BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493454
Length=725
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14520.1 | Symbols: | DNA-directed RNA polymerase II-relate... 881 0.0
> AT4G14520.1 | Symbols: | DNA-directed RNA polymerase II-related
| chr4:8341418-8343234 FORWARD LENGTH=883
Length=883
Score = 881 bits (477), Expect = 0.0
Identities = 577/625 (92%), Gaps = 7/625 (1%)
Strand=Plus/Plus
Query 105 AGGTGACAGATAAACCA-G-ATGTTTTCAGAAGTAGAAATGGCTCGGGATGTGGCTATAT 162
|||| ||||||||| || | |||||||||||||||||||||||||| || ||||||||||
Sbjct 101 AGGTAACAGATAAA-CACGAATGTTTTCAGAAGTAGAAATGGCTCGAGACGTGGCTATAT 159
Query 163 GTGCCAATCACTTGAATGGCCAAGCGCCGCACCATCAGATTCTAGGCAGACTACTCAAAG 222
||||||| ||||||||||||||| |||||||||| | ||||||| ||||||||||| |||
Sbjct 160 GTGCCAAACACTTGAATGGCCAATCGCCGCACCAACCGATTCTATGCAGACTACTCCAAG 219
Query 223 ATCTAATACACGAGAAAGCATGCAGGGAACACGGATTCTATCTCGGTATCACCGCTCTGA 282
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct 220 ATCTAATACACGAGAAAGCGTGCAGGGAACACGGATTCTATCTCGGCATCACCGCTCTAA 279
Query 283 AAAGCATCGGTAACAACAAGAACAACAATGA-CGAGAACGAAGACAATCACCAAGCACAT 341
|||||||||||||||||||||||||||| | ||| |||||| ||||||| |||||| |
Sbjct 280 AAAGCATCGGTAACAACAAGAACAACAA-CATCGACAACGAAAACAATCATCAAGCAAAA 338
Query 342 ATCCTCACATTCCCAGTGTCCTTCACATGCCGCACTTTCTTGCCTGCTAGAGGAGATATC 401
|||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 339 ATCCTCACATTCCCGGTGTCCTTCACATGCCGCACATTCTTGCCTGCAAGAGGAGATATC 398
Query 402 TTGCAAGGGACTGTTAAAAAAGTGTTGTGGAACGGAGCTTTTATCAGGTCAGGACCACTC 461
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 399 TTGCAAGGGACTGTAAAAAAAGTGTTGTGGAACGGAGCTTTTATCAGGTCAGGACCACTC 458
Query 462 AGATACGCATACCTTTCGTTCTTGAAAATGCCGGATTACCATTATGTCCACTCACCATTG 521
|||||||||||||| || ||||||||||||| |||| |||||||||||||||||||||
Sbjct 459 AGATACGCATACCTCTCACTCTTGAAAATGCCACATTATCATTATGTCCACTCACCATTG 518
Query 522 TTGGAGGACGAGAAGCCGTATTTTCAGAAAGACGATCTCTCAAAGATTGCTGTTGGAGTT 581
| |||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 519 TCGGAGGACGAGAAACCGCATTTTCAGAAAGACGACCTCTCAAAGATTGCTGTTGGAGTT 578
Query 582 GTTGTGCGGTTTGGGGTGTTGGCTGTGCGGTTTAAGGAGA-AGCCACACAAGAGAAGAAA 640
|||||||||||| ||||||||||||||||||||| |||| | |||||||||||||||||
Sbjct 579 GTTGTGCGGTTTCAGGTGTTGGCTGTGCGGTTTAAAGAGAGA-CCACACAAGAGAAGAAA 637
Query 641 TGACTATTATGTTCTTGCGACTTTGGAACGCAACGATTCATTTGGTCCCATCTCTCTTAC 700
||||||||||||||||| ||||||||| |||| | ||||||||||||||||||||||||
Sbjct 638 CGACTATTATGTTCTTGCAACTTTGGAAGGCAATGGTTCATTTGGTCCCATCTCTCTTAC 697
Query 701 AGGGTCGGATGAGCCATACATGTAA 725
|||||| ||||||||||||||||||
Sbjct 698 AGGGTCAGATGAGCCATACATGTAA 722
Score = 93.5 bits (50), Expect = 3e-18
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 48 GCCTCTCTTTTACCGTACGATTCTTCGGGCTCTATGAGATTTCGAATTTTCTTCTCAAG 106
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3 GCCTCTCTTTGCCCGTACGATTCTTCGGGCTCTATGAGATATCGAATTTTCTTCTCAAG 61
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35163902900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5