BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493434
Length=1350
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14713.1 | Symbols: PPD1, TIFY4A | TIFY domain/Divergent CCT... 1424 0.0
AT4G14720.1 | Symbols: PPD2, TIFY4B | TIFY domain/Divergent CCT... 905 0.0
> AT4G14713.1 | Symbols: PPD1, TIFY4A | TIFY domain/Divergent CCT
motif family protein | chr4:8426710-8429647 REVERSE LENGTH=1438
Length=1438
Score = 1424 bits (771), Expect = 0.0
Identities = 1226/1427 (86%), Gaps = 106/1427 (7%)
Strand=Plus/Plus
Query 1 ctctctctctctctTCACTGCTCCGCTTTCTCTCATTGTTCCTAATTTTACCCCCAAATC 60
||| ||||||||| ||||| |||||| ||||||||| |||||||||||||||||||| |
Sbjct 4 CTCACTCTCTCTCGCCACTGTTCCGCTCTCTCTCATTCTTCCTAATTTTACCCCCAAAAC 63
Query 61 CTCCAATTATTACTGAAACGCCACTGCTCTCTCGCCGGGATTCCGGTGAAGAGGAGGAGA 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 CTCCGATTATTACTGAAACGCCACTGCTCTCTCGCCGGGATTCCGGTGAAGAGGAGGAGA 123
Query 121 TGGATGTCGGAGTTTCGTCGGCGAAGTCTATACTTGCGAAGCCACTGAAGCTACTCACTG 180
|||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||
Sbjct 124 TGGATGTCGGAGTTTCACCGGCGAAGTCTATACTTGCGAAACCTCTGAAGCTACTCACTG 183
Query 181 AAGAAGACATTTCTCAGCTCACTCGCGAAGACTGCCGTAAATTCCTCAAAGACAAAGGAA 240
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 184 AAGAGGACATTTCTCAGCTCACTCGCGAAGACTGCCGCAAATTCCTCAAAGACAAAGGAA 243
Query 241 TGCGAAGGCCTTCTTGGAACAAATCTCAGGCGATCCAGCAAGTTTTATCCCTCAAAGCTC 300
||||||| || || ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 244 TGCGAAGACCGTCGTGGAACAAATCTCAGGCGATCCAGCAAGTTTTATCTCTTAAAGCTC 303
Query 301 TCTTTGAGCCCGGTGACGATTCCGGCGCCGGTATCCTCCGCAAGATCCACGTTTCTCAGC 360
||| |||||| || ||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 304 TCTATGAGCCTGGAGACGATTCCGGCGCCGGTATCTTCCGCAAGATCCTCGTTTCTCAGC 363
Query 361 CGGCAAATCCGCCTCGCGTTACAACAAC------T---------AACGAGCTTGG-AGAG 404
| | ||||||||||||||| |||||||| | ||||||| ||| ||
Sbjct 364 CAGTAAATCCGCCTCGCGTCACAACAACGTTGATTGAGCCAAGCAACGAGC-TGGAAGCT 422
Query 405 TGTGGCCGGAATCCTTTTCAGGAAGATGACGGCCCATGCCACAG-ATGGGATTCTCCAAA 463
||||||||| | ||| || ||||||| ||||| | ||||| || || |||||||||||
Sbjct 423 TGTGGCCGGGTTTCTTATCCGGAAGATAACGGCGCGTGCCATAGAAT-GGATTCTCCAAG 481
Query 464 ATCAGCTGAGTTTTCCGGCGGTTCTGCTCA----GTAT----G-CAG-CGG--AGAA-A- 509
