BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493459 Length=1442 Score E Sequences producing significant alignments: (Bits) Value AT4G14465.1 | Symbols: AHL20 | AT-hook motif nuclear-localized ... 1943 0.0 > AT4G14465.1 | Symbols: AHL20 | AT-hook motif nuclear-localized protein 20 | chr4:8320630-8322201 FORWARD LENGTH=1572 Length=1572 Score = 1943 bits (1052), Expect = 0.0 Identities = 1369/1509 (91%), Gaps = 73/1509 (5%) Strand=Plus/Plus Query 2 AAAATTAATTATTGCCCA----CT-T-TCTCTCTCT-GC-GATTGATTCTTGGAAAGAAA 53 |||||||||||||||||| || | ||||||||| | |||||||||||| ||||||| Sbjct 5 AAAATTAATTATTGCCCACTTTCTCTCTCTCTCTCTCTCTGATTGATTCTTGAAAAGAAA 64 Query 54 ATCAAAGTCTCAATAGCTTTGCTTTGATTCTAGTTCCATTCCACAATTGCATCTAATTCT 113 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 65 ATCAAAGTCTCAATAGCTTTGTTTTGATTCTAGTTCCATTCCACAATTGCATCTAATTCT 124 Query 114 CCTACCTTAGCCTTTTCTTCTTTACTTTTATCATCATCAACTCCTAAATTTC--AT---A 168 |||||| ||||||||||||||||| ||| |||||| ||||||||||| ||| || | Sbjct 125 CCTACCGTAGCCTTTTCTTCTTTA--TTTGTCATCAACAACTCCTAAAATTCATATGAAA 182 Query 169 -T---GAAA-C--TA-G---AG--AA-ATCTTTCAAGAAAGAG---C---TACA-----T 203 | |||| | | | || || || ||||||||||||| | |||| | Sbjct 183 TTAGAGAAATCGAAACGAAAAGATAATATTTTTCAAGAAAGAGCTACATATACACCTTTT 242 Query 204 -A--TTGTAAAGTTGGAACCCTAGAGGCCTTTCAAGCGAATCATCAGGGTAATAATTTCT 260 | ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 243 GACCTTGTAAAGTTGGAACCCTAGAGGCCTTTCAAGCAAATCATCAGGGTAACAATTTCT 302 Query 261 TGATCtttttttttAGTGAATTTTCAGTTTTTGGTCAATCATGGCAAACCCTTGGTGGAC 320 |||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||| Sbjct 303 TGATCTTTCTTTTTAGCGAATTTCCAGTTTTTGGTCAATCATGGCAAACCCTTGGTGGAC 362 Query 321 GAACCAGAGTGGTTTAGCCGGCATGGTGGACCATTCGGCCTCCTCAGGCCATCACCAAAA 380 |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| Sbjct 363 GAACCAGAGTGGTTTAGCGGGCATGGTGGACCATTCGGTCTCCTCAGGCCATCACCAAAA 422 Query 381 TCATCACCACCAAAGTATTCTTACCAAAGGAGATCTTGGAATAGCCATGAATCAGAGCCA 440 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 423 CCATCACCACCAAAGTCTTCTTACCAAAGGAGATCTTGGAATAGCCATGAATCAGAGCCA 482 Query 441 AGATAACGACCAAGACGAAGACGACGATCCAAGGGAAGGAGCCGTCGAGGTGGTCAACCG 500 ||| ||||||||||||||||| || ||||| || ||||||||||| |||||||||||||| Sbjct 483 AGACAACGACCAAGACGAAGAAGATGATCCTAGAGAAGGAGCCGTTGAGGTGGTCAACCG 542 Query 501 TAGACCAAGAGGTAGACCACCAGGATCCAAAAACAAACCCAAAGCTCCAATCTTTGTGAC 560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 543 TAGACCAAGAGGTAGACCACCAGGATCCAAAAACAAACCCAAAGCTCCAATCTTTGTGAC 602 Query 561 AAGAGACAGCCCCAACGCACTCCGTAGCCATGTCTTGGAGATCTCCGACGGCAGCGACGT 620 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 603 AAGAGACAGCCCCAACGCACTCCGTAGCCATGTCTTGGAGATCTCCGACGGCAGTGACGT 662 Query 621 CGCCGAGACAATCGCTCACTTCTCTAGACGCAGACAACGCGGCGTTTGCGTTCTTAGCGG 680 |||||| ||||||||||||||||| |||||||| |||||||||||||||||||| ||||| Sbjct 663 CGCCGACACAATCGCTCACTTCTCAAGACGCAGGCAACGCGGCGTTTGCGTTCTCAGCGG 