BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493439 Length=1619 Score E Sequences producing significant alignments: (Bits) Value AT4G14670.1 | Symbols: CLPB2 | casein lytic proteinase B2 | chr... 2316 0.0 AT1G74310.1 | Symbols: ATHSP101, HSP101, HOT1 | heat shock prot... 1138 0.0 > AT4G14670.1 | Symbols: CLPB2 | casein lytic proteinase B2 | chr4:8410054-8412557 FORWARD LENGTH=1872 Length=1872 Score = 2316 bits (1254), Expect = 0.0 Identities = 1503/1623 (93%), Gaps = 18/1623 (1%) Strand=Plus/Plus Query 6 CGGGGAGACCAGTGTGGGAGTAGAGGCATTGGTGATTAGTCTTCTTGATGATTCTCAAAT 65 |||||| |||| |||||||||| || |||||| |||||||||||||| ||||||||||| Sbjct 237 CGGGGATACCAAAGTGGGAGTAGCGGTATTGGTAATTAGTCTTCTTGAAGATTCTCAAAT 296 Query 66 CAGGGATTTGTTGAAAGAAGCTGGT-TCTGTACCAGAGAAGGTTAAGTCTGAGGTGGAGA 124 ||| ||| ||||||||||||||||| | ||| || ||||||||||||||||||||||||| Sbjct 297 CAGTGATGTGTTGAAAGAAGCTGGTGT-TGTGCCTGAGAAGGTTAAGTCTGAGGTGGAGA 355 Query 125 AGCTTGGTGGCGAGGTAAACCTTCAGGCTTTGAAGACTTATGGGATAGATTTGGTTGAGC 184 ||||| |||| ||||||| ||||| |||||||||||||||||||| |||||||||||||| Sbjct 356 AGCTTCGTGGGGAGGTAATCCTTCGGGCTTTGAAGACTTATGGGACAGATTTGGTTGAGC 415 Query 185 AAGTAGGTAAGCTTGATCCTGTCATTGGCCGAGACAAGGAGATTAGAAGAGTTGTTG-GG 243 ||| |||||||||||||||||||||||||||| ||| ||||||||||||||| ||| || Sbjct 416 AAGCAGGTAAGCTTGATCCTGTCATTGGCCGACACAGGGAGATTAGAAGAGTAATTGAGG 475 Query 244 ATTCTCTCAAGGAGAACCAAGAACAACCCCGTGCTTATTGGTGAGCCAGGTGTTGGAAAA 303 |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 476 -TTCTCTCAAGGAGAACCAAGAACAACCCCGTGCTCATCGGTGAGCCAGGTGTTGGAAAA 534 Query 304 ACTGCTGTGGTTGAAGGTTTGGCTCAAAGGATATTGAAAGGAGACGTGCCTATCAATCTT 363 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 535 ACTGCTGTGGTTGAAGGTTTGGCTCAAAGGATACTGAAAGGAGACGTGCCTATCAATCTT 594 Query 364 ACCGATGTAAAGCTCT-TTTCCTTGGACTTGGGTGCAATGGTTGCCGGAACAACACTACG 422 || | |||||| || | |||||||||| || |||||||||||||| ||||||||||| || Sbjct 595 ACTGGTGTAAAACT-TATTTCCTTGGAATTTGGTGCAATGGTTGCTGGAACAACACTCCG 653 Query 423 TGGACAATTCGAAGAAAGATTGAAGTCGGTCTTGAAAGAAGTTGA-GAATGCTCAAGGCA 481 ||||||||||||||||||||||||||| |||||||||| |||||| ||| |||||||||| Sbjct 654 TGGACAATTCGAAGAAAGATTGAAGTCTGTCTTGAAAGCAGTTGAGGAA-GCTCAAGGCA 712 Query 482 AAGTTGTTCTCTTTATCGATGAGATCCACATGGCTCTTGGTGC-TGGAAAGGCAAGTGGC 540 |||||||||| |||||||||||||||||||||||||||||||| || ||| |||||||| Sbjct 713 AAGTTGTTCTGTTTATCGATGAGATCCACATGGCTCTTGGTGCTTGCAAA-GCAAGTGGG 