BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493429
Length=820
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14716.1 | Symbols: ATARD1, ARD1 | acireductone dioxygenase ... 1262 0.0
AT4G14710.5 | Symbols: ATARD2 | RmlC-like cupins superfamily pr... 894 0.0
AT2G26400.1 | Symbols: ARD, ATARD3, ARD3 | acireductone dioxyge... 667 0.0
> AT4G14716.1 | Symbols: ATARD1, ARD1 | acireductone dioxygenase
1 | chr4:8430207-8431945 REVERSE LENGTH=934
Length=934
Score = 1262 bits (683), Expect = 0.0
Identities = 777/822 (95%), Gaps = 7/822 (1%)
Strand=Plus/Plus
Query 1 CATAACGAGGAAGACGATGGGTGAAGCGGTCAAGGATGGAAGAGAAGAAGTGATTCAGGC 60
||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 63 CATCACGAGGAACACGATGGGTGAAGCGGTCAAGGATGGGAGAGAAGAAGTGATTCAAGC 122
Query 61 TTGGTATATGGATGATAGTGAAGAGGATCAGAGACTTCCTCACCATAAGGATCCTAAAGA 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 123 TTGGTATATGGATGATAGTGAAGAGGATCAGAGACTTCCTCACCACAAGGATCCTAAAGA 182
Query 121 GTTTGTATCTTTGGACAAACTTGCAGAGCTGGGAGTACTTAGCTGGAGACTTGATGCTGA 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 GTTTGTATCGTTGGACAAACTTGCAGAGCTGGGAGTACTTAGCTGGAGACTTGATGCTGA 242
Query 181 TAACTATGAAACCGATGAGGATTTGAAAAAGATCCGCGAATCCCGTGGCTACTCTTACAT 240
|||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 243 TAACTATGAAACCGATGAGGATTTGAAAAAGATCCGTGAATCTCGTGGTTACTCTTACAT 302
Query 241 GGACTTTTGTGAGGTATGCCCGGAAAAGCTTCCAAACTATGAAGTGAAAGTAAAGAGCTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 303 GGACTTTTGTGAGGTATGCCCGGAAAAGCTTCCAAACTATGAAGTGAAAGTGAAGAGCTT 362
Query 301 TTTCGAAGAACATTTGCACACTGATGAAGAGATCCGTTACTGCGTTGCAGGAAGC-GGTT 359
||||||||||||||| ||||||||||| ||||||||||||||||||||||||| | ||||
Sbjct 363 TTTCGAAGAACATTTACACACTGATGAGGAGATCCGTTACTGCGTTGCAGGAA-CTGGTT 421
Query 360 ACTTTGATGTGAGGGATCGCAATGAAGCTTGGATTAGAGTATGGGTAAAGAAGGGAGGTA 419
||||||||||||| ||||| ||||||||||||||||| |||| |||||||||||||||||
Sbjct 422 ACTTTGATGTGAGAGATCGTAATGAAGCTTGGATTAGGGTATTGGTAAAGAAGGGAGGTA 481
Query 420 TGATAGTCTTACCTGCTGGAATATATCACCGCTTCACTGTGGACTCAGACAACTATATCA 479
||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||
Sbjct 482 TGATAGTCTTACCTGCTGGGATCTATCATCGCTTCACTGTGGACTCTGACAACTATATCA 541
Query 480 AGGCAATGCGGCTTTTCGTGGGTGAACCGGTGTGGACACCATACAATCGGCCACACGACC 539
||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 542 AGGCAATGCGGCTATTCGTGGGTGAACCGGTATGGACACCATACAATCGCCCACACGACC 601
Query 540 ATCTTCCTGCAAGGAAAGAATACGTCGATAACTTCATGATCAACGCCTCCGCTTAGAGAG 599
|||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 602 ATCTTCCTGCAAGGAAAGAATATGTCGATAACTTCATGATCAATGCCTCGGCTTAGAGAG 661
