BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493438
Length=1590
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14680.1 | Symbols: APS3 | Pseudouridine synthase/archaeosin... 2322 0.0
AT3G22890.1 | Symbols: APS1 | ATP sulfurylase 1 | chr3:8112723-... 1158 0.0
> AT4G14680.1 | Symbols: APS3 | Pseudouridine synthase/archaeosine
transglycosylase-like family protein | chr4:8413288-8415391
REVERSE LENGTH=1633
Length=1633
Score = 2322 bits (1257), Expect = 0.0
Identities = 1490/1599 (93%), Gaps = 30/1599 (2%)
Strand=Plus/Plus
Query 1 TTTTTGGCTTTCGATTCTCCTCCTTCAATGGCTTCCATGTCCACCGTCTTCCCCAAATCA 60
||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 54 TTTTTTGTTTTCGATTCTCCTTCTTCAATGGCTTCCATGTCCACCGTCTTCCCCAAACCA 113
Query 61 ACCTCTTTCCTCTCTCAACCTCTCACCAAAA-CCCACAAATCCAATTCCATAACCACATC 119
||||||||| ||||||||||||| | ||||| | ||||||||| ||||| ||||||||||
Sbjct 114 ACCTCTTTCATCTCTCAACCTCT-AACAAAATCTCACAAATCCGATTCCGTAACCACATC 172
Query 120 CATTTCATTCCCTTCGTATTCAAGAAAC-CGTAACCTAACAACCCTC-CGTGTACGAGCT 177
|||||||||||||||| |||| | |||| |||| | ||| |||| || | ||||||||||
Sbjct 173 CATTTCATTCCCTTCGAATTCGA-AAACTCGTAGCTTAAGAACCATCTC-TGTACGAGCT 230
Query 178 GGCTTAATCGAGCCAGATGGTGGGAAACTTGTAGATCTTGTTGTATCGGAGCC-ACGACG 236
|||||||||||||||||||||||||||||||| |||||||||||| |||| || | ||||
Sbjct 231 GGCTTAATCGAGCCAGATGGTGGGAAACTTGTGGATCTTGTTGTACCGGAACCGA-GACG 289
Query 237 GCGAGAGAAGAAACACGAAGCGGCGGATTTGCCGAAAGTGAGATTGACGGCGATTGATTT 296
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 290 GCGAGAGAAGAAACACGAAGCGGCGGATTTGCCGAGAGTGAGATTGACGGCGATTGATTT 349
Query 297 GCAATGGATGCATGTATTGAGTGAAGGTTGGGCTAGTCCTCTTCGAGGGTTTATGAGGGA 356
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 350 GCAATGGATGCATGTGTTGAGTGAAGGTTGGGCTAGTCCTCTTCGTGGGTTTATGAGGGA 409
Query 357 ATCTGAGTTCCTCCAAACTCTTCATTTCAATTTGCTCAATCTTGATGATGGATCTGTTGT 416
|||||||||||||||||||||||||||||||||| | ||||| |||||||| ||||||||
Sbjct 410 ATCTGAGTTCCTCCAAACTCTTCATTTCAATTTGTTGAATCTCGATGATGGGTCTGTTGT 469
Query 417 TAATATGTCTGTGCCTATTGTTCTTGCGATTGATGATCAACAAAAAGCCCTAATTGGTGA 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 470 TAATATGTCTGTGCCTATTGTTCTTGCGATTGATGATCAACAAAAAGCCCTAATCGGTGA 529
Query 477 ATCGAAACGTGTCTCTCTTGTTGATTCTGATGATAATCCAATCGCTATTCTCAATGATAT 536
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 ATCTAAACGTGTCTCCCTTGTTGATTCTGATGATAATCCAATCGCTATTCTCAATGATAT 589
Query 537 TGAGATTTATAAACATCCGAAAGAGGAACGGATTGCGAGAACTTGGGGTACGACTGCACC 596
|||||||||||||||||||||||| || || || ||||||||||||||||||||||||||
Sbjct 590 TGAGATTTATAAACATCCGAAAGAAGAGCGAATAGCGAGAACTTGGGGTACGACTGCACC 649
Query 597 GGGTTTGCCTTATGTAGAAGAGGCGATAACCAATGCTGGAAACTGGCTCATTGGTGGTGA 656
