BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493462
Length=1144
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14410.1 | Symbols: bHLH104 | basic helix-loop-helix (bHLH) ... 1543 0.0
> AT4G14410.1 | Symbols: bHLH104 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:8299759-8301667 FORWARD
LENGTH=1334
Length=1334
Score = 1543 bits (835), Expect = 0.0
Identities = 919/960 (96%), Gaps = 4/960 (0%)
Strand=Plus/Plus
Query 187 AATGGAGCAGAACTTGATGATTACACACAATTTGGTGTAAATTTGCAGCCTGATCAAGAA 246
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 376 AATGGAGCAGAACTTGATGATTACACACAGTTTGGTGTAAATTTGCAGACTGATCAAGAG 435
Query 247 GATACCTTTCCAGATTTTGTGTCATATGGTGTGAATTTGCAGCAGGAACCAGAAGAAGTC 306
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 436 GATACCTTTCCAGATTTTGTGTCATATGGTGTGAATTTGCAGCAGGAGCCAGATGAAGTC 495
Query 307 TTTAGTATTGGAGCTGCTCAATTGGATTTGTCGTCGTATAATGGAGTTTTGTCGCAAGAG 366
||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 496 TTTAGTATTGGAGCTTCTCAATTGGATTTGTCCTCGTATAATGGAGTTTTGTCGCTAGAG 555
Query 367 CCAGAACAAGTAGGGCAGA-AAGATTGTGGAA-TTGTGCAGGAAGATGAAGTAGAGATCA 424
|||||||| || ||||| | |||||||| ||| ||||||||||||| |||||||||||||
Sbjct 556 CCAGAACAGGTGGGGCA-ACAAGATTGT-GAAGTTGTGCAGGAAGAAGAAGTAGAGATCA 613
Query 425 ACTCTGGTCCATCTGGTGGAGCTGTTAAGCAAGAACAGGAACATTTAGATGACGATTGCT 484
| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 614 ATTCTGGTTCATCTGGTGGAGCTGTTAAGGAAGAACAGGAACATTTAGATGACGATTGCT 673
Query 485 CGAGAAAGCGGGCAAGGACTGGATCGTGTAGCAGAGGAGGAGGAACCAAAGCGTGTCGTG 544
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 674 CCAGAAAGCGGGCAAGGACTGGATCGTGTAGCAGAGGAGGAGGAACTAAAGCGTGTCGTG 733
Query 545 AAAGAATGAGGAGGGAGAAGCTAAATGAGAGGTTCATGGATTTGAGCTCGGTTTTGGAGC 604
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 734 AAAGGTTGAGGAGGGAGAAGCTAAATGAGAGGTTTATGGATTTGAGCTCGGTTTTGGAGC 793
Query 605 CTGGGAGGACTCCAAAGACAGATAAACCGGCTATACTCGATGATGCAATCCGTATATTGA 664
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 794 CTGGGAGGACTCCTAAGACTGATAAACCGGCTATACTCGATGATGCAATCCGTATATTGA 853
Query 665 ATCAACTTAGAGATGAAGCTCATAAACTTGAAGAAACTAACCAGAAGCTTTTAGAGGAGA 724
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 854 ATCAACTTAGAGATGAAGCTCTTAAGCTTGAAGAAACTAACCAGAAGCTTTTAGAGGAGA 913
Query 725 TCAAGAGTCTCAAGGCGGAGAAGAACGAGCTGAGGGAGGAAAAGCTGGTGTTGAAGGCGG 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 TCAAGAGTCTCAAGGCGGAGAAGAACGAGCTGAGGGAGGAAAAGCTGGTGTTGAAGGCGG 973
Query 785 ATAAAGAGAAGACGGAACAACAGTTAAAGTCTATGACGGTTCCATCTTCAGGGCTCATGC 844
||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||| |
Sbjct 974 ATAAAGAGAAGACAGAACAACAGTTAAAGTCTATGACGGCTCCATCTTCAGGGTTCATAC 1033
Query 845 CTCAGATTCCAGCCGCATTTAACCACAACAAAATGGCTGTTTACCCGAGTTACGGTTACA 904
|||| |||||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1034 CTCATATTCCAGCTGCATTTAACCACAACAAAATGGCTGTTTATCCAAGTTACGGTTACA 1093
Query 905 TGCCAATGTGGCATTATATGCCTCAATCGGTTCGTGACACATCTCGTGATCAAGAACTCA 964
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1094 TGCCAATGTGGCATTATATGCCTCAATCCGTTCGTGACACATCTCGTGATCAAGAACTCA 1153
Query 965 GGCCTCCTGCTGCTTAAACTCTCAATTGtttttttttGGTACCCATAGGGAACTTATAGA 1024
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1154 GGCCTCCTGCTGCTTAAACTCTCAATTGTTTTTTTTTGGTACCCATAGGGAACTCATAGA 1213
Query 1025 GATATCTGAATCACTTGGTTTAGGATTCTTCCGTTTGGCAAGTGTAAAAGCTTTACTCTT 1084
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 GATTTCTGAATCACTTGGTTTAGGATTCTTCCGTTTGGCAAGTGTAAAAGCTTTACTCTT 1273
Query 1085 GATCTTGGGTTGTATTTTTAATATAAAATAAATATAACTCCAGAAACTTGTGATTTTTCT 1144
||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1274 GATCTTGGGTTGTATTTTTCTTATAAAATAAATATAACTCCAGAAACTTGTGATTCTTCT 1333
Score = 73.1 bits (39), Expect = 5e-12
Identities = 41/42 (98%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 1 CGATGATGATTTCGTCTCTGATTTGTTTTGCTTCGATCAAAG 42
||| ||||||||||||||||||||||||||||||||||||||
Sbjct 333 CGACGATGATTTCGTCTCTGATTTGTTTTGCTTCGATCAAAG 374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56124209310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5