Query 600 ctctctctctctctctATCTGGCTTTCTGAAATCA-GGATCTATAAAAAAGGCCTACAAT 658
|| || |||||||| ||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct 662 CT-TC-CTCTCTCTATATCTGGCTTTCTGAAA-CAAGGATCTATAAACAAGGCCTACAAT 718
Query 659 AAAGAAAGCTTTCCTCTCAAGTATTGGATATTTATATGTATGCATGTGGAGAATGCTAGC 718
||||||||||||||| ||||||||||||||||||||||||| | |||| |||||| | ||
Sbjct 719 AAAGAAAGCTTTCCTGTCAAGTATTGGATATTTATATGTATTCCTGTGTAGAATGATGGC 778
Query 719 TTTTGGTATGCTTGAGGTGTTGTAAACTTAGTTACACTCTCTGATATGTCTCTCTTTACC 778
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TTTTGGTATGCTTGAGTTGTTGTAAACTTAGTTACACTCTCTGATATGTCTCTCTTTACC 838
Query 779 ATCTTTGTCGTATCCGAATATACGAAAAGACTACAGTGGGAT 820
||||||||||||||| | |||||||||||| |||| ||||||
Sbjct 839 ATCTTTGTCGTATCCCA-TATACGAAAAGATTACATTGGGAT 879
> AT4G14710.5 | Symbols: ATARD2 | RmlC-like cupins superfamily
protein | chr4:8424703-8426471 REVERSE LENGTH=1030
Length=1030
Score = 894 bits (484), Expect = 0.0
Identities = 524/544 (96%), Gaps = 0/544 (0%)
Strand=Plus/Plus
Query 35 GATGGAAGAGAAGAAGTGATTCAGGCTTGGTATATGGATGATAGTGAAGAGGATCAGAGA 94
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 255 GATGGAAGAGAAGAAGTGATCCAGGCATGGTATATGGATGATAGCGAAGAGGATCAGAGA 314
Query 95 CTTCCTCACCATAAGGATCCTAAAGAGTTTGTATCTTTGGACAAACTTGCAGAGCTGGGA 154
||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 315 CTTCCTCACCACAAGGATCCTAAGGAGTTTCTATCTTTGGACAAACTTGCAGAGCTGGGA 374
Query 155 GTACTTAGCTGGAGACTTGATGCTGATAACTATGAAACCGATGAGGATTTGAAAAAGATC 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 GTACTTAGCTGGAGACTTGATGCTGATAACTATGAAACCGATGAGGATTTGAAAAAGATC 434
Query 215 CGCGAATCCCGTGGCTACTCTTACATGGACTTTTGTGAGGTATGCCCGGAAAAGCTTCCA 274
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 CGCGAATCTCGTGGTTACTCTTACATGGACTTTTGTGAGGTATGCCCGGAAAAGCTTCCA 494
Query 275 AACTATGAAGTGAAAGTAAAGAGCTTTTTCGAAGAACATTTGCACACTGATGAAGAGATC 334
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 AACTATGAAGTGAAAGTGAAGAGCTTTTTCGAAGAACATTTGCACACTGATGAAGAGATC 554
Query 335 CGTTACTGCGTTGCAGGAAGCGGTTACTTTGATGTGAGGGATCGCAATGAAGCTTGGATT 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 CGTTACTGCGTTGCAGGAAGCGGTTACTTTGATGTGAGGGATCGCAATGAAGCTTGGATT 614
Query 395 AGAGTATGGGTAAAGAAGGGAGGTATGATAGTCTTACCTGCTGGAATATATCACCGCTTC 454
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 615 AGAGTATGGGTAAAGAAGGGAGGTATGATAGTCTTACCTGCTGGAATATATCATCGCTTC 674
Query 455 ACTGTGGACTCAGACAACTATATCAAGGCAATGCGGCTTTTCGTGGGTGAACCGGTGTGG 514
|| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 675 ACCGTAGACTCAGACAACTATATCAAGGCAATGCGGCTTTTCGTGGGTGAACCGGTCTGG 734