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 650 GGGTTTGCCTTATGTAGAAGAGGCGATAACCAATGCTGGAGACTGGCTCATTGGGGGTGA 709
Query 657 TCTTGAGGTTTTAGAACCTGTTAAGTACAATGATGGGCTTGATCGTTTCAGGCTTTCGCC 716
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 710 TCTTGAGGTTTTGGAACCTGTTAAGTACAATGATGGGCTTGATCGTTTCAGGCTTTCCCC 769
Query 717 GTTTGAACTGCGTAAGGAGCTAGAGAAGCGTGGCGCGGATGCTGTCTTTGCGTTCCAGCT 776
||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||||
Sbjct 770 GTTTGAACTGCGTAAGGAGCTAGAGAAACGTGGTGCGGATGCGGTCTTTGCGTTTCAGCT 829
Query 777 TAGGAACCCGGTTCATAATGGACATGCTCTTCTTATGACTGATACTCGTAGGAGACTTCT 836
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 TAGGAACCCAGTTCATAATGGACATGCTCTTCTTATGACTGATACTCGTAGGAGACTTCT 889
Query 837 TGAGATGGGTTATCAAAACCCAATCCTTTTGCTTCATCCATTGGGAGGGTTTACGAAAGC 896
||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 890 TGAGATGGGTTATAAAAACCCTATCCTTTTGCTTCATCCATTGGGAGGGTTTACAAAAGC 949
Query 897 GGATGATGTTCCTTTAAGCTGGCGAATGAAACAGCACGAGAAGGTAATAATGCTAGAGGA 956
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 950 TGATGATGTTCCTCTAAGCTGGCGAATGAAACAGCACGAGAAGGT------GCTAGAGGA 1003
Query 957 CGGTGTTCTTGATCCAGAGACGACTGTGGTTTCTATATTCCCATCTCCAATGCTCTATGC 1016
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1004 TGGTGTTCTTGATCCAGAGACTACTGTGGTTTCCATATTCCCATCTCCAATGCTCTATGC 1063
Query 1017 TGGTCCAACCGAAGTGCAGTGGCACGCAAAGGCTAGGATCAATGCTGGTGCTAACTTCTA 1076
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 TGGTCCAACCGAAGTCCAATGGCACGCAAAGGCTAGGATCAATGCTGGTGCTAACTTCTA 1123
Query 1077 CATTGTGGGTAGGGATCCAGCTGGAATGGGTCATCCTGTGGAGAAACGTGATCTGTATGA 1136
|||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1124 CATTGTCGGTAGGGATCCGGCTGGAATGGGTCATCCCGTGGAGAAACGTGATCTGTACGA 1183
Query 1137 TGCTGATCACGGGAAGAAAGTACTTAGCATGGCTCCTGGACTCGAACGACTCAACATTCT 1196
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1184 TGCTGATCACGGGAAGAAAGTTCTAAGCATGGCTCCTGGACTCGAACGACTCAACATTCT 1243
Query 1197 TCCTTTCAGGGTTGCTGCTTACGATAAGACACAAGGCAAGATGGCTTTCTTTGATCCCAC 1256
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1244 TCCTTTCAGGGTTGCTGCGTACGATAAGACACAAGGAAAGATGGCTTTCTTTGATCCCTC 1303
Query 1257 TAGGGCACAGGATTTCTTGTTCATTTCTGGCACTAAGATGAGAGCATTGGCAAAGAACAG 1316
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1304 AAGGGCTCAGGACTTCTTGTTCATTTCTGGCACTAAGATGAGAGCATTGGCAAAGAACAG 1363
Query 1317 AGAGAACCCTCCAGATGGATTTATGTGCCCTGGAGGCTGGAAGGTGCTTGTGGATTACTA 1376
||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1364 AGAGAACCCACCAGATGGATTTATGTGCCCTGGAGGCTGGAAAGTCCTTGTGGATTACTA 1423
Query 1377 CGACAGTTTGACTGTAACCGGAAACACCAAACTCCCCGAAAAGATTCCGGTTTAAGACCG 1436
|||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1424 CGACAGTTTGACACTAACCGGAAACACCAAACTTCCGGAAAAGATTCCGGTTTAAGACCG 1483
