BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493427
Length=745
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14723.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 1151 0.0
> AT4G14723.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: allergen-related (TAIR:AT3G22820.1); Has 35333 Blast
hits to 34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:8439899-8440839
FORWARD LENGTH=744
Length=744
Score = 1151 bits (623), Expect = 0.0
Identities = 710/750 (95%), Gaps = 13/750 (2%)
Strand=Plus/Plus
Query 1 aaaaaaaaaaaaaaaaaGAGATAGCAATTTGAATTTAATACTTGGATTCCAAATCCAAGC 60
||| |||| ||||| |||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 3 AAAGAAAACAAAAACAAGACATAGCAATTTGAATTTAATATTTGGATTCCAAATCCAAGC 62
Query 61 TCATGGGTCTATTCTACTGTTCACAGTCACACACACACTCTCTCTATCTAAGCTTCTTTT 120
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 63 TCATGGGTCTATTCTACTGTTCACAGTCACACACACA--CTCTCTATCTAAGCTTCTTTT 120
Query 121 GACTTAAGACCAAAATGAATaaccccaaaccccaaacactcaaacataaacccaaaaaat 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 GACTTAAGACCAAAATGAATAACCCCAAACCTCAAACACTCAAACATAAACCCAAAAAAT 180
Query 181 ctctctcacagagaaaaataaaacacacCATTTTAACCACAACACTTGTCTCTCTGCTAA 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 181 CTCTCTCACAGAGAAAAATAAAACACACAATTTTAACCACAACACTTGTCTCTCTGCTAA 240
Query 241 CGTACGCATCCT-TGCCGGTTCTTGACTAATGGGCGCCTTCCGTCGCCGCCGCCGTCACT 299
| |||||||||| | |||||||||||||||||||| |||||||| |||||||||| ||
Sbjct 241 CATACGCATCCTCT-CCGGTTCTTGACTAATGGGCACCTTCCGT---CGCCGCCGTCGCT 296
Query 300 TTCTTTTAGCTTCACTCGCCGCATTTGCTCTCCTCCACCTCTTCTCCGCCTCCTTCGTAG 359
||||||||||| |||||| | ||||||||||||||||||||||||||||||||| | |||
Sbjct 297 TTCTTTTAGCTGCACTCGTCACATTTGCTCTCCTCCACCTCTTCTCCGCCTCCTCCATAG 356
Query 360 TCTCCGCCGATGGTAGATGGATTGGTCAGAGAACCGGGTCGGATTTACCGGGTGGGTTCG 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TCTCCGCCGATGGTAGATGGATTGGTCAGAGAACCGGGTCGGATTTACCGGGTGGGTTCA 416
Query 420 TGGA-GAATAATAAGAGGTTTGGTGGTCCGGGTTCATCACCACCGACGTGCAGATCGAAG 478
| | || ||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 417 T-AAGGAGTAATAAGCGGTTTGGTGGTCCGGGTTCATCACCACCGACGTGTAGATCGAAG 475
Query 479 TGTGGGAAATGTCAGCCGTGTAAACCGGTTCACGTACCGATTCAACCCGGTTTAAGTATG 538
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 476 TGTGGGAAATGTCAGCCGTGTAAACCGGTTCACGTACCAATTCAACCCGGTTTAAGTATG 535
Query 539 CCATTGGAGTATTACCCTGAAGCTTGGCGGTGCAAGTGTGGCAACAAGCTCTTCATGCCC 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CCATTGGAGTATTACCCTGAAGCTTGGCGGTGCAAGTGTGGCAACAAGCTCTTCATGCCC 595
Query 599 TAAACTTTGATCAATGATTAAACAATTCACG--Gaa-aaaaaaaGTGTTTTAATTCtttt 655
|||| |||||||||| ||||||||||||| | ||| ||||||| |||||||||||||||
Sbjct 596 TAAAGTTTGATCAATTATTAAACAATTCA-GAAGAAGAAAAAAAATGTTTTAATTCTTTT 654
Query 656 tgttttgttttttGTTCCTCATTTCTTGTGCTTGTCTGATTAATTATTGTAATGAAATCT 715
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 655 TGTTTTGTTTTTTGTTCCTCATTTCTTGTGCTTCTCTGATTAATTATTGTAATGAAAACT 714
Query 716 ATATGTTAATATaaaaaaaTTGGTCATGTG 745
|||||||||||| |||||||||||||||||
Sbjct 715 ATATGTTAATATTAAAAAATTGGTCATGTG 744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36168585840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5