BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493439
Length=1619
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14670.1 | Symbols: CLPB2 | casein lytic proteinase B2 | chr... 2316 0.0
AT1G74310.1 | Symbols: ATHSP101, HSP101, HOT1 | heat shock prot... 1138 0.0
> AT4G14670.1 | Symbols: CLPB2 | casein lytic proteinase B2 | chr4:8410054-8412557
FORWARD LENGTH=1872
Length=1872
Score = 2316 bits (1254), Expect = 0.0
Identities = 1503/1623 (93%), Gaps = 18/1623 (1%)
Strand=Plus/Plus
Query 6 CGGGGAGACCAGTGTGGGAGTAGAGGCATTGGTGATTAGTCTTCTTGATGATTCTCAAAT 65
|||||| |||| |||||||||| || |||||| |||||||||||||| |||||||||||
Sbjct 237 CGGGGATACCAAAGTGGGAGTAGCGGTATTGGTAATTAGTCTTCTTGAAGATTCTCAAAT 296
Query 66 CAGGGATTTGTTGAAAGAAGCTGGT-TCTGTACCAGAGAAGGTTAAGTCTGAGGTGGAGA 124
||| ||| ||||||||||||||||| | ||| || |||||||||||||||||||||||||
Sbjct 297 CAGTGATGTGTTGAAAGAAGCTGGTGT-TGTGCCTGAGAAGGTTAAGTCTGAGGTGGAGA 355
Query 125 AGCTTGGTGGCGAGGTAAACCTTCAGGCTTTGAAGACTTATGGGATAGATTTGGTTGAGC 184
||||| |||| ||||||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 356 AGCTTCGTGGGGAGGTAATCCTTCGGGCTTTGAAGACTTATGGGACAGATTTGGTTGAGC 415
Query 185 AAGTAGGTAAGCTTGATCCTGTCATTGGCCGAGACAAGGAGATTAGAAGAGTTGTTG-GG 243
||| |||||||||||||||||||||||||||| ||| ||||||||||||||| ||| ||
Sbjct 416 AAGCAGGTAAGCTTGATCCTGTCATTGGCCGACACAGGGAGATTAGAAGAGTAATTGAGG 475
Query 244 ATTCTCTCAAGGAGAACCAAGAACAACCCCGTGCTTATTGGTGAGCCAGGTGTTGGAAAA 303
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 476 -TTCTCTCAAGGAGAACCAAGAACAACCCCGTGCTCATCGGTGAGCCAGGTGTTGGAAAA 534
Query 304 ACTGCTGTGGTTGAAGGTTTGGCTCAAAGGATATTGAAAGGAGACGTGCCTATCAATCTT 363
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 535 ACTGCTGTGGTTGAAGGTTTGGCTCAAAGGATACTGAAAGGAGACGTGCCTATCAATCTT 594
Query 364 ACCGATGTAAAGCTCT-TTTCCTTGGACTTGGGTGCAATGGTTGCCGGAACAACACTACG 422
|| | |||||| || | |||||||||| || |||||||||||||| ||||||||||| ||
Sbjct 595 ACTGGTGTAAAACT-TATTTCCTTGGAATTTGGTGCAATGGTTGCTGGAACAACACTCCG 653
Query 423 TGGACAATTCGAAGAAAGATTGAAGTCGGTCTTGAAAGAAGTTGA-GAATGCTCAAGGCA 481
||||||||||||||||||||||||||| |||||||||| |||||| ||| ||||||||||
Sbjct 654 TGGACAATTCGAAGAAAGATTGAAGTCTGTCTTGAAAGCAGTTGAGGAA-GCTCAAGGCA 712
Query 482 AAGTTGTTCTCTTTATCGATGAGATCCACATGGCTCTTGGTGC-TGGAAAGGCAAGTGGC 540
|||||||||| |||||||||||||||||||||||||||||||| || ||| ||||||||
Sbjct 713 AAGTTGTTCTGTTTATCGATGAGATCCACATGGCTCTTGGTGCTTGCAAA-GCAAGTGGG 771
