BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493458
Length=1431
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14480.1 | Symbols: | Protein kinase superfamily protein | ... 2200 0.0
> AT4G14480.1 | Symbols: | Protein kinase superfamily protein
| chr4:8330081-8331544 REVERSE LENGTH=1464
Length=1464
Score = 2200 bits (1191), Expect = 0.0
Identities = 1351/1428 (95%), Gaps = 11/1428 (1%)
Strand=Plus/Plus
Query 1 ATGGCTCGGAACAAGATCGAATTCCCTCTTGATGCTGAGGCCTACGAGATCATCTGCAAG 60
||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGCTCGGAACAAGCTCGAGTTCCCTCTTGATGCTGAAGCCTACGAGATCATCTGCAAG 60
Query 61 ATAGGCGTTGGTGTTAGTGCCTCGGTCTACAAGGCCATATGCATTCCGATGAACTCAATG 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATAGGCGTTGGTGTTAGTGCTTCGGTCTACAAGGCCATATGCATTCCGATGAACTCAATG 120
Query 121 GTAGTTGCTATCAAAGCAATCGATCTTGATCAGTCACGAGCTGATTTTGACAGTCTTCGC 180
||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||
Sbjct 121 GTAGTTGCTATCAAAGCCATCGATCTTGATCAGTCGCGGGCTGACTTTGACAGTCTTCGC 180
Query 181 CGTGAAACCAAGACGATGTCTCTGCTTTCTCACCCGAATATCCTCAATGCTTATTGTTCA 240
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 181 CGTGAAACCAAGACGATGTCTCTGCTTTCTCATCCGAATATTCTCAATGCTTATTGTTCA 240
Query 241 TTCACCGTTGATCGATGTCTTTGGGTGGTTATGCCTTTCATGTCTTGTGGCTCTCTTCAT 300
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 241 TTCACCGTTGATCGATGTCTCTGGGTGGTTATGCCATTCATGTCTTGTGGCTCTCTTCAT 300
Query 301 TCCATTGTCTCTTCTTCTTTCCCCAA-TGGTTTACCGGAAAACTGCATTTCCGTCTTCCT 359
|| || |||||||| ||||| |||| ||| ||||| |||||||||||||||||||||||
Sbjct 301 TCGATCGTCTCTTCGTCTTT-TCCAAGTGGGTTACCAGAAAACTGCATTTCCGTCTTCCT 359
Query 360 CAAGGAAACCCT-AAGTGCAATCTCGTATCTTCACGATCAGGGTCATTTGCACCGGGACA 418
||||||||| || || ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 360 CAAGGAAACTCTGAA-TGCAATCTCGTATCTTCACGATCAGGGTCATTTGCACCGTGACA 418
Query 419 TCAAGGCCGGTAACATTCTAGTAGATTCTGATGGATCCGTGAAGCTCGCTGATTTCGGAG 478
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TCAAGGCAGGTAACATTCTGGTAGATTCTGATGGATCCGTGAAGCTCGCTGATTTCGGAG 478
Query 479 TATCCGCATCGATCTATGAACCTGTGACATCCTCCTCTGGAACAACATCTTCGTCTTTAA 538
|||| ||||| ||||||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 479 TATCTGCATCCATCTATGAACCCGTGACATCTTCCTCTGGAACAACATCTTCTTCTTTAA 538
Query 539 GGTTAACTGATATAGCGGGAACACCCTACTGGATGGCTCCGGAAGTAGTTCACTCTCACA 598
||||||||||||||||||||||||| || ||||||||||||||||| ||||| || ||||
Sbjct 539 GGTTAACTGATATAGCGGGAACACCGTATTGGATGGCTCCGGAAGTGGTTCATTCCCACA 598
Query 599 CAGGATACGGTTTCAAAGCAGACATTTGGTCATTCGGGATAACGGCTTTGGAGTTAGCAC 658
|||| || ||||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct 599 CAGGGTATGGTTTCAAAGCAGACATTTGGTCTTTCGGGATAACAGCGTTGGAGTTAGCAC 658
