BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493425
Length=1661
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14740.1 | Symbols: | Plant protein of unknown function (DU... 2503 0.0
> AT4G14740.1 | Symbols: | Plant protein of unknown function (DUF828)
with plant pleckstrin homology-like region | chr4:8450289-8454028
REVERSE LENGTH=1788
Length=1788
Score = 2503 bits (1355), Expect = 0.0
Identities = 1587/1693 (94%), Gaps = 39/1693 (2%)
Strand=Plus/Plus
Query 1 ctctctctctctctGAAAATGGAAAAACCCATGGTTCCGACATGGAGACCCGACCCGGTT 60
|||||||| ||| | ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 65 CTCTCTCTTTCTTTCAAAATGGAAAAACTCATGGTTCCGACATGGAGACCCGACCCGGTT 124
Query 61 TACCGTCCACCGGAGACACCACTCGAGCCTATGGAGTTCTTAGCTCGGTCATGGAGCGTC 120
|||||||||||||| ||||||||||| || |||||||| |||||||| ||||||||||||
Sbjct 125 TACCGTCCACCGGAAACACCACTCGAACCGATGGAGTTTTTAGCTCGTTCATGGAGCGTC 184
Query 121 TCTGCTCTCGAAGTCTCCAAGGCTCTAACACCACCTAACCCTCAGATTCTCCTCTCCAAA 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 185 TCTGCTCTCGAAGTCTCCAAGGCTCTAACACCACCCAACCCTCAGATTCTCCTCTCCAAA 244
Query 181 ACC------GAAGAAGAAGAAGAACCCATCT-C-C-GCCGTAGACGGTGACGGCGACACA 231
||| |||||||||||||||||||||| | | | ||||||||| |||||||||||
Sbjct 245 ACCGAAGAAGAAGAAGAAGAAGAACCCATCTCCTCTGTCGTAGACGGCGACGGCGACACG 304
Query 232 GAAGACACCGGACTTGTCACCGGAAACCCATTCTCCTTTGCTTGTTCTGAAACATCTCAA 291
|||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 305 GAAGACACCGGACTTGTCACCGGAAACCCATTCTCCTTCGCTTGTTCAGAAACTTCTCAA 364
Query 292 ATGGTCATGGATCGTATCTTGTCTCACTCTCAAGAAGTATCACCAAGAACATCTGGTCGG 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 ATGGTCATGGATCGTATCTTGTCTCACTCTCAAGAAGTATCACCAAGAACATCTGGTCGG 424
Query 352 CTATCTCACAGTAGTGGTCCACTTAACGGTTCTTTGACCGACAGTCCTCCTGTGTCTCCT 411
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 425 CTATCTCACAGTAGTGGTCCACTTAATGGTTCTTTGACCGACAGTCCTCCTGTGTCTCCT 484
Query 412 CCCGAATCCGACGACATTAAGCAATTTTGCAGAGCAAACAACAATTCACTGAACAATATA 471
||||||||||||||||||||||||||||||||||| ||||| |||||| |||||| | ||
Sbjct 485 CCCGAATCCGACGACATTAAGCAATTTTGCAGAGCGAACAAAAATTCATTGAACAGTGTA 544
Query 472 AATTATCAGTTCCGTACAACGGCGACAACTCCGGGACCTATAACCGCCACAGCTACACAG 531
|||| |||||||||| |||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 545 AATTCTCAGTTCCGTTCAACGGCGGCAACTCCGGGACCTATAACCGCTACAGCTACACAG 604
Query 532 TCCAAGACGGTGGGACGGTGGCTTAAGGATCGGAGAGAGAAGAAGAAAGAGGAGACTCGG 591
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 605 TCCAAGACGGTGGGACGGTGGCTTAAGGACCGGAGAGAGAAAAAGAAAGAGGAGACTCGG 664
Query 592 GCTCATAATGCTCAGATTCACGCTGCTGTCTCTGTAGCCGGCGTTGCTGCAGCTGTTGCT 651
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 665 GCTCATAACGCTCAGATTCACGCTGCTGTCTCTGTCGCCGGCGTTGCTGCAGCTGTTGCT 724
Query 652 GCCATCGCAGCAGCTACGGCTGCGTCTTCTAGTTGCGGCAAGGATGAGCAGATGGCTAAA 711
|| || |||||||| || |||||||||||||| || || |||||||||||||||||||||
Sbjct 725 GCTATTGCAGCAGCCACCGCTGCGTCTTCTAGCTGTGGTAAGGATGAGCAGATGGCTAAA 784
Query 712 ACTGACATGGCGGTTGCTTCCGCTGCGACCCTTGTGGCAGCTCAGTGTGTGGAGGCTGCT 771
||||||||||| |||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 785 ACTGACATGGCCGTTGCTTCTGCTGCGACCCTTGTGGCTGCTCAGTGTGTGGAAGCTGCT 844