771 Query 541 TCCACGGATGCTGCTAATTTGCTTAAGCCTATGTTAGCAAGAGGTCAGCTTCGTTGCATT 600 || |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| Sbjct 772 TCAACGGATGCTGCTAAGTTGCTTAAGCCTATGTTAGCAAGAGGTCAGCTTCGTTTCATT 831 Query 601 GGTGCTACTACGCTTGAGGAATACCGAACACATATCGAGAAAGATGCTGCATTCGAGAGA 660 || |||||||||||||||||||||||||||||| | |||||||||||||| || |||||| Sbjct 832 GGAGCTACTACGCTTGAGGAATACCGAACACATGTTGAGAAAGATGCTGCTTTTGAGAGA 891 Query 661 AGGTTCCAACAAGTGTATGTAGCTGAGCCTAGTGTCCCTGACACTATCAGTATTCTTCGA 720 |||||||| ||||||| |||||||||||||||||| ||||| |||||||||||||||||| Sbjct 892 AGGTTCCAGCAAGTGTTTGTAGCTGAGCCTAGTGTGCCTGATACTATCAGTATTCTTCGA 951 Query 721 GGGCTTAAAGAAAAATATGAAGGACACCATGGTGTTCGTATCCAAGACAGTGCTCTTGTT 780 |||||||||||||||||||||||||| |||||||||||||||||||| || ||||| ||| Sbjct 952 GGGCTTAAAGAAAAATATGAAGGACATCATGGTGTTCGTATCCAAGATAGAGCTCTAGTT 1011 Query 781 GTTTCTGCTCAATTGTCTGCGCGTTACATCACTGCTCGACGTTTACCGGATAAGGCAATT 840 |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct 1012 CTTTCTGCTCAATTGTCTGAACGTTACATCACTGGTCGACGTTTACCGGATAAGGCAATT 1071 Query 841 GATTTGGTTGATGAGTCTTGTGCACATGTGAGAGTCCAGCTTGATAGTCAACCAGAAGAA 900 ||||| ||||||||||||||||||||||| | || ||||||||||| ||||||||||||| Sbjct 1072 GATTTAGTTGATGAGTCTTGTGCACATGTCAAAGCCCAGCTTGATATTCAACCAGAAGAA 1131 Query 901 ATTGATTA-CCTTGAAAGAAAAACAATGCAACTAAAGATAGAGATTCATGCTCTCGAAAA 959 ||||| || ||||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 1132 ATTGA-TAGCCTTGAAAGAAAAGTAATGCAACTAGAGATAGAGATTCATGCTCTCGAAAA 1190 Query 960 GGAGAAGGACGACAAAGCTAGCGAAGCTCGTCTTTACGAGGTGAGGAAAGAGCTTGATGA 1019 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1191 GGAGAAGGACGACAAAGCTAGCGAAGCTCGTCTTTCCGAGGTGAGGAAAGAGCTTGATGA 1250 Query 1020 CTTGAGGGACAAGCTTGAGCCTCTTACAATAAAATACAAGAATGAGAAAAGGATAATTAA 1079 ||||||||||||||||||||||||||||||||||||||| || ||||||| ||| ||||| Sbjct 1251 CTTGAGGGACAAGCTTGAGCCTCTTACAATAAAATACAAAAAGGAGAAAAAGATCATTAA 1310 Query 1080 TGAAACTCGGAGTCTTAAACAGAAACGAGATGAGCTCATGATTGCTCTACAAGAGGCTGA 1139 |||||||||||| ||||||||||| ||||| || |||||||||||||||||||||||||| Sbjct 1311 TGAAACTCGGAGGCTTAAACAGAATCGAGACGATCTCATGATTGCTCTACAAGAGGCTGA 1370 Query 1140 GAGACAATATGACCTTCCTAAAGCTGCTGATCTAAGATATGGGGCAATTCAGGAAGTAGA 1199 ||||||| ||||| ||||||||||||||| ||||| |||||| ||||||||||||||||| Sbjct 1371 GAGACAACATGACGTTCCTAAAGCTGCTGTTCTAAAATATGGTGCAATTCAGGAAGTAGA 1430 Query 1200 