|||||||||||||||||| || |||| ||| |||| | || || | || |
Sbjct 482 ATCAGCTGAGTTTTCCGGTGGGTCTGGTCACTTTGTATCCGAGAAAGATGGCCACAAGAC 541
Query 510 GA-TA--CCT-GCAGAAGCCCAGCTGAAACGAGTGCGCTGGTTGGGCAAATGGCGATTTT 565
|| || || |||||||||||||||||| |||| ||| |||||||||||| |||| ||
Sbjct 542 GACTATTTCTCCCAGAAGCCCAGCTGAAACAAGTGAGCTCGTTGGGCAAATGACGATATT 601
Query 566 CTATAGTGGCAAAA-TGAATGTGTATGATGGAGTACCACCTGAAAAGGCCCGGTCAATTA 624
||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 602 CTATAGTGG-AAAAGTGAATGTGTATGATGGAATACCACCTGAAAAGGCCCGGTCAATCA 660
Query 625 TGCACTTTGCAGCCAATCCAATTGATTTGCCTGAAAATGGTATTTTTGCTTCGAGTAGAA 684
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 661 TGCACTTTGCAGCCAATCCAATTGATTTGCCTGAAAACGGTATTTTTGCTTCCAGTAGAA 720
Query 685 TGATTTCAAAGCGCATAAGTAAAGAGAAGATGGTGGAACTTCCCCAAAATGGCCTTGAGA 744
|||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 721 TGATTTCAAAGCTCATAAGTAAAGAGAAGATGATGGAACTTCCCCAAAAAGGCCTTGAGA 780
Query 745 AGGCGAATTTTTCTCGTGTTTCTGATATGGAGGGTCAGGCGAACAGAAAGGTGTCTTTGC 804
||||||||| |||||||| ||||| ||||||||| ||||||||||||||||| |||||||
Sbjct 781 AGGCGAATTCTTCTCGTGATTCTGGTATGGAGGGCCAGGCGAACAGAAAGGTATCTTTGC 840
Query 805 AAAGATATCGTGAAAAGCGGAAAGACAGAAAATTCTCAAAGGCCAAAAAGTGTCCAGGAG 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AAAGATATCGTGAAAAGCGGAAAGACAGAAAATTCTCAAAGGCCAAAAAGTGTCCAGGAG 900
Query 865 TTGCGTCCTCTAGCTTGGAGATGTTTCTGAATCGTCAGCCACGGATGAACGCTGCATATT 924
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 901 TTGCGTCCTCTAGCTTGGAGATGTTTCTGAATTGTCAGCCACGGATGAAAGCTGCATATT 960
Query 925 CACAAAACCTTGGCTGCACAGGATTTCCACTGCAAAGCGAGTCACCTGAAAACCAGACAA 984
| |||||||| |||||||| |||| ||||||||| ||| |||||||||||| ||||||||
Sbjct 961 CGCAAAACCTAGGCTGCACCGGATCTCCACTGCATAGCCAGTCACCTGAAAGCCAGACAA 1020
Query 985 AAAGTCCCAATCTTTCAGTTGATCTAAACAGTGAAGG--T--AAGAAGAGAATC-ATA-- 1037
||||||||||||||||||||||||||||||||||||| | || |||| | | | |
Sbjct 1021 AAAGTCCCAATCTTTCAGTTGATCTAAACAGTGAAGGCATTTAACAAGATAC-CGAAACG 1079
Query 1038 TGGAGA-GCTTT--G-T-TAAAATAG---TT-AAACAAGATGCC-GAAACGTGGAGATGC 1087
|||||| ||| | | | | || ||| || ||||| | ||| | | || | | ||
Sbjct 1080 TGGAGATGCTATAAGCTGTGAA-TAGGCGTTGAAACA-GTTGCTTG---CTTGTA-A-GC 1132
Query 1088 T-ATAAGATATGAAGAAA-----CCTCTCTT----TC----TT-TT--GTGTTTCCGGG- 1129
| | |||||||||||||| |||||||| || || || |||||||||||
