BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493457
Length=1309
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14490.1 | Symbols: | SMAD/FHA domain-containing protein |... 819 0.0
> AT4G14490.1 | Symbols: | SMAD/FHA domain-containing protein
| chr4:8332097-8333578 REVERSE LENGTH=1482
Length=1482
Score = 819 bits (443), Expect = 0.0
Identities = 619/699 (89%), Gaps = 31/699 (4%)
Strand=Plus/Plus
Query 635 AAGAAGATT---GAAAGTGTTGGAAAATCTTGTTTGGGAGTTGTTGATGTAGAGAAGG-A 690
||||||||| |||||||| |||||| ||||||||||||| ||| |||||||||||| |
Sbjct 695 AAGAAGATTGAAGAAAGTGTAGGAAAAGCTTGTTTGGGAGTGGTTAATGTAGAGAAGGTA 754
Query 691 GGAAG-CTTTAAAGGAGAAGAGGACTACAAGGGCTACCAGAAGCAAGAAGATTGATATTG 749
| || |||||||||||||||||| ||| |||||||| ||||||||||||||||||||||
Sbjct 755 -G-AGACTTTAAAGGAGAAGAGGATTACTAGGGCTACAAGAAGCAAGAAGATTGATATTG 812
Query 750 TTGGAGATCCTTATTTGGAATTGGAGATGGTTTTAAACCAAGCTAGAAAGAACAATGGGA 809
|||||||| |||||||||||||||| |||||| |||| | ||| ||||||||||| ||||
Sbjct 813 TTGGAGATTCTTATTTGGAATTGGACATGGTTCTAAATCGAGCCAGAAAGAACAAAGGGA 872
Query 810 AGAACAAGAAAGCAGAGCATAAG-CGATTGAAGAGCTTTGAAGATGATGAGGTTACTGAT 868
||||||||||||| || || ||| || ||||||||||||||| |||||||||||||||||
Sbjct 873 AGAACAAGAAAGCGGATCAGAAGCCG-TTGAAGAGCTTTGAAAATGATGAGGTTACTGAT 931
Query 869 TCTGGAGAGCAGGATTTAAGTTGTCCTGTTGAAGAAGATATGAAGAATGAACTTGATACA 928
|| |||||||||| |||||| |||| |||||||||||||||||| |||||||||||||||
Sbjct 932 TCAGGAGAGCAGGGTTTAAGCTGTCATGTTGAAGAAGATATGAACAATGAACTTGATACA 991
Query 929 GATCTAAGAAAGATGACATTAGGAGCATTGTTCAGTTTTCTGGAGGGTCATCTGTCAAAA 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 GATCTAAGAAAGATGACATTAGGAGCATTGTTCAGTTTTCTGGAGGGTCATCTGTCAAAA 1051
Query 989 GGGATAAATAATGAGACAGAAAGTATGATTGAGCCTATGCGAAGTAAAACTCAGAGAGTT 1048
| ||||| | | ||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1052 GAGATAATTCACAAGACAGAAAATATGATTGAGCCCATGCGAAGTAAAACTCAGAGAGTT 1111
Query 1049 CGTGAG-A-------GA--A--GA---GTTCAAGCTAAAGCGTGTGTGTGTTGAATTGAA 1093
|||||| | || | || ||||| |||||||||||| |||||||||||||
Sbjct 1112 CGTGAGTATATTTCAGATCAAAGAAAAGTTCAGGCTAAAGCGTGTATGTGTTGAATTGAC 1171
Query 1094 AAAGTGTGCAACTGATATGGTGGACACCT-ATGT-TTGGTATAGCTTCACTTCATGAAAT 1151
||||||| |||||||||||||| |||| | || | |||||||||||||| |||||| |||
Sbjct 1172 AAAGTGTCCAACTGATATGGTGCACAC-TGAT-TATTGGTATAGCTTCAGTTCATGGAAT 1229
Query 1152 AAGAAGCACATACTGATAGGTACAAGTTTTCTTATGATGT-GAATCTTAATGCTGTGGGC 1210
||||| |||||||||| |||||||||||| ||||||| || || ||||||||||||||
Sbjct 1230 AAGAAACACATACTGACAGGTACAAGTTT-CTTATGAAGTAGAC-CTTAATGCTGTGGGA 1287
Query 1211 TTGGCTGTGTTACTTAGAGTTTTGACTGCAATGATTTACTTGCGTTTTCTTTGCGTGTGA 1270
||||||||||| |||||||||||||||||| |||||||||||| ||| |||| |||||||
Sbjct 1288 TTGGCTGTGTTGCTTAGAGTTTTGACTGCATTGATTTACTTGCATTTGCTTTACGTGTGA 1347
