGAAAGCATTAAGAGCATTAAAAGGGTTAGTGAAATTACAAGCACTA 476
Query 465 GTGAGAGGTCATTTAGTGAGGAAACAAGCAACAACAACACTTAGATGTATGCAAGCATTA 524
||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||
Sbjct 477 GTGAGAGGTCATTTAGTAAGGAAACAAGCAACAGCTACACTTAGATGTATGCAAGCATTA 536
Query 525 ATAACACTTCAAGCCAAAGCTCGAGAACAGAGGATTCGTATGATCGGAGGAGATTCAACA 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 ATAACACTTCAAGCCAAAGCTCGAGAACAGAGGATTCGTATGATCGGAGGAGATTCAACA 596
Query 585 AATCCAAGAACATCGATTCACAAAACCCGAATCAATAACCTTTACCAAGAGAATGAAGAA 644
||||||||||||||||||||||||||| | ||||||||| ||||||| ||||||||||||
Sbjct 597 AATCCAAGAACATCGATTCACAAAACCAGGATCAATAACTTTTACCACGAGAATGAAGAA 656
Query 645 AACATCAAGATTGTGGAAATGGACATTCAATCGAAAATGTACTCTCCGGCTCCTTCGGCT 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 AACATCAAGATTGTGGAAATGGACATTCAATCGAAAATGTACTCTCCGGCTCCTTCGGCT 716
Query 705 TTAACCGAGATGAGTCCTCGCGCATATAGTAGCCATTTCGAGGATTGTAACTCTTTCAAC 764
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 717 TTAACCGAGATGAGTCCTCGCGCGTATAGTAGCCATTTCGAGGATTGTAACTCATTCAAC 776
Query 765 ATAGCTCAAAGTAGTCCTCAATGTTTCAGCAGATTCAAAGAGTATTACAATGGAGATACT 824
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 ACAGCTCAAAGTAGTCCACAATGTTTCAGCAGATTCAAAGAGTATTACAATGGAGATACT 836
Query 825 TTGTCTTCTTATGATTACCCTCTCTTCCCAAATTACATGGCTAATACTCAGTCTTCTAAA 884
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 837 TTGTCTTCTTATGATTACCCTCTCTTCCCTAATTACATGGCTAATACTCAGTCTTCTAAA 896
Query 885 GCCAAGGCTCGGTCTCAAAGTGCGCCGAAGCAGAGACCTCCTGAGATCTATGAGAAACAG 944
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 897 GCCAAGGCTCGGTCTCAAAGTGCGCCGAAGCAGAGACCTCCTGAGATCTATGAGAAGCAG 956
Query 945 ATGAGTGGGAGGAGAAGATCTTCAATGGAAGCACCAAGGAACAACGGTGTCCCGAGAGCT 1004
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 957 ATGAGTGGGAGGAGAAGATCTTCGATGGAAGCACCGAGGAATAACGGTGTCCCGAGAGCT 1016
Query 1005 GTACGGATGCAGAGATCTTCATCTCAATTAGGGTCAAATACAGCCAAGGAAAGTCAACAA 1064
||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1017 GTAAGGATGCAGAGATCTTCATCTCAACTAGGGTCAAACACAGCCAAGGAAAGTCAACAA 1076
Query 1065 CATCAGCATCATCATCAGTATTATCCGTGGATGGCGATTAAGCTCGATAGATCTAATATA 1124
||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1077 CATCA---TCATCATCAGTACTATCCGTGGATGGCGATAAAGCTCGATAGATCTAATATT 1133
Query 1125 TCGCTTATGGAGAGCGAATGCGGATCTACTAGTACCGTTATGACTAATACCAACTACGGT 1184
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1134 TCGCTTATGGAGAGCGAATGCGGATCTACAAGTACCGTTATGACTAATACCAACTACGGT 1193
Query 1185 AGACATGTTGATGTTCAGGGAAACAGCA---TGTACTGAAAACTATGATTTAGAA 1236
||||||||||||||||||||||||| || ||||||||| ||| || |||||||
Sbjct 1194 AGACATGTTGATGTTCAGGGAAACAACAACATGTACTGAACACTGTGCTTTAGAA 1248
> AT1G01110.2 | Symbols: IQD18 | IQ-domain 18 | chr1:52239-54692
FORWARD LENGTH=1782
Length=1782
Score = 91.6 bits (49), Expect = 2e-17
Identities = 96/117 (82%), Gaps = 10/117 (9%)
Strand=Plus/Plus
Query 409 ATTTGGCGAGGAA-AGCATTAAGAGCATTAAAAGGGTTAGTGAAATTACAAGCACTAGTG 467
||||||| | ||| |||||||||||||||||||||||||||||| |||||||| | |||
Sbjct 401 ATTTGGC-AAGAAGAGCATTAAGAGCATTAAAAGGGTTAGTGAAGCTACAAGCATTGGTG 459
Query 468 AGAGGTCATT-TAGTGAGGAAA-CAAGC-AACAACAACACTTA-GATGTATGCAAGC 520
|| || ||| | ||||| ||| ||||| || || ||| ||| | |||||||||||
Sbjct 460 AGGGGACATAAT-GTGAG-AAAGCAAGCTAA-AATGACA-TTAAGGTGTATGCAAGC 512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64457499780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5