Query 1437 ATAAACCCATTTATTTGTTTTCGTTTTTTAAGAACTCAACATAATGATTGAT-CCATCTT 1495
||||| ||||||||||||||| |||| ||||||||||||||| || || ||||
Sbjct 1484 ATAAAACCATTTATTTGTTTTTGTTT--------CTCAACATAATGATT-ATTCCTTCTT 1534
Query 1496 ATTGTAAGATTTGGAAAGCTTATATGAACAAAGGTAAAACAAATCTTACATA--TA-AA- 1551
||||||||||| ||||||| ||||||||||| |||| |||||||||||||| || ||
Sbjct 1535 GTTGTAAGATTTAGAAAGCT-ATATGAACAAAAGTAACACAAATCTTACATACATATAAA 1593
Query 1552 CTAAAATaaaaaaaGCAGAATGAATCTAACTTTCAATCC 1590
|||||| ||||||| |||||||||||||||||| |||||
Sbjct 1594 CTAAAA-AAAAAAACCAGAATGAATCTAACTTTTAATCC 1631
> AT3G22890.1 | Symbols: APS1 | ATP sulfurylase 1 | chr3:8112723-8114992
FORWARD LENGTH=1764
Length=1764
Score = 1158 bits (627), Expect = 0.0
Identities = 1039/1235 (84%), Gaps = 40/1235 (3%)
Strand=Plus/Plus
Query 172 CGAGCTGGCTTAATCGAGCCAGATGGTGGGAAACTTGTAGATCTTGTTGTATCGGAGCC- 230
||||| || ||||||| || || ||||| || |||||||| || | || |||||
Sbjct 253 CGAGCCGGATTAATCGCTCCCGACGGTGGTAAGCTTGTAGAGCTCATCGTGGAAGAGCCA 312
Query 231 ACGACGGCGAGAGAAGAAACACGAAGCGGCGGATTTGCCGAAAGTG-AGA-TTGACGGCG 288
| | |||||||||||||||||||| |||||||||||||| | ||| || ||||||||
Sbjct 313 AAG-CGGCGAGAGAAGAAACACGAGGCGGCGGATTTGCC--ACGTGTTGAGCTGACGGCG 369
Query 289 ATTGATTTGCAATGGATGCATGTATTGAGTGAAGGTTGGGCTAGTCCTCTTC-GAGGGTT 347
||||| |||||||||||||||||||| || ||||| ||||| ||||| | || || ||||
Sbjct 370 ATTGACTTGCAATGGATGCATGTATTAAGCGAAGGCTGGGCAAGTCCAC-TCGGA-GGTT 427
Query 348 T-ATGAGGGAATCTGAGTTCCTCCAAACTCTTCATTTCAATTTGCTCA-ATCTTGATGAT 405
| ||||| ||||| ||||||||||||||||||||||| || | ||| | |||||| ||
Sbjct 428 TCATGAGAGAATCCGAGTTCCTCCAAACTCTTCATTTTAACTCGCT-ACGTCTTGACGAC 486
Query 406 GGATCTGTTGTTAATATGTCTGTGCCTATTGTTCTTGCGATTGATGATCAACAAAAAGC- 464
|| || || ||||| ||||| |||||||||||||| || ||||| ||| ||||||||||
Sbjct 487 GGCTCCGTCGTTAACATGTCCGTGCCTATTGTTCTCGCTATTGACGATGAACAAAAAGCA 546
Query 465 CCTAATTGGTGAATCGAAACGTGTCTCTCTTGTT-GATTCTGATGATAATCCAATCGCTA 523
| | || || || || | ||||||| ||||| || |||| |||| ||| || ||||||
Sbjct 547 CGT-ATCGGCGAGTCTACACGTGTCGCTCTT-TTCAATTCCGATGGTAACCCCGTCGCTA 604
Query 524 TTCTCAATGATATTGAGATTTATAAACATCCGAAA-GAGGAACGGATTGCGAGAACTTGG 582
| |||| ||||||||||||||||| ||||| ||| || ||| |||| || ||||| |||
Sbjct 605 TCCTCAGCGATATTGAGATTTATAAGCATCC-AAAGGAAGAAAGGATAGCTAGAACATGG 663
Query 583 GGTACGACTGCACCGGGTTTGCCTTATGTAGAAGAGGCGATAACCAATGCTGGAAACTGG 642
|||||||| || || ||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 664 GGTACGACGGCTCCAGGTTTGCCTTACGTAGACGAGGCGATAACTAATGCTGGAAACTGG 723
Query 643 CTCATTGGTGGTGATCTTGAGGTT-TTAGAACCTGTTAAGTACAATGATGGGCTTGATCG 701
|||||||| ||||||||||||||| || || || || |||||||||||||||||||||||