Query 541 TCCACGGATGCTGCTAATTTGCTTAAGCCTATGTTAGCAAGAGGTCAGCTTCGTTGCATT 600
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 772 TCAACGGATGCTGCTAAGTTGCTTAAGCCTATGTTAGCAAGAGGTCAGCTTCGTTTCATT 831
Query 601 GGTGCTACTACGCTTGAGGAATACCGAACACATATCGAGAAAGATGCTGCATTCGAGAGA 660
|| |||||||||||||||||||||||||||||| | |||||||||||||| || ||||||
Sbjct 832 GGAGCTACTACGCTTGAGGAATACCGAACACATGTTGAGAAAGATGCTGCTTTTGAGAGA 891
Query 661 AGGTTCCAACAAGTGTATGTAGCTGAGCCTAGTGTCCCTGACACTATCAGTATTCTTCGA 720
|||||||| ||||||| |||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 892 AGGTTCCAGCAAGTGTTTGTAGCTGAGCCTAGTGTGCCTGATACTATCAGTATTCTTCGA 951
Query 721 GGGCTTAAAGAAAAATATGAAGGACACCATGGTGTTCGTATCCAAGACAGTGCTCTTGTT 780
|||||||||||||||||||||||||| |||||||||||||||||||| || ||||| |||
Sbjct 952 GGGCTTAAAGAAAAATATGAAGGACATCATGGTGTTCGTATCCAAGATAGAGCTCTAGTT 1011
Query 781 GTTTCTGCTCAATTGTCTGCGCGTTACATCACTGCTCGACGTTTACCGGATAAGGCAATT 840
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1012 CTTTCTGCTCAATTGTCTGAACGTTACATCACTGGTCGACGTTTACCGGATAAGGCAATT 1071
Query 841 GATTTGGTTGATGAGTCTTGTGCACATGTGAGAGTCCAGCTTGATAGTCAACCAGAAGAA 900
||||| ||||||||||||||||||||||| | || ||||||||||| |||||||||||||
Sbjct 1072 GATTTAGTTGATGAGTCTTGTGCACATGTCAAAGCCCAGCTTGATATTCAACCAGAAGAA 1131
Query 901 ATTGATTA-CCTTGAAAGAAAAACAATGCAACTAAAGATAGAGATTCATGCTCTCGAAAA 959
||||| || ||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1132 ATTGA-TAGCCTTGAAAGAAAAGTAATGCAACTAGAGATAGAGATTCATGCTCTCGAAAA 1190
Query 960 GGAGAAGGACGACAAAGCTAGCGAAGCTCGTCTTTACGAGGTGAGGAAAGAGCTTGATGA 1019
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1191 GGAGAAGGACGACAAAGCTAGCGAAGCTCGTCTTTCCGAGGTGAGGAAAGAGCTTGATGA 1250
Query 1020 CTTGAGGGACAAGCTTGAGCCTCTTACAATAAAATACAAGAATGAGAAAAGGATAATTAA 1079
||||||||||||||||||||||||||||||||||||||| || ||||||| ||| |||||
Sbjct 1251 CTTGAGGGACAAGCTTGAGCCTCTTACAATAAAATACAAAAAGGAGAAAAAGATCATTAA 1310
Query 1080 TGAAACTCGGAGTCTTAAACAGAAACGAGATGAGCTCATGATTGCTCTACAAGAGGCTGA 1139
|||||||||||| ||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 1311 TGAAACTCGGAGGCTTAAACAGAATCGAGACGATCTCATGATTGCTCTACAAGAGGCTGA 1370
Query 1140 GAGACAATATGACCTTCCTAAAGCTGCTGATCTAAGATATGGGGCAATTCAGGAAGTAGA 1199
||||||| ||||| ||||||||||||||| ||||| |||||| |||||||||||||||||
Sbjct 1371 GAGACAACATGACGTTCCTAAAGCTGCTGTTCTAAAATATGGTGCAATTCAGGAAGTAGA 1430