Sbjct 1133 TCA-AAGATATGAAGAAAAGAAACCTCTCTTCGGATCGGCCTTCTTTTGTGTTTCCGGGG 1191
Query 1130 TT--GCACCCATAATTTTTTGTCTATAGTTTTGAGTAG--CTTAGTAGGTTAGTGGTAAG 1185
|| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1192 TTTTGCACCCATAATTTTTGGTCTATAGTTTTGAGTAGAGCTTAGTAGGTTAGTGGTAAT 1251
Query 1186 TTCTTGTGTTTCT-ATTCTTTTTGGCGAGGATATAGTCACAGAGATTAGAGACAAGATAG 1244
||||||| || || |||||||||| ||||||||||||||||||| ||||||||||| ||
Sbjct 1252 TTCTTGT-TT-CTGATTCTTTTTGT-GAGGATATAGTCACAGAGAGTAGAGACAAGAGAG 1308
Query 1245 GGAAAAGATGAAAGAAGATCTTTCATTTTCT-GGTTTTGTTTATGTGTAAATGCTGTCTT 1303
| ||||||||| |||||||||||| ||| |||| ||||||||||| ||||||
Sbjct 1309 G-------TGAAAGAAGGGCTTTCATTTTCTAGGTGTTGTA-ATGTGTAAATGATGTCTT 1360
Query 1304 ATTTGACACACTTTTAACgagagagagagaCCTTTTAGCCAAACTGT 1350
| ||||||| ||||||||||||||| ||||||||||||| |||
Sbjct 1361 ACTTGACAC--TTTTAACGAGAGAGA----CCTTTTAGCCAAAGTGT 1401
> AT4G14720.1 | Symbols: PPD2, TIFY4B | TIFY domain/Divergent CCT
motif family protein | chr4:8431973-8435075 REVERSE LENGTH=1568
Length=1568
Score = 905 bits (490), Expect = 0.0
Identities = 803/945 (85%), Gaps = 57/945 (6%)
Strand=Plus/Plus
Query 116 GGAGATGGATGTCGGAGTTTCGT-CGGCGAAGTCTATACTTGCGAAGCCACTGAAGCTAC 174
||| |||||||| |||||| | | |||||||||||||||||| |||||| |||||||| |
Sbjct 138 GGATATGGATGTAGGAGTTAC-TACGGCGAAGTCTATACTTGAGAAGCCTCTGAAGCTTC 196
Query 175 TCACTGAAGAAGACATTTCTCAGCTCACTCGCGAAGACTGCCGTAAATTCCTCAAAGACA 234
||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| |
Sbjct 197 TCACTGAAGAAGACATTTCTCAGCTTACTCGCGAAGATTGCCGCAAATTCCTCAAAGAGA 256
Query 235 AAGGAATGCGAAGGCCTTCTTGGAACAAATCTCAGGCGATCCAGCAAGTTTTATCCCTCA 294
|||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| || |
Sbjct 257 AAGGAATGCGCAGGCCTTCGTGGAATAAATCTCAGGCGATCCAGCAAGTTTTATCTCTTA 316
Query 295 AAGCTCTCTTTGAGCCCGGTGACGATTCCGGCGCCGGTATCCTCCGCAAGATCCACGTTT 354
||||||||| ||| || || || |||||||||||||| |||||||||||||||| ||||
Sbjct 317 AAGCTCTCTATGAACCTGGAGATGATTCCGGCGCCGGAATCCTCCGCAAGATCCTTGTTT 376
Query 355 CTCAGCCGGCAAATCCGCCTCGCGTTACAACAAC------T---------AACGAGCTTG 399
|||||||| ||||||||||||||||||||||||| | |||||||| |
Sbjct 377 CTCAGCCGCCAAATCCGCCTCGCGTTACAACAACGTTGATTGAGCCAAGGAACGAGCTCG 436
Query 400 GAGAGTGTGGCCGGAATCCTTTTCAGGAAGATGACGGCCCATGCCACAGATGGGATTCTC 459