ATCCGCGATAGCAAAATTAGAAAAGAGTGTTAAAGATAACGTGATGCTTACGGAAACTGT 1259 ||| |||||||| ||| |||||||||||| ||||||||||||||||||||| |||||||| Sbjct 1431 ATCTGCGATAGCGAAACTAGAAAAGAGTGCTAAAGATAACGTGATGCTTACAGAAACTGT 1490 Query 1260 TGGGCCAGAGAATATTGCTGAGGTAGTGAGCCGATGGACTGGGATTCCAGTGACT-GCAC 1318 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | || Sbjct 1491 TGGGCCAGAGAATATTGCTGAGGTAGTGAGCCGATGGACTGGGATACCAGTGACTAG-AC 1549 Query 1319 TTGACCAGAACGAGAAGAAGAGGCTGATTTCTCTTGCTGATAGGTTGCACGAGAGAGTTG 1378 ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| Sbjct 1550 TTGACCAGAACGAGAAGAAGAGGCTAATTTCTCTTGCTGATAAGTTGCACGAGAGAGTTG 1609 Query 1379 TTGGACAAGACGAAGCCGTGAAAGCTGTAGCTGCGGCAATTCTAAGGTCAAGGGTTGGAC 1438 |||||||||||||||| ||||||||||| ||||| ||||| |||||||| |||||||||| Sbjct 1610 TTGGACAAGACGAAGCTGTGAAAGCTGTGGCTGCTGCAATACTAAGGTCGAGGGTTGGAC 1669 Query 1439 TAGGAAGGCCACAACAACCATCTGGTTCCTTTCTTTTCCTCGGTCCAACTGGTGTTGGTA 1498 ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 1670 TAGGAAGGCCACAACAACCGTCTGGTTCCTTTCTCTTCCTCGGTCCAACTGGTGTTGGTA 1729 Query 1499 AAACTGAGCTGGCTAAAGCTCTTGCTGAGCAACTCTTTTAC-GATGAAAACCTACTTGTT 1557 |||| ||||||||||| ||||| ||||||||||||||| || | |||||||||||| ||| Sbjct 1730 AAACCGAGCTGGCTAAGGCTCTGGCTGAGCAACTCTTTGACAG-TGAAAACCTACTCGTT 1788 Query 1558 AGGCTTGATATGTCGGAGTATA-TGGATAGATCCACTGTTAATAAACTTATAGGGGCACC 1616 |||||||||||||||||||||| || | | || | ||||||||||||||||||||||||| Sbjct 1789 AGGCTTGATATGTCGGAGTATAATG-ACAAATTCTCTGTTAATAAACTTATAGGGGCACC 1847 Query 1617 ACC 1619 ||| Sbjct 1848 ACC 1850 > AT1G74310.1 | Symbols: ATHSP101, HSP101, HOT1 | heat shock protein 101 | chr1:27936508-27940190 REVERSE LENGTH=3165 Length=3165 Score = 1138 bits (616), Expect = 0.0 Identities = 1198/1472 (81%), Gaps = 68/1472 (5%) Strand=Plus/Plus Query 146 TTCAGGCTTTGAAGACTTATGGGATAGATTTGGTTGAGCAAGTAGGTAAGCTTGATCCTG 205 |||| ||||| ||||||||||| | ||||||||||||||||| ||| ||||||||||||| Sbjct 704 TTCAAGCTTTAAAGACTTATGGAAGAGATTTGGTTGAGCAAGCAGGGAAGCTTGATCCTG 763 Query 206 TCATTGGCCGAGACAAGGAGATTAGAAGAGTTGTTG-GGATTCTCTCAAGGAGAACCAAG 264 | ||||| || || |||||||||||||||| | || ||||||| || |||||||| ||| Sbjct 764 TGATTGGTCGTGATGAGGAGATTAGAAGAGTCG-TGAGGATTCTTTCGAGGAGAACGAAG 822 Query 265 AACAACCCCGTGCTTATTGGTGAGCCAGGTGTTGGAAAAACTGCTGTGGTTGAAGGTTTG 324 ||||| || ||||||||||| |||||||| ||||| ||||| ||||||||||||||||| Sbjct 823 AACAATCCTGTGCTTATTGGAGAGCCAGGAGTTGGTAAAACAGCTGTGGTTGAAGGTTTA 