Query 1200 ATCCGCGATAGCAAAATTAGAAAAGAGTGTTAAAGATAACGTGATGCTTACGGAAACTGT 1259
||| |||||||| ||| |||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1431 ATCTGCGATAGCGAAACTAGAAAAGAGTGCTAAAGATAACGTGATGCTTACAGAAACTGT 1490
Query 1260 TGGGCCAGAGAATATTGCTGAGGTAGTGAGCCGATGGACTGGGATTCCAGTGACT-GCAC 1318
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct 1491 TGGGCCAGAGAATATTGCTGAGGTAGTGAGCCGATGGACTGGGATACCAGTGACTAG-AC 1549
Query 1319 TTGACCAGAACGAGAAGAAGAGGCTGATTTCTCTTGCTGATAGGTTGCACGAGAGAGTTG 1378
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1550 TTGACCAGAACGAGAAGAAGAGGCTAATTTCTCTTGCTGATAAGTTGCACGAGAGAGTTG 1609
Query 1379 TTGGACAAGACGAAGCCGTGAAAGCTGTAGCTGCGGCAATTCTAAGGTCAAGGGTTGGAC 1438
|||||||||||||||| ||||||||||| ||||| ||||| |||||||| ||||||||||
Sbjct 1610 TTGGACAAGACGAAGCTGTGAAAGCTGTGGCTGCTGCAATACTAAGGTCGAGGGTTGGAC 1669
Query 1439 TAGGAAGGCCACAACAACCATCTGGTTCCTTTCTTTTCCTCGGTCCAACTGGTGTTGGTA 1498
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1670 TAGGAAGGCCACAACAACCGTCTGGTTCCTTTCTCTTCCTCGGTCCAACTGGTGTTGGTA 1729
Query 1499 AAACTGAGCTGGCTAAAGCTCTTGCTGAGCAACTCTTTTAC-GATGAAAACCTACTTGTT 1557
|||| ||||||||||| ||||| ||||||||||||||| || | |||||||||||| |||
Sbjct 1730 AAACCGAGCTGGCTAAGGCTCTGGCTGAGCAACTCTTTGACAG-TGAAAACCTACTCGTT 1788
Query 1558 AGGCTTGATATGTCGGAGTATA-TGGATAGATCCACTGTTAATAAACTTATAGGGGCACC 1616
|||||||||||||||||||||| || | | || | |||||||||||||||||||||||||
Sbjct 1789 AGGCTTGATATGTCGGAGTATAATG-ACAAATTCTCTGTTAATAAACTTATAGGGGCACC 1847
Query 1617 ACC 1619
|||
Sbjct 1848 ACC 1850
> AT1G74310.1 | Symbols: ATHSP101, HSP101, HOT1 | heat shock protein
101 | chr1:27936508-27940190 REVERSE LENGTH=3165
Length=3165
Score = 1138 bits (616), Expect = 0.0
Identities = 1198/1472 (81%), Gaps = 68/1472 (5%)
Strand=Plus/Plus
Query 146 TTCAGGCTTTGAAGACTTATGGGATAGATTTGGTTGAGCAAGTAGGTAAGCTTGATCCTG 205
|||| ||||| ||||||||||| | ||||||||||||||||| ||| |||||||||||||
Sbjct 704 TTCAAGCTTTAAAGACTTATGGAAGAGATTTGGTTGAGCAAGCAGGGAAGCTTGATCCTG 763
Query 206 TCATTGGCCGAGACAAGGAGATTAGAAGAGTTGTTG-GGATTCTCTCAAGGAGAACCAAG 264
| ||||| || || |||||||||||||||| | || ||||||| || |||||||| |||
Sbjct 764 TGATTGGTCGTGATGAGGAGATTAGAAGAGTCG-TGAGGATTCTTTCGAGGAGAACGAAG 822
Query 265 AACAACCCCGTGCTTATTGGTGAGCCAGGTGTTGGAAAAACTGCTGTGGTTGAAGGTTTG 324
||||| || ||||||||||| |||||||| ||||| ||||| |||||||||||||||||
Sbjct 823 AACAATCCTGTGCTTATTGGAGAGCCAGGAGTTGGTAAAACAGCTGTGGTTGAAGGTTTA 882