Query 772 GAAGTTATGGGAGCTGAGAGAGAGTATTTGGCTTCTGTTGTTAGCTCCGCCGTCAATGTT 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 GAAGTTATGGGAGCTGAGAGAGAGTATTTGGCTTCTGTTGTTAGCTCCGCCGTCAATGTT 904
Query 832 CGCTCTGCTGGAGACATCATGACTCTCACCGCCGGAGCAGCTACAGCTTTAAGAGGAGTG 891
|| ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 CGTTCTGCCGGAGATATTATGACTCTCACCGCCGGAGCAGCTACAGCTTTAAGAGGAGTG 964
Query 892 CAAACATTGAAAGCGAGGGCAATGAAGGAAGTGTGGAACATTGCATCAGTGATTCCAATG 951
||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 965 CAAACATTGAAGGCAAGGGCAATGAAGGAAGTGTGGAACATAGCATCAGTGATACCAATG 1024
Query 952 GATAAAGGACTCACTTCCACTGGAGGAAGCAGCAATAATGTTAATGGTAGCAATGGAAGT 1011
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1025 GATAAAGGACTCACTTCTACAGGAGGAAGCAGCAATAATGTTAATGGTAGCAATGGAAGC 1084
Query 1012 TCAAGCAGTAGTCACAGTGGTGAACTTGTACAACAGGAGAATTTCTTGGGAACTTGTAGC 1071
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 TCAAGCAGTAGTCACAGTGGTGAACTTGTACAACAGGAGAATTTCTTGGGAACTTGTAGT 1144
Query 1072 CGAGAATGGCTCGCTAGAGGTTGCGAACTCCTCAAACGAACTCGCAAAGGTGATCTCCAC 1131
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1145 AGAGAATGGCTCGCTAGAGGTTGTGAACTCCTCAAACGCACTCGCAAAGGTGATCTCCAC 1204
Query 1132 TGGAAGATAGTATCTGTTTACATCAACAAGATGAATCAGGTTATGTTGAAGATGAAGAGC 1191
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1205 TGGAAGATAGTATCTGTTTACATCAACAAAATGAATCAGGTTATGTTGAAGATGAAGAGC 1264
Query 1192 AGGCATGTTGGAGGAACCTTCACCAAGAAGAAAAAGAACATTGTGCTTGATGTGATCAAG 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1265 AGGCATGTTGGAGGAACCTTCACCAAGAAGAAAAAGAACATTGTGCTTGATGTGATCAAG 1324
Query 1252 AATGTCCCGGCCTGGCCTGGACGACATTTGCTAGAGGGAGGAGATGATCTTAGATACTTC 1311
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1325 AATGTCCCGGCCTGGCCTGGACGACATTTGCTAGAGGGAGGAGATGATCTAAGATACTTC 1384
Query 1312 GGTTTGAAGACGGTTATGCGAGGTGATGTTGAATTCGAGGTCAAGAGCCAAAGGGAGTAT 1371
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1385 GGTTTGAAGACGGTTATGCGAGGTGATGTTGAATTCGAGGTCAAGAGCCAAAGGGAATAT 1444
Query 1372 GAAATGTGGACACAAGGTGTGTCAAGGCTTCTTGTTCTTGCTGCTGAGAGGAAGTTTAGG 1431
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1445 GAAATGTGGACACAAGGTGTCTCAAGGCTTCTTGTTCTTGCTGCTGAGAGGAAGTTTAGG 1504
Query 1432 ATGTGAATAAATATGTTCAATGGCTGCTTGTTTTAAGTGTGAGTTTTAT---AACTTATG 1488
||||||||||| |||||||||||||||| |||||||||||||||| | ||||||||
Sbjct 1505 ATGTGAATAAAC--GTTCAATGGCTGCTTGGTTTAAGTGTGAGTTTTTTTTTAACTTATG 1562
Query 1489 TGGTCA--TTT--T-A--AGG--T------AA--T---GGTTTTTTGGGTTGGGTATAGG 1528
|||||| ||| | | ||| | || | ||||||||||||||||||||||
Sbjct 1563 TGGTCAAATTTCATTAGTAGGGGTTCTTTTAAGGTAATGGTTTTTTGGGTTGGGTATAGG 1622
Query 1529 ATAAAATGGACCTACCAGTCAAGGTGAGGGAAGGATTTGGGTAAACAAAACTTAGTGGGG 1588
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1623 ATAAAATGGACCTACCAGTCAAGGTGAGG-AAGCATTTGGGTAAACAAAACTTAGTGGGG 1681
Query 1589 GTGGTGATCTGTAATTTCTATGTTCTTAgttttttgttttgttgttggtggtctttttgt 1648
||| ||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1682 GTG---ATCTGTAATATCTATGTTCTTAGTTTTTT-TTTGGTTGTTGGTGGTCTTTTTGT 1737
Query 1649 ATaaaaaaaaaaa 1661
||||||||| |||
Sbjct 1738 ATAAAAAAACAAA 1750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82077891075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5