882 Query 325 GCTCAAAGGATAT-TGAAAGGAGACGTGCCTATCAATCTTACCGATGTAAAG-CTCTTTT 382 || |||||||| | |||||||||| ||||| | || |||||| ||||| || | ||| Sbjct 883 GCACAAAGGAT-TGTGAAAGGAGATGTGCCCAACAGTCTTACTGATGT-GAGATTAATTT 940 Query 383 CCTTGGACTTGGGTGCAATGGTTGCCGGAAC-AACACTA-CGTGGACAATTCGAAGAAAG 440 | |||||| ||||||| | ||||| || | || | || || ||| | || |||||||| Sbjct 941 CGTTGGACATGGGTGCGTTAGTTGCTGGTGCTAA-A-TACCGAGGAGAGTTTGAAGAAAG 998 Query 441 ATTGAAGTCGGTCTTGAAAGAAGTTGAGAATGCTCAAGGCAAAGTTG-TTCTCTTTATCG 499 ||||| || || ||||||||||||||| | ||| ||||||||| || |||||||||| | Sbjct 999 GTTGAAATCTGTTTTGAAAGAAGTTGAGGACGCTGAAGGCAAAG-TGATTCTCTTTATTG 1057 Query 500 ATGAGATCCACATGGCTCTTGGTGCTGG--AAA-GGCAAGTGGCTCCACGGATGCTGCTA 556 ||||||| || ||| |||||||||||| ||| | ||| || || | |||||| |||| Sbjct 1058 ATGAGATTCATTTGGTTCTTGGTGCTGGCAAAACTG-AAG-GG-TCGATGGATGCAGCTA 1114 Query 557 ATTTGCTT-AAGCCTATGTTAGCAAGAGGTCAGCTTCGTTGCATTGGTGCTACTACGCTT 615 || || || ||||| |||||||| ||||| |||||||| |||||||||||||| |||||| Sbjct 1115 ATCTG-TTCAAGCCCATGTTAGCTAGAGGGCAGCTTCGATGCATTGGTGCTACAACGCTT 1173 Query 616 GAGGAATAC-CGAACACATATCGAGAAAGATGCTGCATTCGAGAGAAGGTTCCAACAAGT 674 || |||||| ||| | || | |||||||||||||| || ||||| |||||||||||||| Sbjct 1174 GAAGAATACAGGAA-ATATGTTGAGAAAGATGCTGCCTTTGAGAGGAGGTTCCAACAAGT 1232 Query 675 GTATGTAGCTGAGCCTAGTGTCCCTGACACTATCAGTATTCTTCGAGGGCTTAAAGAAAA 734 ||||| || ||||| ||||| |||||||| || ||||| ||| |||| || || || || Sbjct 1233 CTATGTTGCGGAGCCAAGTGTGCCTGACACCATTAGTATCCTTAGAGGACTCAAGGAGAA 1292 Query 735 ATATGAAGGACACCATGGTGTTCGTATCCAAGACAGTGCTCTTGTTGTTTCTGCTCAATT 794 ||||| ||||| |||||||| || ||||||||||| |||||| | | ||||||| | Sbjct 1293 GTATGAGGGACATCATGGTGTGCGAATCCAAGACAGAGCTCTTATAAATGCTGCTCAGCT 1352 Query 795 GTCTGCGCGTTACATCACTGCTCGACGTTTACCGGATAAGGCAATTGATTTGGTTGATGA 854 |||||| |||||||| |||| ||| | |||||||||||| |||||||||||||||||||| Sbjct 1353 GTCTGCTCGTTACATAACTGGTCGGCATTTACCGGATAAAGCAATTGATTTGGTTGATGA 1412 Query 855 GTCTTGTGC-ACATGTGAGAGTCCAGCTTGATAGTCAACCAGAAGAAATTGATTACCTTG 913 | ||||||| | |||||||||||||||||||||||||||| ||||| |||||| |||||| Sbjct 1413 GGCTTGTGCGA-ATGTGAGAGTCCAGCTTGATAGTCAACCTGAAGAGATTGATAACCTTG 1471 Query 914 AAAGAAAAACAATGCAACTA-AAGATAGAGA-TTCATGCTCTCGAAAAGG-AGAAGGACG 970 |||| || | ||||| || || || || | |||| || || | ||||| ||||||| Sbjct 1472 AAAGGAAGAGGATGCAGCTGGAA-ATTGA-ACTTCACGC-CTTGGAAAGGGAGAAGGAT- 1527 Query 971 