BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493423
Length=650
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14746.1 | Symbols: | CONTAINS InterPro DOMAIN/s: EGF-like ... 963 0.0
> AT4G14746.1 | Symbols: | CONTAINS InterPro DOMAIN/s: EGF-like
(InterPro:IPR006210); Has 259 Blast hits to 234 proteins in
55 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi
- 0; Plants - 69; Viruses - 0; Other Eukaryotes - 6 (source:
NCBI BLink). | chr4:8462614-8464326 REVERSE LENGTH=745
Length=745
Score = 963 bits (521), Expect = 0.0
Identities = 610/652 (94%), Gaps = 10/652 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTGTCTTAGGAACACACTCTGTCTTGTTGCAGCTTTGCTTCTGATCTACCAGAAG 60
|||||| |||||||||||||||||||||||||||| ||||| ||||||||| ||||||||
Sbjct 1 ATGGCTCGTCTTAGGAACACACTCTGTCTTGTTGCTGCTTTACTTCTGATCAACCAGAAG 60
Query 61 ACAGCTACTTGCGATTTCCTCTCTCCACTTTTCGCTCCTATGTTTGATAATATATGCAAG 120
|||||||||| ||||||||| ||||| |||||||||||| ||| ||||||||||||||||
Sbjct 61 ACAGCTACTTCCGATTTCCTTTCTCCTCTTTTCGCTCCTGTGTATGATAATATATGCAAG 120
Query 121 GAAGTGGAATGTGGGAAAGGGAAATGCAAAGCATCTTTGAACACAACTTTTATGTATGAA 180
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 121 GAAGTGGAATGTGGGAAAGGGAAATGCAAAGCACCTTCAAACACAACTTTTATGTATGAA 180
Query 181 TGTGAGTGTGAAGATGGTTGGAAGCAGTTTGATCATCACCTCAAGTTTCTCCCTTGCATC 240
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 TGTGAGTGTGAAGACGGTTGGAAGCAGTTTGATCAACACCTCAAGTTTCTCCCTTGCATC 240
Query 241 ACCCCCAACTGTACCTTTGACCTAACATGTGGGGAAGCAGCATCTCCAGCACAACCCAAA 300
|||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 241 ACCCCCAACTGTACCTTTGATCTAACATGTGGTGAAGCAGCTTCTCCAGCACAACCCAAA 300
Query 301 ACGCCTCCCAAAGACAACATTACTTCATTATTCGACGCTTGTCAATGGATGGATTGTGGA 360
|||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||
Sbjct 301 CCGCCTCCCAAAGACAACATTACTTCATTTTTCGACCCTTGTCAATGGATGGACTGTGGA 360
Query 361 GGAGGGTTTTGCAACAGTAC-A-GCAGCATTTCAATACAGCTGCAACTGCCGTGAAGGTT 418
|||||| ||||||||||| | | || | ||||||||||||||||| |||||||||||||
Sbjct 361 GGAGGGCTTTGCAACAGTTCAATGC--CGTTTCAATACAGCTGCAATTGCCGTGAAGGTT 418
Query 419 ACAGCAATCTCATGAACATAACCACATTTCCTTGCTTGAAGCAATGTGCACTTGGAATGG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ACAGCAATCTCATGAACATAACCACATTTCCTTGCTTGAAGCAATGTGCACTTGGAATGG 478
Query 479 ACTGTTTGAATCTTGGGATTCCTTTGTCAAACACATCATCGTCTTCTCCACCTGCTCTGC 538
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 479 ACTGTTTGAATCTTGGGATTCCTTTGTCAAACTCATCATCGTCTTCTCCACCTGCTCTGC 538
Query 539 CTGATAGCAGCAAGAATCAAGGATTGAATCTAAGAGGATCATCATTGTGGTGGATAACAT 598
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 539 CTGATAGCAGCAAGAATCAAGGATTAAATCTAAGAGGATCATCGTTGTGGTGGATAACAT 598
Query 599 TTATGCTATGTGTCTATTTAGCACCATGGAGGCTACTCTACATTTGATCTCT 650
| ||| | || ||| || ||| ||||||||| |||||| ||||||||||||
Sbjct 599 T-ATG-T--GTCTCT-TT-AGCGCCATGGAGGATACTCTTCATTTGATCTCT 644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31396341875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5