BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493456
Length=1711
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14500.1 | Symbols: | Polyketide cyclase/dehydrase and lipi... 2388 0.0
AT3G23080.1 | Symbols: | Polyketide cyclase/dehydrase and lipi... 787 0.0
> AT4G14500.1 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr4:8334176-8337273 FORWARD
LENGTH=1768
Length=1768
Score = 2388 bits (1293), Expect = 0.0
Identities = 1622/1769 (92%), Gaps = 69/1769 (4%)
Strand=Plus/Plus
Query 2 AATCACCAAACTCAATTAAAT----A-AAAACAA--ATTA-T-T--CTT-ATC-TCTTCT 48
||||||||||||||||||||| | |||| || |||| | | ||| || ||||||
Sbjct 10 AATCACCAAACTCAATTAAATAAAAAGAAAAAAATTATTATTATCCCTTCTTCTTCTTCT 69
Query 49 TCGTCTTCGTCTTCGATTCTCCTGATTCATGTCGTTTAAATTTTTGA-CGATC-TCAGAA 106
||||||||||||| |||||||||||||||||||| |||||||||| | ||||| || |||
Sbjct 70 TCGTCTTCGTCTTTGATTCTCCTGATTCATGTCGCTTAAATTTTT-AGCGATCTTC-GAA 127
Query 107 TCCCATTTTCCTTCGGGAATCTGACA--TTTTCTC--G---------TATCCAAATC-G- 151
|||||||||||||||||||||||||| ||||||| | |||||||||| |
Sbjct 128 TCCCATTTTCCTTCGGGAATCTGACATTTTTTCTCGGGAAATTTTTTTATCCAAATCGGA 187
Query 152 G---AG-A-CG----T-GAGAAT-CGCTATGGATGAGACGTATTTTGATCTATTGAATTT 200
| || | || | |||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 188 GTAAAGTATCGAATCTAGAGAATCCGCTATGGATGAGACCTATTTTGATCTATTGAATTT 247
Query 201 CTTGAAGAATCCCTCTTTTACAGAGACATTTGTCGACATCTTACTATGTGCAGTTCCGAT 260
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 248 CTTTAAGAATCCCTCTTTTACAGAGACATTTGTCGACATCTTACTATGCGCAGTTCCGAT 307
Query 261 TTGGCTCGCCGTCATGATCGGGTTATTAATCGGATGGTCTTGGCGTCCAAGATGGACCGG 320
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 TTGGCTCGCCGTTATGATCGGGTTATTAATCGGATGGTCTTGGCGTCCAAGATGGACCGG 367
Query 321 TTTGATCTATTTAGGGTTTCGGTCTAAGCTTCGGTTTCTATGGACTGCACCTCCTGGATT 380
||||||||||||||||||||| ||||||||||||||| ||||||| ||||| ||||| ||
Sbjct 368 TTTGATCTATTTAGGGTTTCGTTCTAAGCTTCGGTTTTTATGGACCGCACCGCCTGGGTT 427
Query 381 TGGTGCTCGTAGGCTTTGGCTTGCTTTCACCGCTCTTTCTGCTTTCTCCGTTTGTCGCAC 440
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 428 TGGTGCTCGTCGGCTTTGGCTTGCTTTCACCGCTCTCTCTGCTTTCTCCGTTTGCCGAAC 487
Query 441 CATCTGGTCAAGGAATGATACAAGAGCTAATAAATCGTCGACCGGTTCAG---C-T---- 492
|||||||||||||||||| || ||||||||||||||| |||||||||||| | |
Sbjct 488 CATCTGGTCAAGGAATGACACCAGAGCTAATAAATCGGCGACCGGTTCAGCTTCGTCGCA 547
Query 493 ----CCTGTGGAAGAGAGTGATGAATCAGGATTAGTCTCAAGAGGTAGCGATAACATGAG 548
||||| || || | ||||||||||||||| | ||||||||||||||||||| ||
Sbjct 548 GACGCCTGTTGAGGATAATGATGAATCAGGATTGGCCTCAAGAGGTAGCGATAACGGGAC 607