Sbjct 724 CTCATTGGGGGTGATCTTGAGGTTCTT-GAGCCAGTGAAGTACAATGATGGGCTTGATCG 782
Query 702 TTTCAGGCTTTCGCCGT-TTGAACTGCGTAAGGAGCTAGAGAAGCGTGGCGCGGATGCTG 760
||||||||||||||| | ||| | ||||| ||| | ||||||||| |||||||| |
Sbjct 783 TTTCAGGCTTTCGCC-TGCTGAGTTACGTAAAGAGTTGGAGAAGCGTAATGCGGATGCGG 841
Query 761 TCTTTGCGTTCCAGCTTAGGAACCCGGTTCATAATGGACATGCTCTTCTTATGACTGATA 820
| ||||| |||||||| ||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 842 TGTTTGCTTTCCAGCTGAGGAATCCTGTTCATAATGGTCATGCTCTTCTTATGACTGATA 901
Query 821 CTCGTAGGAGACTTCTTGAGATGGGTTATCAAAA-CCCAATCCTTTTGCTTCATCCATTG 879
|||||||||||||||||||||||||||| ||||| ||| || |||||||||||||| ||
Sbjct 902 CTCGTAGGAGACTTCTTGAGATGGGTTA-CAAAAACCCTATTCTTTTGCTTCATCCGTTA 960
Query 880 GGAGGGTTTACGAAAG-CGGATGATGTTCCTTTAAGCT-GGCGAATGAAACAGCACGAGA 937
|| |||||||| |||| | ||||||||||||||| | | || | ||||| || |||||||
Sbjct 961 GGTGGGTTTAC-AAAGGCTGATGATGTTCCTTTA-GATTGGAGGATGAAGCAACACGAGA 1018
Query 938 AGGTAATAATGCTAGAGGACGGTGTTCTTGATCCAGAGACGACTGTGGTTTCTATATTCC 997
|||| | |||||||| |||||||| ||||| ||||| || |||||||| |||||||
Sbjct 1019 AGGT--T----CTAGAGGATGGTGTTCTCGATCCGGAGACTACAGTGGTTTCGATATTCC 1072
Query 998 CATCTCCAATGC-TCTATGCTGGTCCAACCGAAGTGCAGTGGCACGCAAAGGCTAGGATC 1056
| || || |||| | || |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1073 CGTCACCTATGCAT-TACGCTGGTCCAACCGAAGTGCAGTGGCACGCAAAGGCTAGAATC 1131
Query 1057 AATGCTGGTGCTAACTTCTACATTGTGGGTAGGGATCCAGCTGGAATGGGTCATCCTGTG 1116
||||||||||||||||| |||||||||||| | ||||| ||||| ||||||||||| ||
Sbjct 1132 AATGCTGGTGCTAACTTTTACATTGTGGGTCGTGATCCTGCTGGGATGGGTCATCCAGTA 1191
Query 1117 GAGAAACGTGATCTGTATGATGCTGATCACGGGAAGAAAGTACTTAGCATGGCTCCTGGA 1176
|||||||||||||| || ||||||||||| || ||||||||||| |||||||| || |||
Sbjct 1192 GAGAAACGTGATCTTTACGATGCTGATCATGGAAAGAAAGTACTAAGCATGGCACCAGGA 1251
Query 1177 CTCGAACGACTCAACATTCTTCCTTTCAGGGTTGCTGCTTACGATAAGACACAAGGCAAG 1236
||||||||||||||||| |||||||||||||||||||| || || ||||| |||||||||
Sbjct 1252 CTCGAACGACTCAACATCCTTCCTTTCAGGGTTGCTGCATATGACAAGACGCAAGGCAAG 1311
Query 1237 ATGGCTTTCTTTGATCCCACTAGGGCACAGGATTTCTTGTTCATTTCTGGCACTAAGATG 1296
||||||||||| |||||| | ||| | || |||||||||||||| || ||||||||||||
Sbjct 1312 ATGGCTTTCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGATG 1371
Query 1297 AG-AGCATTGGCAAAGAACAGA-GAGAACCCTCCAGATGGATTTATGTGCCCTGGAGGCT 1354
| | ||||||||||||||| | || ||||| ||||| || ||||||||||| || || |
Sbjct 1372 CGCA-CATTGGCAAAGAACA-ACGAAAACCCGCCAGACGGTTTTATGTGCCCAGGTGGAT 1429
Query 1355 GGAAGGTGCTTGTGGATTACTACGACAGTTTGACT 1389
|||| || || ||||||||||| || || ||||||
Sbjct 1430 GGAAAGTTCTGGTGGATTACTATGAGAGCTTGACT 1464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78513652380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5