Query 515 ACACCATACAATCGGCCACACGACCATCTTCCTGCAAGGAAAGAATACGTCGATAACTTC 574
|||||||||||||| ||||||||||| || |||||||||||||| ||| ||||||| |||
Sbjct 735 ACACCATACAATCGCCCACACGACCACCTCCCTGCAAGGAAAGAGTACATCGATAATTTC 794
Query 575 ATGA 578
|||
Sbjct 795 GTGA 798
> AT2G26400.1 | Symbols: ARD, ATARD3, ARD3 | acireductone dioxygenase
3 | chr2:11231800-11233295 REVERSE LENGTH=879
Length=879
Score = 667 bits (361), Expect = 0.0
Identities = 486/546 (89%), Gaps = 10/546 (2%)
Strand=Plus/Plus
Query 17 ATGGGTGAAG-CGGTCAAGGATGGAAGAGAAGAAGTGATTCAGGCTTGGTA-TATGGATG 74
|||||||||| || | |||||| || |||||||||||||| |||||||| | |||||
Sbjct 22 ATGGGTGAAGCCGCT-AAGGATCAAACTGAAGAAGTGATTCAAGCTTGGTACT-TGGATA 79
Query 75 AT-AGTGAAGAGGATCAGAGACTTCCTCACCATAAGGATCCTAAAGAGTTTGTATCTTTG 133
|| || ||||||||||||| |||||||||||| ||||||||||| || ||||||||||||
Sbjct 80 ATAAG-GAAGAGGATCAGAAACTTCCTCACCACAAGGATCCTAAGGAATTTGTATCTTTG 138
Query 134 GACAAACTTGCAGAGCTGGGAGTACTTAGCTGGAGACTTGATGCTGATAACTATGAAACC 193
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 139 GACAAACTTGCAGAGCTTGGAGTACTTTGCTGGAGACTTGATGCTGATAACTATGAAACC 198
Query 194 GATGAGGATTTGAAAAAGATCCGCGAATCCCGTGGCTACTCTTACATGGACTTTTGTGAG 253
|||||||| ||||||| |||||||||||| ||||| ||||| ||||||||||| ||||||
Sbjct 199 GATGAGGAATTGAAAAGGATCCGCGAATCTCGTGGTTACTCCTACATGGACTTATGTGAG 258
Query 254 GTATGCCCGGAAAAGCTTCCAAACTATGAAGTGAAAGTAAAGA-GCTTTTTCGAAGAACA 312
|| || || || ||||||||||||||||||| |||||||||| | ||||| ||||||||
Sbjct 259 GTGTGTCCAGAGAAGCTTCCAAACTATGAAGAAAAAGTAAAGATGTTTTTT-GAAGAACA 317
Query 313 TTTGCACACTGATGAAGAGATCCGTTACTGCGTTGCAGGAAGCGGTTACTTTGATGTGAG 372
||| || | |||||||||||||||||||||| | |||||||| || ||||||||||||||
Sbjct 318 TTTACATATTGATGAAGAGATCCGTTACTGCCTCGCAGGAAGTGGATACTTTGATGTGAG 377
Query 373 GGATCGCAATGA-AGCTTGGATTAGAGTATGGGTAAAGAAGGGAGGTATGATAGTCTTAC 431
||||| |||||| | ||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 378 GGATCTCAATGATAT-TTGGATTAGAGTATGGGTAAAGAAGGGAGGTTTGATAGTCTTCC 436
Query 432 CTGCTGGAATATATCACCGCTTCACTGTGGACTCAGACAACTATATCAAGGCAATGCGGC 491
|||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||| |
Sbjct 437 CTGCTGGAATATATCATCGCTTCACCGTGGACTCGGACAACTATATGAAGGCAATGCGTC 496
Query 492 TTTTCGTGGGTGAACCGGTGTGGACACCATACAATCGGCCACACGACCATCTTCCTGCAA 551
|||||||||||| ||| |||||||| | || ||||| ||||| ||||||||||||||||
Sbjct 497 TTTTCGTGGGTGGACCAGTGTGGACTGCTTATAATCGCCCACATGACCATCTTCCTGCAA 556
Query 552 GGAAAG 557
||||||
Sbjct 557 GGAAAG 562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39936146865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5