Query 549 GGTGACAGAGGATATTGTGACAGAGAATGATTTAGAGCATCTGCTTCAATTGCTTGAAGT 608
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 608 GGTGACAGAGGATATTGTGACAGAGAATGATTTAGAGCATCTGCTTCAGCTGCTTGAAGT 667
Query 609 TGGGAATGCAGCTATGGAATGGCAATCTATGATGGATAAGACTACTCCAAACATGAGCTA 668
||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 668 TGGAAATGCAGCTTTGGAATGGCAATCTATGATGGATAAGACTACTCCAAATATGAGCTA 727
Query 669 CCAGGCTTGGCGTCATGAGCCTGAGACAGGTCCTGTTATTTATCGCAGTCGAACTGTGTT 728
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 728 CCAGGCTTGGCGTCATGAGCCTGAGACAGGTCCTGTTATTTATCGCAGCCGGACTGTGTT 787
Query 729 TGAGGATGCAACTCCAGATATTGTTAGGGATTTCTTCTGGGATGATGAGTTTCGACCTAA 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 TGAGGATGCAACTCCAGATATTGTTAGGGATTTCTTCTGGGATGATGAGTTTCGACCTAA 847
Query 789 ATGGGATTTTATGCTTGCCAACTTCAAAACTTTGGAGGAGGACACTCAGACAGGAACGAT 848
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 848 ATGGGATTTCATGCTTGCCAACTTCAAAACGTTGGAGGAGGACACTCAGACAGGAACAAT 907
Query 849 GATTGTTCAGTGGAGAAAAAAGTTTCCATTTTTCTGCAGCGACCGAGAGTATATCATTGG 908
||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 908 GATTGTTCAGTGGAGAAAAAAGTTTCCTTTTTTCTGTAGTGACCGAGAGTATATCATTGG 967
Query 909 CCGGAGAATATGGGAGTCTGGAAAGAAGTATTACTGTGTGACAAAGGGAGTTCCTTATCC 968
||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 968 CCGGAGAATATGGGAGTCTGGGAAGAAGTATTATTGTGTCACAAAGGGAGTTCCTTATCC 1027
Query 969 AGCTCTACCAAAGCGTGATAAGCCGAGGCGTGTTGAGCTTTATTTCTCAAGTTGGGTTAT 1028
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1028 AGCTCTACCAAAGCGTGATAAGCCAAGGCGTGTTGAGCTTTATTTCTCAAGTTGGGTTAT 1087
Query 1029 CAGAGCAGTTGAATCCCGAAAAGGAGATGG--A-CTAACAGCTTGTGAAGTAT-CCTTAG 1084
|||||| ||||||||||||||||||||||| | | ||| ||||||||||| | |||| |
Sbjct 1088 CAGAGCGGTTGAATCCCGAAAAGGAGATGGACAGCAAACGGCTTGTGAAGTTTCCCTT-G 1146
Query 1085 TCCACTACGAAGACATGGGAATCCCAAAAGATGTAGCAAAGTTAGGTGTCCGTCATGGCA 1144
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1147 TCCACTACGAAGACATGGGCATCCCAAAAGACGTAGCAAAGTTAGGTGTCCGTCATGGCA 1206
Query 1145 TGTGGGGAGCTGTAAAGAAGCTAAACTCCGGTTTACGAGCATACCAATCTGCCAGAAAAT 1204
||||||||||||| |||||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 1207 TGTGGGGAGCTGTCAAGAAGCTAAACTCTGGTTTACGAGCGTACCAATCCGCCAGAAAAT 1266
Query 1205 CAGACTCATCTCTATCCCGGATCGCCCAAATGGCAAGAATCACTACAAAACTGAACATGG 1264
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 CAGACTCATCTCTATCTCGGATCGCCCAAATGGCAAGAATCACTACAAAACTGAACATGG 1326
Query 1265 ATTCTGCAGAATCATCTTCAAGAGATGAAGACAGAAGCAGAGCAATGGACTATGCAAGGA 1324
