BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493459
Length=1442
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14465.1 | Symbols: AHL20 | AT-hook motif nuclear-localized ... 1943 0.0
> AT4G14465.1 | Symbols: AHL20 | AT-hook motif nuclear-localized
protein 20 | chr4:8320630-8322201 FORWARD LENGTH=1572
Length=1572
Score = 1943 bits (1052), Expect = 0.0
Identities = 1369/1509 (91%), Gaps = 73/1509 (5%)
Strand=Plus/Plus
Query 2 AAAATTAATTATTGCCCA----CT-T-TCTCTCTCT-GC-GATTGATTCTTGGAAAGAAA 53
|||||||||||||||||| || | ||||||||| | |||||||||||| |||||||
Sbjct 5 AAAATTAATTATTGCCCACTTTCTCTCTCTCTCTCTCTCTGATTGATTCTTGAAAAGAAA 64
Query 54 ATCAAAGTCTCAATAGCTTTGCTTTGATTCTAGTTCCATTCCACAATTGCATCTAATTCT 113
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 65 ATCAAAGTCTCAATAGCTTTGTTTTGATTCTAGTTCCATTCCACAATTGCATCTAATTCT 124
Query 114 CCTACCTTAGCCTTTTCTTCTTTACTTTTATCATCATCAACTCCTAAATTTC--AT---A 168
|||||| ||||||||||||||||| ||| |||||| ||||||||||| ||| || |
Sbjct 125 CCTACCGTAGCCTTTTCTTCTTTA--TTTGTCATCAACAACTCCTAAAATTCATATGAAA 182
Query 169 -T---GAAA-C--TA-G---AG--AA-ATCTTTCAAGAAAGAG---C---TACA-----T 203
| |||| | | | || || || ||||||||||||| | |||| |
Sbjct 183 TTAGAGAAATCGAAACGAAAAGATAATATTTTTCAAGAAAGAGCTACATATACACCTTTT 242
Query 204 -A--TTGTAAAGTTGGAACCCTAGAGGCCTTTCAAGCGAATCATCAGGGTAATAATTTCT 260
| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 243 GACCTTGTAAAGTTGGAACCCTAGAGGCCTTTCAAGCAAATCATCAGGGTAACAATTTCT 302
Query 261 TGATCtttttttttAGTGAATTTTCAGTTTTTGGTCAATCATGGCAAACCCTTGGTGGAC 320
|||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 303 TGATCTTTCTTTTTAGCGAATTTCCAGTTTTTGGTCAATCATGGCAAACCCTTGGTGGAC 362
Query 321 GAACCAGAGTGGTTTAGCCGGCATGGTGGACCATTCGGCCTCCTCAGGCCATCACCAAAA 380
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 363 GAACCAGAGTGGTTTAGCGGGCATGGTGGACCATTCGGTCTCCTCAGGCCATCACCAAAA 422
Query 381 TCATCACCACCAAAGTATTCTTACCAAAGGAGATCTTGGAATAGCCATGAATCAGAGCCA 440
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 CCATCACCACCAAAGTCTTCTTACCAAAGGAGATCTTGGAATAGCCATGAATCAGAGCCA 482
Query 441 AGATAACGACCAAGACGAAGACGACGATCCAAGGGAAGGAGCCGTCGAGGTGGTCAACCG 500
||| ||||||||||||||||| || ||||| || ||||||||||| ||||||||||||||
Sbjct 483 AGACAACGACCAAGACGAAGAAGATGATCCTAGAGAAGGAGCCGTTGAGGTGGTCAACCG 542
Query 501 TAGACCAAGAGGTAGACCACCAGGATCCAAAAACAAACCCAAAGCTCCAATCTTTGTGAC 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 TAGACCAAGAGGTAGACCACCAGGATCCAAAAACAAACCCAAAGCTCCAATCTTTGTGAC 602
Query 561 AAGAGACAGCCCCAACGCACTCCGTAGCCATGTCTTGGAGATCTCCGACGGCAGCGACGT 620
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 603 AAGAGACAGCCCCAACGCACTCCGTAGCCATGTCTTGGAGATCTCCGACGGCAGTGACGT 662
Query 621 CGCCGAGACAATCGCTCACTTCTCTAGACGCAGACAACGCGGCGTTTGCGTTCTTAGCGG 680
|||||| ||||||||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 663 CGCCGACACAATCGCTCACTTCTCAAGACGCAGGCAACGCGGCGTTTGCGTTCTCAGCGG 722
