BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493452
Length=591
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14540.1 | Symbols: NF-YB3 | nuclear factor Y, subunit B3 | ... 941 0.0
> AT4G14540.1 | Symbols: NF-YB3 | nuclear factor Y, subunit B3
| chr4:8344616-8345218 FORWARD LENGTH=603
Length=603
Score = 941 bits (509), Expect = 0.0
Identities = 566/592 (96%), Gaps = 9/592 (2%)
Strand=Plus/Plus
Query 1 AAAACATCTCTCTCTCTTTCTCCACCTTTTGTCTCCTCGATCTAAA-ATGGCGGATTCGG 59
||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1 AAAACATCTATCTCTCTTTCTCGACCTTTTGTCTCCTCGATCTAAAGATGGCGGATTCGG 60
Query 60 ACAACGATTCAGGAGGACACAAAGACGGTGGAAATGCTTCAACACGTGAGCAAGATAGGT 119
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 ACAACGATTCAGGAGGACACAAAGACGGTGGAAATGCTTCGACACGTGAGCAAGATAGGT 120
Query 120 TTCTACCGATCGCTAACGTTAGCAGGATCATGAAGAAAGCACTTCCGGCGAACGCAAAAA 179
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 TTCTACCGATCGCTAACGTTAGCAGGATCATGAAGAAAGCACTTCCTGCGAACGCAAAAA 180
Query 180 TCTCCAAGGACGCTAAAGAAACGGTTCAAGAGTGTGTATCGGAATTCATAAGTTTCATCA 239
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTCTAAGGATGCTAAAGAAACGGTTCAAGAGTGTGTATCGGAATTCATAAGTTTCATCA 240
Query 240 CCGGTGAAGCTTCTGACAAGTGTCAGAGAGAGAAGAGGAAGACAATCAACGGTGACGATC 299
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCGGTGAGGCTTCTGACAAGTGTCAGAGAGAGAAGAGGAAGACAATCAACGGTGACGATC 300
Query 300 TTCTTTGGGCGATGACTACGCTAGGGTTTGAGGATTACGTGGAGCCTCTAAAGGTTTATC 359
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 301 TTCTTTGGGCGATGACTACGCTAGGGTTTGAGGACTACGTGGAGCCTCTCAAGGTTTATC 360
Query 360 TGCAAAAATATAGGGAGGTGGAAGGTGAGAAGACTACTACGGCCGGGAGACTAGGCGATA 419
||||||| ||||||||||||||||| ||||||||||||||||| ||||||| ||||||||
Sbjct 361 TGCAAAAGTATAGGGAGGTGGAAGGAGAGAAGACTACTACGGCAGGGAGACAAGGCGATA 420
Query 420 AGGAAGGTGGAGGAGGCGGCGGTGGAGCTGGAAGTGGAAGTGGAGGAGCTCCGATGTACG 479
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGGAAGGTGGAGGAGGAGGCGGTGGAGCTGGAAGTGGAAGTGGAGGAGCTCCGATGTACG 480
Query 480 GTGGTGGCATGGTGACTACGATGGGGCATCAATTTTCTCATCATTTTTCTTAATTTGTTA 539
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || |
Sbjct 481 GTGGTGGCATGGTGACTACGATGGGACATCAATTTTCCCATCATTTTTCTTAATT-GT-A 538
Query 540 ATTGTAAAATGATATAAGCAAATTTTCATTTTTATTAATTAATGATATATAT 591
| || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 539 A----AA--TGATAAAAGCAAATTTTCATTTTTATTAATTAATGATATATAT 584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28432527202
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5