Query 1271 GACAAAGTAAACATTGAAGTGCTGATGTTTGAGTAGGTT 1309
||||||||||||| |||||||||||||||| ||||||||
Sbjct 1348 GACAAAGTAAACAGTGAAGTGCTGATGTTTAAGTAGGTT 1386
Score = 542 bits (293), Expect = 4e-153
Identities = 376/416 (90%), Gaps = 6/416 (1%)
Strand=Plus/Plus
Query 1 AACAATGGATACGCCATCGTTGAGGCTACTATTCGTCAAGGGTCCAAGAAAAGGCGATGC 60
|||||||| ||||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct 1 AACAATGGTTACGCCATCGTTGAGATTAGTATTCGTCAAGGGTCCAAGAGAAGGCGATGC 60
Query 61 TCTAGAGTACAAACTTGGGTCTACGATTCGTGTTGGTCGAATCGTTCGTGGTAATGAAAT 120
|||||| ||||| | ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTAGATTACAAGCCTGGATCTACGATTCGTGTTGGTCGAATCGTTCGTGGTAATGAAAT 120
Query 121 CGCCATTAAAGACGCTGGAATCTCTACTAAGCATCT-CTGGATCGGATCGGTTTCTGGGA 179
||| |||||||||||||||||||| ||||||||||| | |||||| ||||| ||||||||
Sbjct 121 CGCAATTAAAGACGCTGGAATCTCCACTAAGCATCTTC-GGATCGAATCGGATTCTGGGA 179
Query 180 ATTGGGTGGTTCAAGATCTTGGATCTTCCAACGGCACTTTATTGAACTCGAAGGATCTTG 239
||||||| | ||||||||||||||||||||||| ||||||||||| ||||| | |||||
Sbjct 180 ATTGGGTAATACAAGATCTTGGATCTTCCAACGGTACTTTATTGAATTCGAATGCTCTTG 239
Query 240 ATCCGGAGACGCCGGTGGATCTCGGAGATGGCGATGTTATCGAATTCGGTGAGTATACAT 299
|||| |||||| |||| ||||||||||||||||||||||| || | |||||||||||||
Sbjct 240 ATCCAGAGACGTCGGTAAATCTCGGAGATGGCGATGTTATCAAACTAGGTGAGTATACAT 299
Query 300 CTATTGTGGTGAATTTTGTGATTGATGATGTTTT-GGAGGAGAAGCCTCCGAGGAACAAT 358
||||| ||||||||||||||||||||||| ||| |||| |||||| | |||||||||||
Sbjct 300 CTATTTTGGTGAATTTTGTGATTGATGAT-TTTCAGGAGAAGAAGCTTACGAGGAACAAT 358
Query 359 AGGCGTCAGGCTAATGCGAGAAAGCGAATTAGGGTTTCT-GAAAGTAGCAATTTGG 413
|||||||||||||||||||| |||||||||||||||| | ||||||| ||||||||
Sbjct 359 AGGCGTCAGGCTAATGCGAGGAAGCGAATTAGGGTTT-TAGAAAGTATCAATTTGG 413
Score = 250 bits (135), Expect = 3e-65
Identities = 204/236 (86%), Gaps = 9/236 (4%)
Strand=Plus/Plus
Query 409 TTTGGATGTGAAAATTGCGAGTAAGCCGAGTTCTAGGGTTAGGAAAGTTAGGAAGATCGA 468
||||||||||||| ||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 439 TTTGGATGTGAAATTTGAGAACAAGCCGAGTTCTAGGGTTAGGAAAGTTAGGAAAATCGA 498
Query 469 GGATTCTGAGAAATTAGGGGTTACTGATGGATTAGAAAAGGAACTTCTGGTAGAGAAAAA 528
|||||| |||||||||||| |||||||||||||| || |||| | ||||| ||||||||
Sbjct 499 GGATTCGGAGAAATTAGGGATTACTGATGGATTACAAGAGGA--T-CTGGTGGAGAAAAA 555
Query 529 -GGTAAACTTTAGGAATGTTGAAAGTATCCAGAGTTCATGTGTGAACTCAGTTAAAGT-G 586
|| || ||||||||||||||||||||| |||||||||| ||| |||| | |||| || |
Sbjct 556 TGG-AAGCTTTAGGAATGTTGAAAGTATTCAGAGTTCATCTGTAAACTTAATTAAGGTTG 614
Query 587 AAAATTGAGGATT-TAACAATGGCAGAGGAAAATTCAGGGAGGGGAGTGAAGAAGA 641
||| | ||||||| | |||||| |||||||||| |||||||||| |||||||||
Sbjct 615 AAA-TGGAGGATTGTG-CAATGGTGGAGGAAAATTTAGGGAGGGGATTGAAGAAGA 668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64407299235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5