ACAAAGCTAGCGAAGCTCGTCTT-TACGAGGTGAGGAAAGAGCTTGATGACTTGAGGGAC 1029 | || || ||| ||||||| ||| || |||||| ||||||||||||||||| |||| ||| Sbjct 1528 A-AA-GCCAGCAAAGCTCGACTTATA-GAGGTGCGGAAAGAGCTTGATGACCTGAGAGAC 1584 Query 1030 AAGCTTGAGCCTCTTACAATAAAATACAAGAATG-AGAAA-AGGATAATTAATGAAACTC 1087 |||||| ||||||| || || ||||||| ||| | ||||| || | |||| |||| | || Sbjct 1585 AAGCTTCAGCCTCTCACGATGAAATACA-GAAAGGAGAAAGAG-AGAATTGATGAGATTC 1642 Query 1088 GGAGTCTTAAACAGAAACGAGATGAGCTCATGATTGCTCTACAAGAGGCTGAGA-GACA- 1145 | || |||||||||||| |||| ||||||||| || || | || ||||| || | || | Sbjct 1643 GAAGGCTTAAACAGAAAAGAGAAGAGCTCATGTTTTCTTTGCAGGAGGCAGA-ACGA-AG 1700 Query 1146 ATATGACCTTCCTAA-AGCTGCTGATCTAAGATATGGGGCAATTCAGGAAGTAGAATCCG 1204 |||||||||| | || ||||||||||||||||||||| |||||||| ||||| ||||| | Sbjct 1701 ATATGACCTTGC-AAGAGCTGCTGATCTAAGATATGGCGCAATTCAAGAAGTGGAATCTG 1759 Query 1205 CGATAGCAAAA-TTAGAAAAGAG-TG-TTA--AAGATAACGTGATGCTTACGGAAA-CTG 1258 | || || || || ||| || | || |||| || |||||||| || |||| | | Sbjct 1760 CAATTGCCCAACTT-GAAG-GAACTTCTTCTGAAGAGAATGTGATGCTCACAGAAAAC-G 1816 Query 1259 TTGGGCCAGAGA-ATATTGCTGAGGTAGTGAGCCGATGGACTGGGATTCCAGTGACT-GC 1316 ||||||| || | | ||||||||||| |||||||| ||||| |||||||||||||| | Sbjct 1817 TTGGGCCTGA-ACACATTGCTGAGGTTGTGAGCCGTTGGACAGGGATTCCAGTGACGAG- 1874 Query 1317 ACTTGACCAGAACGAGAAGAAGAGGCTGATTTCTCTTGCTGATAGGTTGCACGAGAGAGT 1376 ||||| ||| || |||||| ||||| ||||| |||||||||||||||||| || | || Sbjct 1875 ACTTGGCCAAAATGAGAAGGAGAGGTTGATTGGTCTTGCTGATAGGTTGCATAAGCGGGT 1934 Query 1377 TGTTGGACAAGA--CGAAGCCGTGAAA-GCTGTAGCTGCGGCAATTCTAAGGTCAAGGGT 1433 ||| ||||| || | |||| || ||| || || ||| |||||||||||||||||||| Sbjct 1935 TGTGGGACA-GAATC-AAGCGGT-AAATGCAGTTTCTGAGGCAATTCTAAGGTCAAGGGC 1991 Query 1434 TGGACTAGGAAGGCCACAACAACCATCTGGTTCCTTTCTT-TTCCTCGGTCCAACTGGTG 1492 ||||| |||||||||||||| ||| |||| || || ||| ||||| || |||||||||| Sbjct 1992 AGGACTTGGAAGGCCACAACAGCCAACTGGATCATT-CTTATTCCTTGGACCAACTGGTG 2050 Query 1493 TTGGTAAAACTGAGCTGGCTAAAGCTCTTGCTGAGCAACTCTTTTACGATGAAAACCTAC 1552 |||| ||||||||||| || || |||||||||||||| || ||| | ||||||||||| | Sbjct 2051 TTGGCAAAACTGAGCTCGCCAAGGCTCTTGCTGAGCAGCTGTTTGATGATGAAAACCT-C 2109 Query 1553 TT-GTTAGGCTTGATATGTCGGAGTATATGGA 1583 || ||| || ||||||||||||| |||||||| Sbjct 2110 TTAGTTCGGATTGATATGTCGGAATATATGGA 2141 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 79969468185 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5