Query 325 GCTCAAAGGATAT-TGAAAGGAGACGTGCCTATCAATCTTACCGATGTAAAG-CTCTTTT 382
|| |||||||| | |||||||||| ||||| | || |||||| ||||| || | |||
Sbjct 883 GCACAAAGGAT-TGTGAAAGGAGATGTGCCCAACAGTCTTACTGATGT-GAGATTAATTT 940
Query 383 CCTTGGACTTGGGTGCAATGGTTGCCGGAAC-AACACTA-CGTGGACAATTCGAAGAAAG 440
| |||||| ||||||| | ||||| || | || | || || ||| | || ||||||||
Sbjct 941 CGTTGGACATGGGTGCGTTAGTTGCTGGTGCTAA-A-TACCGAGGAGAGTTTGAAGAAAG 998
Query 441 ATTGAAGTCGGTCTTGAAAGAAGTTGAGAATGCTCAAGGCAAAGTTG-TTCTCTTTATCG 499
||||| || || ||||||||||||||| | ||| ||||||||| || |||||||||| |
Sbjct 999 GTTGAAATCTGTTTTGAAAGAAGTTGAGGACGCTGAAGGCAAAG-TGATTCTCTTTATTG 1057
Query 500 ATGAGATCCACATGGCTCTTGGTGCTGG--AAA-GGCAAGTGGCTCCACGGATGCTGCTA 556
||||||| || ||| |||||||||||| ||| | ||| || || | |||||| ||||
Sbjct 1058 ATGAGATTCATTTGGTTCTTGGTGCTGGCAAAACTG-AAG-GG-TCGATGGATGCAGCTA 1114
Query 557 ATTTGCTT-AAGCCTATGTTAGCAAGAGGTCAGCTTCGTTGCATTGGTGCTACTACGCTT 615
|| || || ||||| |||||||| ||||| |||||||| |||||||||||||| ||||||
Sbjct 1115 ATCTG-TTCAAGCCCATGTTAGCTAGAGGGCAGCTTCGATGCATTGGTGCTACAACGCTT 1173
Query 616 GAGGAATAC-CGAACACATATCGAGAAAGATGCTGCATTCGAGAGAAGGTTCCAACAAGT 674
|| |||||| ||| | || | |||||||||||||| || ||||| ||||||||||||||
Sbjct 1174 GAAGAATACAGGAA-ATATGTTGAGAAAGATGCTGCCTTTGAGAGGAGGTTCCAACAAGT 1232
Query 675 GTATGTAGCTGAGCCTAGTGTCCCTGACACTATCAGTATTCTTCGAGGGCTTAAAGAAAA 734
||||| || ||||| ||||| |||||||| || ||||| ||| |||| || || || ||
Sbjct 1233 CTATGTTGCGGAGCCAAGTGTGCCTGACACCATTAGTATCCTTAGAGGACTCAAGGAGAA 1292
Query 735 ATATGAAGGACACCATGGTGTTCGTATCCAAGACAGTGCTCTTGTTGTTTCTGCTCAATT 794
||||| ||||| |||||||| || ||||||||||| |||||| | | ||||||| |
Sbjct 1293 GTATGAGGGACATCATGGTGTGCGAATCCAAGACAGAGCTCTTATAAATGCTGCTCAGCT 1352
Query 795 GTCTGCGCGTTACATCACTGCTCGACGTTTACCGGATAAGGCAATTGATTTGGTTGATGA 854
|||||| |||||||| |||| ||| | |||||||||||| ||||||||||||||||||||
Sbjct 1353 GTCTGCTCGTTACATAACTGGTCGGCATTTACCGGATAAAGCAATTGATTTGGTTGATGA 1412
Query 855 GTCTTGTGC-ACATGTGAGAGTCCAGCTTGATAGTCAACCAGAAGAAATTGATTACCTTG 913
| ||||||| | |||||||||||||||||||||||||||| ||||| |||||| ||||||
Sbjct 1413 GGCTTGTGCGA-ATGTGAGAGTCCAGCTTGATAGTCAACCTGAAGAGATTGATAACCTTG 1471
Query 914 AAAGAAAAACAATGCAACTA-AAGATAGAGA-TTCATGCTCTCGAAAAGG-AGAAGGACG 970
|||| || | ||||| || || || || | |||| || || | ||||| |||||||
Sbjct 1472 AAAGGAAGAGGATGCAGCTGGAA-ATTGA-ACTTCACGC-CTTGGAAAGGGAGAAGGAT- 1527