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
Sbjct 1327 ATTCTGCAGAATCATCTTCAAGAGATGAAGACAGAAGCAGAGCAATGGAATATGC--G-A 1383
Query 1325 GACAACGGGACCATTTGAGAATGGACTGGAAATGGGTTGTTGTAGGAGGTGTCGCATTGG 1384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384 GACAACGGGACCATTTGAGAATGGACTGGAAATGGGTTGTTGTAGGAGGTGTCGCATTGG 1443
Query 1385 CTTGTGGTCTTCACACTGGGATCATTGGTAAGGCTTTACTGGCTGGAGCTGGCCAGAGAC 1444
||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1444 CTTGTGGCCTTCACTCTGGGATCATTGGCAAGGCTTTACTGGCTGGAGCTGGCCAGAGAC 1503
Query 1445 TGGCGCGTAGGTGAAAAACCTTGTCATATTCTTATTATATCTTCCCTTGACAGAAAAGAA 1504
|||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1504 TGGCTCGTAGGTGAGAAACCTTGTCGTATTCTTATTATATCTTCCCTTGACAGAAAAGA- 1562
Query 1505 GAA-CATATACATATAACAAAGGGAAATGTATTCTTCTTGCAACTCCTATGAGAAAGGCA 1563
||| ||||| ||||||| |||||||||||||| || ||||||||||| |||||| ||||
Sbjct 1563 GAAACATATGCATATAATTAAGGGAAATGTATTATTTTTGCAACTCCTCTGAGAAGGGCA 1622
Query 1564 TGTGGTTTTGACGGTGAACCATGTAGAGTAGTAGTTTTAAACTATGGAGTCTTTTAAGTT 1623
|||||||||| |||||||||||||||||||||| |||||||||||||||| | |||||
Sbjct 1623 TGTGGTTTTGGTGGTGAACCATGTAGAGTAGTAGCTTTAAACTATGGAGTCAT--AAGTT 1680
Query 1624 CTTTGAGTTCTATCTCGTTAC-ACAGGATAGTGAGATATGTATTTTATAAACTATATGAA 1682
|||||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 1681 ATTTGAGTTCTATCTTGT-ACCACAGGATAGTGAGATATGTATTTTATAAACTATATGAA 1739
Query 1683 TCTACATAGCTTCTAAAAGCTTAAAATCT 1711
||||||||||||||||||||||||| |||
Sbjct 1740 TCTACATAGCTTCTAAAAGCTTAAATTCT 1768
> AT3G23080.1 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr3:8207387-8209270 REVERSE
LENGTH=1574
Length=1574
Score = 787 bits (426), Expect = 0.0
Identities = 762/921 (83%), Gaps = 36/921 (4%)
Strand=Plus/Plus
Query 559 GATATTGTGACAGAGAATGATTTAGAGCATCTGCTT-CAAT-TGCTTGAAGTTGGGAATG 616
||| ||||||||||||| |||||||||||| || || | || ||||||||| ||| ||||
Sbjct 444 GATGTTGTGACAGAGAAGGATTTAGAGCATTTG-TTGC-ATCTGCTTGAAGCTGGAAATG 501
Query 617 C-AGCTATGGAATGGCAATCTATGATGGATAAGACTACTCCAAACATGAGCTACCAGGCT 675
| || | | || ||||||||||||||||||||| ||||||| || |||||||| || |||
Sbjct 502 CTAG-TTTTGAGTGGCAATCTATGATGGATAAGTCTACTCCGAATATGAGCTATCAAGCT 560
Query 676 TGGCGTCATGAGCCTGAGACAGGTCCTGTTATTTATCGCAGTCGAACTGTGTTTGAGGAT 735
||||||||||||||||||| |||||||||| ||||||| ||||||||||| |||||||||
Sbjct 561 TGGCGTCATGAGCCTGAGATAGGTCCTGTTGTTTATCGTAGTCGAACTGTTTTTGAGGAT 620
Query 736 GCAACTCCAGATATTGTTAGGGATTTCTTCTGGGATGATGAGTTTCGACCTAAATGGGAT 795
| ||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 621 GTAACACCAGACATTGTTAGGGATTTCTTCTGGGACGATGAGTTTCGACCTAAATGGGAT 680
