BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493451
Length=1458
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14550.1 | Symbols: IAA14, SLR | indole-3-acetic acid induci... 1906 0.0
AT3G23050.1 | Symbols: IAA7, AXR2 | indole-3-acetic acid 7 | ch... 590 2e-167
> AT4G14550.1 | Symbols: IAA14, SLR | indole-3-acetic acid inducible
14 | chr4:8347822-8350019 REVERSE LENGTH=1482
Length=1482
Score = 1906 bits (1032), Expect = 0.0
Identities = 1347/1488 (91%), Gaps = 66/1488 (4%)
Strand=Plus/Plus
Query 2 CAAGAGTTATCgagagagagagaAAACATATTTTGATTTAACAAAAATATAGACAAAGCA 61
|||||||||||||||||||||||||||||||| |||||||| | | |||||||| ||||
Sbjct 30 CAAGAGTTATCGAGAGAGAGAGAAAACATATTCTGATTTAAGACATATATAGAC--AGCA 87
Query 62 AGAAGAG--ATGAACCTTAAGGAGACGGAGCTTTGTCTTGGCCTCCCTGGAGGTGGTGAA 119
||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 88 AGAAGAGATATGAACCTTAAGGAGACGGAGCTTTGTCTTGGCCTCCCCGGAGGCACTGAA 147
Query 120 ACCGTTGAAAGTCCGTCCAAGTCGGGCGTAGGTAACAAGAGAGGCTTCTCTGAGACTGTT 179
||||||||||||||| |||||||||| || || ||||||||||||||||| ||||| |||
Sbjct 148 ACCGTTGAAAGTCCGGCCAAGTCGGGTGTTGGGAACAAGAGAGGCTTCTCCGAGACCGTT 207
Query 180 GGTCTCAAACTCAATCTTCAATCTAACAAACAAGGACCTGTGGATCTCAACGTTAATGGA 239
| ||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 208 GATCTCAAACTTAATCTTCAATCTAACAAACAAGGACATGTGGATCTCAACACTAATGGA 267
Query 240 GCTCCCAAGGAGAAGACCTTCCTTAAAGACCCTTCTAAGCCTCCTGCTAAAGCACAAGTG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 GCTCCCAAGGAGAAGACCTTCCTTAAAGACCCTTCTAAGCCTCCTGCTAAAGCACAAGTG 327
Query 300 GTGGGTTGGCCACCGGTGAGGAACTACCGAAAAAATGTTATGGCTAATCAGAAGAGCGGC 359
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 328 GTGGGTTGGCCACCGGTGAGGAACTACCGGAAAAATGTTATGGCTAATCAGAAGAGCGGC 387
Query 360 GAAGCGGAGGAGGCAATGAGTAGTGGTGGAGGAACCGTCGCCTTTGTGAAGGTTTCCATG 419
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 GAAGCAGAGGAGGCAATGAGTAGTGGTGGAGGAACCGTCGCCTTTGTGAAGGTTTCCATG 447
Query 420 GATGGAGCTCCTTATCTTCGGAAGGTTGACCTCAAGATGTACAACAGCTACAAGAATCTC 479
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 448 GATGGAGCTCCTTATCTTCGGAAGGTTGACCTCAAGATGTACACCAGCTACAAGGATCTC 507
Query 480 TCTGATGCCTTGGCCAAAATGTTCAGCTCCTTTACCATGGGGAGTTATGGAGCACAAGGG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 TCTGATGCCTTGGCCAAAATGTTCAGCTCCTTTACCATGGGGAGTTATGGAGCACAAGGG 567
Query 540 ATGATAGATTTCATGAACGAGAGTAAAGTGATGGATCTGTTGAACAGTTCTGAGTATGTT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 ATGATAGATTTCATGAACGAGAGTAAAGTGATGGATCTGTTGAACAGTTCTGAGTATGTT 627
Query 600 CCAAGCTACGAGGACAAAGATGGTGACTGGATGCTCGTTGGTGATGTCCCCTGGCCGATG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 CCAAGCTACGAGGACAAAGATGGTGACTGGATGCTCGTTGGTGATGTCCCCTGGCCGATG 687
Query 660 TTTGTCGAGTCATGCAAACGTTTGCGCATAATGAAAGGATCCGAAGCAATTGGACTTGCT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 TTTGTCGAGTCATGCAAACGTTTGCGCATAATGAAAGGATCCGAAGCAATTGGACTTGCT 747