Query 971 ACAAAGCTAGCGAAGCTCGTCTT-TACGAGGTGAGGAAAGAGCTTGATGACTTGAGGGAC 1029
| || || ||| ||||||| ||| || |||||| ||||||||||||||||| |||| |||
Sbjct 1528 A-AA-GCCAGCAAAGCTCGACTTATA-GAGGTGCGGAAAGAGCTTGATGACCTGAGAGAC 1584
Query 1030 AAGCTTGAGCCTCTTACAATAAAATACAAGAATG-AGAAA-AGGATAATTAATGAAACTC 1087
|||||| ||||||| || || ||||||| ||| | ||||| || | |||| |||| | ||
Sbjct 1585 AAGCTTCAGCCTCTCACGATGAAATACA-GAAAGGAGAAAGAG-AGAATTGATGAGATTC 1642
Query 1088 GGAGTCTTAAACAGAAACGAGATGAGCTCATGATTGCTCTACAAGAGGCTGAGA-GACA- 1145
| || |||||||||||| |||| ||||||||| || || | || ||||| || | || |
Sbjct 1643 GAAGGCTTAAACAGAAAAGAGAAGAGCTCATGTTTTCTTTGCAGGAGGCAGA-ACGA-AG 1700
Query 1146 ATATGACCTTCCTAA-AGCTGCTGATCTAAGATATGGGGCAATTCAGGAAGTAGAATCCG 1204
|||||||||| | || ||||||||||||||||||||| |||||||| ||||| ||||| |
Sbjct 1701 ATATGACCTTGC-AAGAGCTGCTGATCTAAGATATGGCGCAATTCAAGAAGTGGAATCTG 1759
Query 1205 CGATAGCAAAA-TTAGAAAAGAG-TG-TTA--AAGATAACGTGATGCTTACGGAAA-CTG 1258
| || || || || ||| || | || |||| || |||||||| || |||| | |
Sbjct 1760 CAATTGCCCAACTT-GAAG-GAACTTCTTCTGAAGAGAATGTGATGCTCACAGAAAAC-G 1816
Query 1259 TTGGGCCAGAGA-ATATTGCTGAGGTAGTGAGCCGATGGACTGGGATTCCAGTGACT-GC 1316
||||||| || | | ||||||||||| |||||||| ||||| |||||||||||||| |
Sbjct 1817 TTGGGCCTGA-ACACATTGCTGAGGTTGTGAGCCGTTGGACAGGGATTCCAGTGACGAG- 1874
Query 1317 ACTTGACCAGAACGAGAAGAAGAGGCTGATTTCTCTTGCTGATAGGTTGCACGAGAGAGT 1376
||||| ||| || |||||| ||||| ||||| |||||||||||||||||| || | ||
Sbjct 1875 ACTTGGCCAAAATGAGAAGGAGAGGTTGATTGGTCTTGCTGATAGGTTGCATAAGCGGGT 1934
Query 1377 TGTTGGACAAGA--CGAAGCCGTGAAA-GCTGTAGCTGCGGCAATTCTAAGGTCAAGGGT 1433
||| ||||| || | |||| || ||| || || ||| ||||||||||||||||||||
Sbjct 1935 TGTGGGACA-GAATC-AAGCGGT-AAATGCAGTTTCTGAGGCAATTCTAAGGTCAAGGGC 1991
Query 1434 TGGACTAGGAAGGCCACAACAACCATCTGGTTCCTTTCTT-TTCCTCGGTCCAACTGGTG 1492
||||| |||||||||||||| ||| |||| || || ||| ||||| || ||||||||||
Sbjct 1992 AGGACTTGGAAGGCCACAACAGCCAACTGGATCATT-CTTATTCCTTGGACCAACTGGTG 2050
Query 1493 TTGGTAAAACTGAGCTGGCTAAAGCTCTTGCTGAGCAACTCTTTTACGATGAAAACCTAC 1552
|||| ||||||||||| || || |||||||||||||| || ||| | ||||||||||| |
Sbjct 2051 TTGGCAAAACTGAGCTCGCCAAGGCTCTTGCTGAGCAGCTGTTTGATGATGAAAACCT-C 2109
Query 1553 TT-GTTAGGCTTGATATGTCGGAGTATATGGA 1583
|| ||| || ||||||||||||| ||||||||
Sbjct 2110 TTAGTTCGGATTGATATGTCGGAATATATGGA 2141
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79969468185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5