Query 796 TTTATGCTTGCCAACTTCAAAACTTTGGAGGAGGA-CACTCAGACAGGAACGATGATTGT 854
||||||||| ||||||||||||| ||||| || | || |||||||||| | |||||
Sbjct 681 ACTATGCTTGCTTACTTCAAAACTTTAGAGGAAGATC-CTAAGACAGGAACTACCATTGT 739
Query 855 TCAGTGGAGAAAAAAGTTTCCATTTTTCTGCAGCGACCGAGAGTATATCATTGGCCGGAG 914
||| |||| |||||||| ||||| ||||| || ||||| || || |||||||| ||||
Sbjct 740 TCATTGGATTAAAAAGTTCCCATTCTTCTGTAGTGACCGGGAATACATCATTGGTAGGAG 799
Query 915 AATATGGGAGTCTGGAAAG-AAGTATTACTG-TGTGACAAAGGGAGTTCCTTATCCAGCT 972
||||||||| ||||| ||| || ||||| || |||||| |||||||| || ||| ||||
Sbjct 800 AATATGGGAATCTGG-AAGAAAATATTA-TGCTGTGACTAAGGGAGTACCGTATAAAGCT 857
Query 973 CTACCAAAGCGTGATAAGCCGAGGCGTGTTGAGCTTTATTTCTCAAGTTGGGTTATCAGA 1032
|| |||||||||||||||||||||| || || |||||||||||||||||| |||||| |
Sbjct 858 TTATCAAAGCGTGATAAGCCGAGGCGAGTCGAACTTTATTTCTCAAGTTGGATTATCA-A 916
Query 1033 -GCAGTTGAATCCCGAAAAGGAGAT-GG--ACTAACAGCTTGTGAAGTATC-CTTAGTCC 1087
||||||||||| ||||||| ||| || | | |||||||||||||| || ||| || |
Sbjct 917 TGCAGTTGAATCAAGAAAAGGTGATGGGCAAATGACAGCTTGTGAAGTCTCTCTT-GTTC 975
Query 1088 ACTACGAAGACATGGGAATCCCAAAAGATGTAGCAAAGTTAGGTGTCCGTCATGGCATGT 1147
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 976 ACTACGAAGACATGGGAATCCCAAAAGATGTAGCAAAGTTAGGAGTCCGTCATGGCATGT 1035
Query 1148 GGGGAGCTGTAAAGAAGCTAAACTCCGGTTTACGAGCATACCAAT-CTGCCAGAAAATCA 1206
||||||||||||||||||||||||| || ||| | || |||||| | || |||||| |
Sbjct 1036 GGGGAGCTGTAAAGAAGCTAAACTCTGGCTTAAGGGCGTACCAAAGC-GCTAGAAAACCT 1094
Query 1207 GACTCATCTCTATCCCGGA-TCGCCCAAATGGCAAGAATCACTACAAAACTGAACATGGA 1265
| | || || || |||| | || || |||||||| ||||| ||||| |||||||||||
Sbjct 1095 GGGACGTCGCTCTCACGGAGT-GCGCAGATGGCAAGTATCACCACAAAGCTGAACATGGA 1153
Query 1266 TTCTGCAG-AATCATCTT---CAAGAG-ATGAAGACAGAAG-CAGAGCAATGGACTATGC 1319
|| || | || ||||| || ||| | ||||| ||| | | ||||| | || ||||
Sbjct 1154 TT-TGGTGGAAACATCTGGGGCA-GAGGACGAAGAGAGAGGAC-GAGCAGTAGAGAATGC 1210
Query 1320 AAGGAGACAACGGGACCATTT-GAGAATGGACTGGAAATGGGTTGTTGTAGGAGGTGTCG 1378
|||| |||| || || || | | | |||||||||||| | ||||||||||| || |
Sbjct 1211 GAGGAAACAAAATGATCAGTTCG-GTGTAGACTGGAAATGGATCGTTGTAGGAGGAGTAG 1269
Query 1379 CATTGGCTTGTGGTCTTCACACTGG-GATCATTGGTAAGGCTTTACTGGCTGGAGCTGGC 1437
| ||||||||||| ||||| || | | | || |||||||| ||| ||| |||||||||
Sbjct 1270 CTTTGGCTTGTGGGCTTCATTCTAGTGCT-ATAGGTAAGGCGTTAATGGTTGGAGCTGGA 1328
Query 1438 CAGAGACTGGCGCGTAGGTGA 1458
|||||||| || |||||||||
Sbjct 1329 CAGAGACTTGCTCGTAGGTGA 1349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84587918325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5