Query 720 CCAAGAGCGATGGAGAAGTTCAAGAACAGATCATGAACAAACAAAAAAGA------T-T- 771
|||||||| |||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 748 CCAAGAGCAATGGAGAAGTTCAAGAACAGATCATGAACAAAAAAAAAAGAGGACAATATG 807
Query 772 --T-G-tttttttt----GGTATTGTTATGATCATATGTGTTTGTAATTTTTAATATTGG 823
| | |||||||| ||||||||||||||||| ||| ||| |||||| ||||||||
Sbjct 808 CATTGATTTTTTTTTTTTGGTATTGTTATGATCATGTGT-TTT-TAATTTAAAATATTGG 865
Query 824 AAGTATATAGGAAAATAGAATTGTCTACGAAAACAAATCACTTGAAATATGTCTGTGTTT 883
||||||||||||||||| |||||| |||||||| |||| |||| |||||||||| | |||
Sbjct 866 AAGTATATAGGAAAATATAATTGTTTACGAAAA-AAATAACTTTAAATATGTCTTTTTTT 924
Query 884 TTGTT---GAAATTAGTCTGTGTTTTTGTTTTCATCTCTTAATTAGTCGAAATCAATTTT 940
|| || ||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 925 TTTTTTTTGAAATTAGTCTGTGTTTTTGTTTTCATCTCTTAATTAGTAGAAATCATTTTT 984
Query 941 TAATATGTAATAGTGATAGTAATTCTATAGAGTTCtt-tttttGCTATTTGAAATGCTAA 999
||||||||||| |||||||||| |||||||||||| | |||||||||||| |||| |||
Sbjct 985 TAATATGTAATTGTGATAGTAAATCTATAGAGTTCGTATTTTTGCTATTTAAAATT-TAA 1043
Query 1000 A-TGCTAACACTATATATAATTTATGATAGGTAAATTTACGTTAAAGTAATTTATCTCCA 1058
| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1044 AATGCTAATACTATATATAATTTATGATAGGTAAATTTACGTTAAA-TAATTTATCTCCA 1102
Query 1059 CTTTTCTAATGATAACTACTTTATGGtttttttcgtcgttattttctcgtatattttctt 1118
|||||| ||||||||| || ||||| || |||||||||| | |||| |||
Sbjct 1103 CTTTTC---------CTACTTTATTATTCTTTTCCTCTTTATTTTCTCATTTATTGGCTT 1153
Query 1119 tacagattaatatctatatattttaaatttGTAACTATGTTTT-ATGTATCTAAAAACAT 1177
||||||||| ||| | | | || ||||||||||| |||| ||||||||||||||||
Sbjct 1154 TACAGATTA-TAT-T-TG-A----AA-TTTGTAACTAT-TTTTGATGTATCTAAAAACAT 1203
Query 1178 TTCACATAACAATTTCTTAAGAAAAATAAGAAATA-TGTTGGTATATTTTT-GAAAGTAA 1235
||||||||||||||||||||||||| ||||||| | ||||||||||||||| || |||
Sbjct 1204 TTCACATAACAATTTCTTAAGAAAACTAAGAAA-ACTGTTGGTATATTTTTTGAC--TAA 1260
Query 1236 CAA-G-TTACCATTCAATATTT-Gaaaaaaactaaaatcttcaaaaacaaaacca-ttat 1291
|| | || ||| || |||| |||| |||||||||||||| | |||||||| || |
Sbjct 1261 -AATGGTTTCCAAA-AAGATTTTGAAACGAACTAAAATCTTCATTA-CAAAACCAATTTT 1317
Query 1292 aaaacctacaaaacCAAttttcatggttttaagttttcttttttctttcCTAATTATGTG 1351
||||| |||||||| ||| ||||||||||||||||| ||||||||||||||| ||| |||
Sbjct 1318 AAAAC-TACAAAACAAATATTCATGGTTTTAAGTTT-CTTTTTTCTTTCCTAGTTACGTG 1375
Query 1352 GGATTAAATCATTAAATTCAGGACCCATGAGAGGCGTAGGGAACAAGAGCATGTGCATGT 1411
||| || | |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1376 GGAATACGTTATTAAATTCAGGACCCATGAGAGGCGTAGGGAACAAGAGCATGTGCATAT 1435
Query 1412 TCATGGGTCTTTCAAATTCAGTCCATCCCCATT-ATGCTAATGTACCC 1458
|||||||||||||||||||||||||||| | || |||||||||| |||
Sbjct 1436 TCATGGGTCTTTCAAATTCAGTCCATCCTC-TTCATGCTAATGTGCCC 1482
> AT3G23050.1 | Symbols: IAA7, AXR2 | indole-3-acetic acid 7 |