|| ||||| ||| |||||| ||||||||||| || | ||||| ||| |||||||||
Sbjct 437 AAGCTTGTGGAAGGATTCCTTTACAGGAAGATGATGGTGCGTGCCATAGAAGGGATTCTC 496
Query 460 CAAAATCAGCTGAGTTTTCCGGCGGTTCTGCTCAGTATGCAGCGGAGAAAGAT------- 512
||| ||||||||||||||| || |||||| ||||| || ||||| ||||||
Sbjct 497 CAAGATCAGCTGAGTTTTCTGGTAGTTCTGGTCAGTTTGTTGCGGATAAAGATAGCCACA 556
Query 513 --AC-----CTG-------CAGAAGCCCAGCTGAAACGAGTGCGCTGGTTGGGCAAATGG 558
|| ||| |||||||||||||||||| | |||| ||||||||||||||
Sbjct 557 AGACTGTTTCTGTTTCCCCCAGAAGCCCAGCTGAAACAAATGCGGTGGTTGGGCAAATGA 616
Query 559 CGAT-TTTCTATAGTGGCAAAATGAATGTGTATGATGGAGTACCACCTGAAAAGGCCCGG 617
|||| ||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 617 CGATATTT-TATAGTGGCAAAGTGAATGTATATGATGGAGTACCACCTGAAAAGGCCCGG 675
Query 618 TCAATTATGCACTTTGCAGCCAATCCAATTGATTTGCCTGAAAATGGTATTTTTGCTTCG 677
|| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 TCTATCATGCATTTTGCAGCCAATCCAATTGATTTGCCTGAAAATGGTATTTTTGCTTCT 735
Query 678 AGTAGAATGATTTC-AAAGCGCATAAGTAAAGAGAAGATGGTGGAACTTCCCCAAAATGG 736
|||||||||||||| ||| | ||| |||||||||||||||||||| ||||||||| ||||
Sbjct 736 AGTAGAATGATTTCGAAA-CCCATGAGTAAAGAGAAGATGGTGGAGCTTCCCCAATATGG 794
Query 737 CCTTGAGAAGGCGA-ATTTTTCTCGTGTTTCTGATATGGAGGGTCAGGCGAACAGAAAGG 795
||||| ||||| | | |||||||| ||||||| | |||||||||||||||||||| |
Sbjct 795 ACTTGAAAAGGC-ACCTGCTTCTCGTGATTCTGATGTTGAGGGTCAGGCGAACAGAAAAG 853
Query 796 TGTCTTTGCAAAGATATCGTGAAAAGCGGAAAGACAGAAAATTCTCAAAGGCCAAAAAGT 855
| || ||||||||||||| |||||||||||||||||||| ||| || ||| |||| |||
Sbjct 854 TATCGTTGCAAAGATATCTTGAAAAGCGGAAAGACAGAAGATTTTCTAAGACCAAGAAG- 912
Query 856 G-TCCAGGAGTTGCGTCCTCTAGCTTGGAGATGTTTCTGAATCGTCAGCCACGGATGAAC 914
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 GCTCCAGGAGTTGCGTCCTCTAGCTTGGAGATGTTTCTGAATCGTCAGCCACGGATGAAC 972
Query 915 GCTGCATATTCACAAAACCTTGGCTG-CACAGGATTTCCACTGCAAAGCGAGTCACCTGA 973
||||||||||||||||||||| | || |||||| | | ||| | ||||||||||
Sbjct 973 GCTGCATATTCACAAAACCTTAG-TGGCACAGGG---C-ATTGC---G--AGTCACCTGA 1022
Query 974 AAACCAGACAAAAAGTCCCAATCTTTCAGTTGATCTAAACAGTGA 1018
||| || ||||||||||||||| | ||||||||||||||||||||
Sbjct 1023 AAATCAAACAAAAAGTCCCAATATCTCAGTTGATCTAAACAGTGA 1067
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66465521580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5