Query 681 AACAGGCTCAGTCGCTAACGTCACCCTCCGTCAAGCCGCGGCACCAGGAGGCGTCGTCTC 740
||||||||||||||||||||||||||||| |||||||| ||||||||||| || |||||
Sbjct 723 GACAGGCTCAGTCGCTAACGTCACCCTCCGCCAAGCCGCCGCACCAGGAGGTGTGGTCTC 782
Query 741 TCTCCAAGGCAGGTTTGAGATCTTATCCTTAACCGGTGCTTTCCTCCCTGGACCTTCCCC 800
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 783 TCTCCAAGGCAGGTTTGAAATCTTATCTTTAACCGGTGCTTTCCTCCCTGGACCTTCCCC 842
Query 801 ACCCGGTTCAACCGGTTTAACGGTTTACTTAGCCGGGGTCCAAGGTCAGGTCGTTGGAGG 860
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 843 ACCCGGGTCAACCGGTTTAACGGTTTACTTAGCCGGGGTCCAGGGTCAGGTCGTTGGAGG 902
Query 861 TAGCGTCGTAGGACCGCTCTTGGCCATAGGGTCGGTCATGGTGATTGCTGCTACTTTCTC 920
|||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 903 TAGCGTTGTAGGCCCACTCTTAGCCATAGGGTCGGTCATGGTGATTGCTGCTACTTTCTC 962
Query 921 TAACGCTACTTATGAGAGATTGCCTATGGAAGAGGAGGAAGACGGTAGCGGCTCAAGACA 980
|||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||
Sbjct 963 TAACGCTACTTATGAGAGATTGCCCATGGAAGAAGAGGAAGACGGTGGCGGCTCAAGACA 1022
Query 981 GATTCACGGAGGCGGTGACTCGCCGCCCGGAATCGGTAGTAGCCTGCCTGATCTATCGGG 1040
||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||| ||
Sbjct 1023 GATTCACGGAGGCGGTGACTCACCGCCCAGAATCGGTAGTAACCTGCCTGATCTATCAGG 1082
Query 1041 GATGGCCGGGCCAGGCTACAATATGCCGCCGCATCTGATTCCAAATGGGGCTGGTCAGTT 1100
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1083 GATGGCCGGGCCAGGCTACAATATGCCGCCGCATCTGATTCCAAATGGGGCTGGTCAGCT 1142
Query 1101 AGGGCACGAACCATATACATGGGTCCACGCGCGACCACCATACTGACTCAGCGAGCCATT 1160
|||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||
Sbjct 1143 AGGGCACGAACCATATACATGGGTCCACGCAAGACCACCTTACTGACTCAGTGAGCCATT 1202
Query 1161 TCTA-A-ATG-T--TCTATATAAATAAATATATAGATGAATATAAGT--G-A-TTTGAGG 1211
|||| | || | |||||||||||||||||||||||||||||||| | | |||||||
Sbjct 1203 TCTATATATAATGGTCTATATAAATAAATATATAGATGAATATAAGCAAGCAATTTGAGG 1262
Query 1212 TAGTCTATTACAAAGCTTT-GCTCTTGTTGGAAAAATAAATAAGTATCAAAGCTTTGCTT 1270
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1263 TAGTCTATTACAAAGCTTTTGCTCTGGTTGGAAAAATAAATAAGTATCAAAGCTTTGTTT 1322
Query 1271 GTTATTAATGGAAA-ATACA-------AA---AGAC-GA-A--AC-T-AAGGGACTTTCG 1313
||| |||||||||| ||| | || ||| || | || | |||||||||||
Sbjct 1323 GTTCTTAATGGAAATATAGAGCTTGGGAAGGTAGAAAGAGACGACATTAAGGGACTTTCA 1382
Query 1314 GATTTTCAGTATCATTACTACTCCACGAAGTTATTGAAATGAATAAACATTGTACTGTAA 1373
|||||||||||| | ||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1383 GATTTTCAGTAT--T-ACTACTCCACGAAATTATTGAAATAAATAAACATTGTACTGTAA 1439
Query 1374 ATTAGAAtgtttgtctttttgtttttgtttagtagtatttgactacaatatttgtatgtg 1433
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1440 ATTAGAATGTTTGTCTTTTTGTTTTTGTGTAGTAGTATTTAACTACAATATTTGTATGTG 1499
Query 1434 ttttccttt 1442
||| |||||
Sbjct 1500 TTTGCCTTT 1508
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71083971720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5