722 Query 681 AACAGGCTCAGTCGCTAACGTCACCCTCCGTCAAGCCGCGGCACCAGGAGGCGTCGTCTC 740 ||||||||||||||||||||||||||||| |||||||| ||||||||||| || ||||| Sbjct 723 GACAGGCTCAGTCGCTAACGTCACCCTCCGCCAAGCCGCCGCACCAGGAGGTGTGGTCTC 782 Query 741 TCTCCAAGGCAGGTTTGAGATCTTATCCTTAACCGGTGCTTTCCTCCCTGGACCTTCCCC 800 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 783 TCTCCAAGGCAGGTTTGAAATCTTATCTTTAACCGGTGCTTTCCTCCCTGGACCTTCCCC 842 Query 801 ACCCGGTTCAACCGGTTTAACGGTTTACTTAGCCGGGGTCCAAGGTCAGGTCGTTGGAGG 860 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 843 ACCCGGGTCAACCGGTTTAACGGTTTACTTAGCCGGGGTCCAGGGTCAGGTCGTTGGAGG 902 Query 861 TAGCGTCGTAGGACCGCTCTTGGCCATAGGGTCGGTCATGGTGATTGCTGCTACTTTCTC 920 |||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 903 TAGCGTTGTAGGCCCACTCTTAGCCATAGGGTCGGTCATGGTGATTGCTGCTACTTTCTC 962 Query 921 TAACGCTACTTATGAGAGATTGCCTATGGAAGAGGAGGAAGACGGTAGCGGCTCAAGACA 980 |||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||| Sbjct 963 TAACGCTACTTATGAGAGATTGCCCATGGAAGAAGAGGAAGACGGTGGCGGCTCAAGACA 1022 Query 981 GATTCACGGAGGCGGTGACTCGCCGCCCGGAATCGGTAGTAGCCTGCCTGATCTATCGGG 1040 ||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||| || Sbjct 1023 GATTCACGGAGGCGGTGACTCACCGCCCAGAATCGGTAGTAACCTGCCTGATCTATCAGG 1082 Query 1041 GATGGCCGGGCCAGGCTACAATATGCCGCCGCATCTGATTCCAAATGGGGCTGGTCAGTT 1100 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1083 GATGGCCGGGCCAGGCTACAATATGCCGCCGCATCTGATTCCAAATGGGGCTGGTCAGCT 1142 Query 1101 AGGGCACGAACCATATACATGGGTCCACGCGCGACCACCATACTGACTCAGCGAGCCATT 1160 |||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||| Sbjct 1143 AGGGCACGAACCATATACATGGGTCCACGCAAGACCACCTTACTGACTCAGTGAGCCATT 1202 Query 1161 TCTA-A-ATG-T--TCTATATAAATAAATATATAGATGAATATAAGT--G-A-TTTGAGG 1211 |||| | || | |||||||||||||||||||||||||||||||| | | ||||||| Sbjct 1203 TCTATATATAATGGTCTATATAAATAAATATATAGATGAATATAAGCAAGCAATTTGAGG 1262 Query 1212 TAGTCTATTACAAAGCTTT-GCTCTTGTTGGAAAAATAAATAAGTATCAAAGCTTTGCTT 1270 ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| || Sbjct 1263 TAGTCTATTACAAAGCTTTTGCTCTGGTTGGAAAAATAAATAAGTATCAAAGCTTTGTTT 1322 Query 1271 GTTATTAATGGAAA-ATACA-------AA---AGAC-GA-A--AC-T-AAGGGACTTTCG 1313 ||| |||||||||| ||| | || ||| || | || | ||||||||||| Sbjct 1323 GTTCTTAATGGAAATATAGAGCTTGGGAAGGTAGAAAGAGACGACATTAAGGGACTTTCA 1382 Query 1314 GATTTTCAGTATCATTACTACTCCACGAAGTTATTGAAATGAATAAACATTGTACTGTAA 1373 |||||||||||| | ||||||||||||| |||||||||| ||||||||||||||||||| Sbjct 1383 GATTTTCAGTAT--T-ACTACTCCACGAAATTATTGAAATAAATAAACATTGTACTGTAA 1439 Query 1374 ATTAGAAtgtttgtctttttgtttttgtttagtagtatttgactacaatatttgtatgtg 1433 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 1440 ATTAGAATGTTTGTCTTTTTGTTTTTGTGTAGTAGTATTTAACTACAATATTTGTATGTG 1499 Query 1434 ttttccttt 1442 ||| ||||| Sbjct 1500 TTTGCCTTT 1508 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71083971720 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5