chr3:8194679-8197153 FORWARD LENGTH=1258
Length=1258
Score = 590 bits (319), Expect = 2e-167
Identities = 598/726 (82%), Gaps = 46/726 (6%)
Strand=Plus/Plus
Query 69 ATGAACCTTAAGGAGACGGAGCTTTGTCTTGGCCTCCCTGGAGGTGGTGAAACCGTTGAA 128
|||||||| |||| |||||||| ||||| |||||||| || || | |||| | |||||
Sbjct 105 ATGAACCTCAAGGCCACGGAGCTCTGTCTCGGCCTCCCCGGCGGCGCTGAAGCAGTTGAG 164
Query 129 AGTCCGT-CCAAGTCGGGC-GTAGGTAA-CAAGAGAGGCTTCTCTGAGACTGTTGGTCTC 185
||||| | |||| || ||| || || || ||||||||||||||| || || |||| ||||
Sbjct 165 AGTCC-TGCCAAATC-GGCGGT-GGGAAGCAAGAGAGGCTTCTCCGAAACCGTTGATCTC 221
Query 186 AAACTCAATCTTCAATCTAACAAACAAGGAC-CTGTGGATCTC---AACGTTAATGGAGC 241
| ||||||||||||||||||||| |||| | | || |||||| |||||| || |
Sbjct 222 ATGCTCAATCTTCAATCTAACAAAGAAGG-CTCCGTTGATCTCAAAAACGTTTCTGCTGT 280
Query 242 TCCCAAGGAGAAGACCT-TCCTTAAAGACCCTTCTAAGCCTCCTGCTAAAGCACAAGTGG 300
|||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||
Sbjct 281 TCCCAAGGAGAAGA-CTACCCTTAAAGATCCTTCTAAGCCTCCTGCTAAAGCACAAGTGG 339
Query 301 TGGGTTGGCCACCGGTGAGGAACTAC-CGAA-AAAATGTTATGGCTAATCAGAAGAGC-G 357
|||| |||||||| |||||||||||| ||| || ||| ||| || | ||||||| | |
Sbjct 340 TGGGATGGCCACCTGTGAGGAACTACAGGAAGAACATG--ATGACTCAGCAGAAGACCAG 397
Query 358 --GCGAAGCGGAGGAGG-CA--A-TGAGTA------G-----TGGTGGAGGA--A-CC-- 395
| | |||||||||| || | |||| | | |||||||||| | ||
Sbjct 398 TAGTGGTGCGGAGGAGGCCAGCAGTGAGAAGGCCGGGAACTTTGGTGGAGGAGCAGCCGG 457
Query 396 -GTCGCCTTTGTGAAGGTTTCCATGGATGGAGCTCCTTATCTTCGGAAGGTTGACCTCAA 454
| || ||| |||||||| |||||||| || ||||| ||||| |||| |||||||||||
Sbjct 458 AGCCGGCTTGGTGAAGGTCTCCATGGACGGTGCTCCATATCTGAGGAAAGTTGACCTCAA 517
Query 455 GATGTACAACAGCTACAAGAATCTCTCTGATGCCTTGGCCAAAATGTTCAGCTCCTTTAC 514
||||||||| |||||| || |||| |||||||| ||||||||||||||||||||||||||
Sbjct 518 GATGTACAAAAGCTACCAGGATCTTTCTGATGCATTGGCCAAAATGTTCAGCTCCTTTAC 577
Query 515 CATGGGGAGTTATGGAGCACAAGGGATGATAGATTTCATGAACGAGAGTAAAG-TGATGG 573
||||| | |||||||||||||| ||||||||||||||||||||||| ||| | |||
Sbjct 578 TATGGGAAACTATGGAGCACAAGGAATGATAGATTTCATGAACGAGAG-CAAGCTAATGA 636
Query 574 ATCTGTTGAACAGTTCTGAGTATGTTCCAAGCTACGAGGACAAAGATGGTGACTGGATGC 633
||||| |||| || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 637 ATCTGCTGAATAGCTCTGAGTATGTGCCAAGCTACGAGGACAAAGATGGTGACTGGATGC 696
Query 634 TCGTTGGTGATGTCCCCTGGCCGATGTTTGTCGAGTCATGCAAACGTTTGCGCATAATGA 693
||||||| |||||||| ||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 697 TCGTTGGCGATGTCCCATGGGAAATGTTTGTCGAGTCTTGCAAACGTTTGCGCATTATGA 756
Query 694 AAGGATCCGAAGCAATTGGACTTGCTCCAAGAGCGATGGAGAAGT--T-CAAGAACAGAT 750
| ||||| |||||| ||||||||||||| ||||| |||||||||| | |||||||||||
Sbjct 757 AGGGATCTGAAGCAGTTGGACTTGCTCCGAGAGCAATGGAGAAGTACTGCAAGAACAGAT 816
Query 751 CATGAA 756
| ||||
Sbjct 817 CTTGAA 822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71887180440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5