Query 659 ACGGGAGACCTCCGTTATCTCACTTACCGCCGTTGAAGAGTCTGCTCATGAAGATCACCA 718
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ATGGAAGACCTCCGTTATCTCACTTACCGCCGTTGAAGAGTCTGCTCATGAAGATCACCA 718
Query 719 AAAGGTTTCATTTTGCTGATTACGAGATCAATACAAGTGGAAGCAGCAAAAAGGGTAACA 778
|||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 719 AAAGGTTTCATTTTTCTGATTACGAGATCAATACGAGCGGAAGCAGCAAAAAGGGTAACA 778
Query 779 AGAAGTTCTCAAAAGCTTTTAGAGAAATGGTTGGTTTGTGTCTAGAGCAAGATCCTGCTA 838
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 779 AGAAGTTCTCAAAAGCTTTTAGAGAAATGGTTGGTTTGTGTCTAGAGCAAGATCCTACTA 838
Query 839 AAAGACCATCTGCAGAGAAGTTGTTGAAGCATCCTTTCTTCAAGAATTGTAAAGGACTCG 898
|||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 839 AAAGACCATCGGCAGAGAAGTTGTTGAAGCATCCTTTTTTCAAGAACTGTAAAGGACTCG 898
Query 899 ACTTTGTGGTCAAGAACGTGTTGCATAGCTTGTCAAATGCAGAGCAGATGTTTATGgaga 958
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 899 ACTTTGTGGTCAAGAACGTGTTGCATAGCTTGTCAAACGCAGAGCAGATGTTTATGGAGA 958
Query 959 gtcagattttgatgaagagtgtt-g-ga-gatgatgaagaagacgaagaagaagatgaaa 1015
||||||||||||| ||||||||| | || |||||||||||||| ||||||||||| |||
Sbjct 959 GTCAGATTTTGATCAAGAGTGTTGGAGATGATGATGAAGAAGAAGAAGAAGAAGACGAAG 1018
Query 1016 agatagtgaagaaCAGGAGAATCAGTGGGTGGAATTTCCGTGAAGAGGATCTCCAACTTA 1075
||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1019 AGATAGTGAAGAATAGAAGAATCAGTGGGTGGAATTTCCGTGAAGACGATCTCCAACTTA 1078
Query 1076 GTCCAGTGTTCCCAGCTACTGATTCAGA-TACTTCTGAGTCCAGTCCACGTGAAGAAGAT 1134
|||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||
Sbjct 1079 GTCCAGTGTTCCCAGCTACTGAATCAGACT-CTTCTGAGTCCAGTCCACGTGAAGAAGAT 1137
Query 1135 CACATC-CAAGACAAACAGGAAGACGATAACGTCACAATAACCGGATCTGAACTCGGTTT 1193
|| ||| |||||||| ||||||||||||||||||||||||| || | ||||||||||||
Sbjct 1138 CA-ATCAAAAGACAAAAAGGAAGACGATAACGTCACAATAACGGGGTATGAACTCGGTTT 1196
Query 1194 AGGTTTGTCAAACGAGGAAGCTAAGAACCAAGAAGGTGAGGTTGTAGGGTTTGATAGAGA 1253
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1197 AGGTTTGTCGAACGAGGAAGCTAAGAACCAAGAAGGTGAGGTTGTTGGGTTTGATAAAGA 1256
Query 1254 TTTGGTGTTAGAGAAACTGAAAGTGTTGAAGAAAAGTTTAGAGCATCAAAGAGCGAGAGT 1313
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1257 TTTGGTGTTAGAGAAACTGAAAGTGTTGAAGAAAAGTTTAGAGCATCAAAGAGCAAGAGT 1316
Query 1314 GTCGATTATAATCGAAGCATTGAGTGGGGACaaggaagagaagagcagagaagaagagct 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 GTCGATTATAATCGAAGCATTGAGTGGGGACAAGGAAGAGAAGAGCAGAGAAGAAGAGCT 1376
Query 1374 tctagagatggtggagaagttgaagattgaattggaagCTGAGAAGCT 1421
||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1377 TCTAGAGATGGTGGAGAAGTTAAAGATTGAATTGGAAACTGAGAAGCT 1424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70531765725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5