BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493454 Length=725 Score E Sequences producing significant alignments: (Bits) Value AT4G14520.1 | Symbols: | DNA-directed RNA polymerase II-relate... 881 0.0 > AT4G14520.1 | Symbols: | DNA-directed RNA polymerase II-related | chr4:8341418-8343234 FORWARD LENGTH=883 Length=883 Score = 881 bits (477), Expect = 0.0 Identities = 577/625 (92%), Gaps = 7/625 (1%) Strand=Plus/Plus Query 105 AGGTGACAGATAAACCA-G-ATGTTTTCAGAAGTAGAAATGGCTCGGGATGTGGCTATAT 162 |||| ||||||||| || | |||||||||||||||||||||||||| || |||||||||| Sbjct 101 AGGTAACAGATAAA-CACGAATGTTTTCAGAAGTAGAAATGGCTCGAGACGTGGCTATAT 159 Query 163 GTGCCAATCACTTGAATGGCCAAGCGCCGCACCATCAGATTCTAGGCAGACTACTCAAAG 222 ||||||| ||||||||||||||| |||||||||| | ||||||| ||||||||||| ||| Sbjct 160 GTGCCAAACACTTGAATGGCCAATCGCCGCACCAACCGATTCTATGCAGACTACTCCAAG 219 Query 223 ATCTAATACACGAGAAAGCATGCAGGGAACACGGATTCTATCTCGGTATCACCGCTCTGA 282 ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| | Sbjct 220 ATCTAATACACGAGAAAGCGTGCAGGGAACACGGATTCTATCTCGGCATCACCGCTCTAA 279 Query 283 AAAGCATCGGTAACAACAAGAACAACAATGA-CGAGAACGAAGACAATCACCAAGCACAT 341 |||||||||||||||||||||||||||| | ||| |||||| ||||||| |||||| | Sbjct 280 AAAGCATCGGTAACAACAAGAACAACAA-CATCGACAACGAAAACAATCATCAAGCAAAA 338 Query 342 ATCCTCACATTCCCAGTGTCCTTCACATGCCGCACTTTCTTGCCTGCTAGAGGAGATATC 401 |||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 339 ATCCTCACATTCCCGGTGTCCTTCACATGCCGCACATTCTTGCCTGCAAGAGGAGATATC 398 Query 402 TTGCAAGGGACTGTTAAAAAAGTGTTGTGGAACGGAGCTTTTATCAGGTCAGGACCACTC 461 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 399 TTGCAAGGGACTGTAAAAAAAGTGTTGTGGAACGGAGCTTTTATCAGGTCAGGACCACTC 458 Query 462 AGATACGCATACCTTTCGTTCTTGAAAATGCCGGATTACCATTATGTCCACTCACCATTG 521 |||||||||||||| || ||||||||||||| |||| ||||||||||||||||||||| Sbjct 459 AGATACGCATACCTCTCACTCTTGAAAATGCCACATTATCATTATGTCCACTCACCATTG 518 Query 522 TTGGAGGACGAGAAGCCGTATTTTCAGAAAGACGATCTCTCAAAGATTGCTGTTGGAGTT 581 | |||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||| Sbjct 519 TCGGAGGACGAGAAACCGCATTTTCAGAAAGACGACCTCTCAAAGATTGCTGTTGGAGTT 578 Query 582 GTTGTGCGGTTTGGGGTGTTGGCTGTGCGGTTTAAGGAGA-AGCCACACAAGAGAAGAAA 640 |||||||||||| ||||||||||||||||||||| |||| | ||||||||||||||||| Sbjct 579 GTTGTGCGGTTTCAGGTGTTGGCTGTGCGGTTTAAAGAGAGA-CCACACAAGAGAAGAAA 637 Query 641 TGACTATTATGTTCTTGCGACTTTGGAACGCAACGATTCATTTGGTCCCATCTCTCTTAC 700 ||||||||||||||||| ||||||||| |||| | |||||||||||||||||||||||| Sbjct 638 CGACTATTATGTTCTTGCAACTTTGGAAGGCAATGGTTCATTTGGTCCCATCTCTCTTAC 697 Query 701 AGGGTCGGATGAGCCATACATGTAA 725 |||||| |||||||||||||||||| Sbjct 698 AGGGTCAGATGAGCCATACATGTAA 722 Score = 93.5 bits (50), Expect = 3e-18 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 48 GCCTCTCTTTTACCGTACGATTCTTCGGGCTCTATGAGATTTCGAATTTTCTTCTCAAG 106 |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 3 GCCTCTCTTTGCCCGTACGATTCTTCGGGCTCTATGAGATATCGAATTTTCTTCTCAAG 61 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35163902900 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5