BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493464
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14380.1 | Symbols: | unknown protein; Has 22 Blast hits to... 1103 0.0
> AT4G14380.1 | Symbols: | unknown protein; Has 22 Blast hits
to 22 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa
- 1; Fungi - 1; Plants - 18; Viruses - 0; Other Eukaryotes
- 2 (source: NCBI BLink). | chr4:8285766-8286772 FORWARD LENGTH=1007
Length=1007
Score = 1103 bits (597), Expect = 0.0
Identities = 746/815 (92%), Gaps = 21/815 (3%)
Strand=Plus/Plus
Query 1 aaaaaaaaaaaaaaaGTTAAGTCTCTGAATGGCTTCTTTGCGGCAAAAGAAGAAGCAAAA 60
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 23 AAAAAAAAAAAAAAAG-TAAGTCTCTGAATGGCTTCGTTGCGGCAAAAGAAGAAGCAAAA 81
Query 61 TCCAGCGAAGAGGGCATGGAAAAACTTCACAAACATGGTGAAATCCAAATTCAGAGACAT 120
||| ||||||||||||||||||||||| ||||||||||| || || || |||||||||||
Sbjct 82 TCCTGCGAAGAGGGCATGGAAAAACTTTACAAACATGGTCAAGTCGAAGTTCAGAGACAT 141
Query 121 AGAGATCGCTTCATCGGTCAGAGAATCAACAGCTCGTGTTC-TCAGGTTCATTTCTCGCC 179
||||||||||||||||||||||||||||| ||||||| || || |||||||||||||||
Sbjct 142 GGAGATCGCTTCATCGGTCAGAGAATCAACGGCTCGTG-TCTTCCGGTTCATTTCTCGCC 200
Query 180 GTCTCATCGTTCCTTTTAGAACAAGGTACCTCCAAAACAATAGCTACACGGACAAATACT 239
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 201 GTCTCATCGTTCCTTTTAGAACAAGGTACCTTCAAAACAATAGCTACACGGACAAATACT 260
Query 240 ACTACAGCCGGAACCAAAGTTCTCGGCAGTTTCTCAATTTT-TTCTCTCGATCTCTCACG 298
|||| |||||||||||||||||||| ||||||||||| || || ||||||||||||||
Sbjct 261 ACTATAGCCGGAACCAAAGTTCTCGACAGTTTCTCAACTTCATT-TCTCGATCTCTCACC 319
Query 299 AAACCAAAGCGTCGTCAATATGGATACGATGATGATTGTTACTCTCAAATCTATCAATAC 358
||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||
Sbjct 320 AAACCAAAGCGTCGTCAGTATGGATACGATGATGAAT---ACTCTCAAATCTATCAATAC 376
Query 359 CAAAGCCAATCACGTGGCGAGGGGACGAGTGAGAGCAAAGAAAACGTTGTTAGGCGAA-A 417
|||||||||||||| || |||||||| |||| ||||||||| || ||||| || |||| |
Sbjct 377 CAAAGCCAATCACGCGGTGAGGGGACAAGTGGGAGCAAAGAGAATGTTGTGAGACGAATA 436
Query 418 -A-GAG------GA-GAA-AC-AAGAAGAAGAAGAAGGGATGCCGGAGATTGCTGATTCG 466
| ||| || ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 437 GAAGAGCAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGGGATGCCGGAGATTGCTGATTCG 496
Query 467 ATGGAAGATGCTTGGAGGAGAGTGGTGGCTGCATCGCCGCATTTGCAGGTTAACGAGAGA 526
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 497 ATGGAAGATGCTTGGAGGAGAGTGGTGGCTGCATCGCCTCATCTGCAGGTTAACGAGAGA 556
Query 527 GCCGACGAGTTCATCTACAAGTTTAGAGAAAGTATGAAGATGGAGAAGGAGAGGTCGTTT 586
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 557 GCCGACGAGTTCATCTACAAGTTTAGAGAAAGTATGAAGATGGAGAAAGAGAGGTCGTTT 616
Query 587 CTTGAATTCCAAGAAAGGTTAAAACGAAGTGCTTGATTGACCGATCACTCATGAGTGTGT 646
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 617 CTTGAATTCCAAGAAAGGCTAAAACGAAGTGCTTGATTGATCGATCACTCATGAGTGTGT 676
Query 647 TCCATGttcttcttctgatttctcttgattaaattttctaaagaactttgttttctcatt 706
||||||||||||||||||||||||||| || |||||| |||||||||| |||||||||||
Sbjct 677 TCCATGTTCTTCTTCTGATTTCTCTTGGTTGAATTTTTTAAAGAACTTGGTTTTCTCATT 736
Query 707 ctttcttctttGTTAAAAAATGGGGGTACTTTCAAAAGTGTTAACAAACtttttt-cttc 765
||||||||||||||| ||||| | | | ||||| |||||||||||||||||||| || |
Sbjct 737 CTTTCTTCTTTGTTACAAAATTCGAGAATTTTCAGAAGTGTTAACAAACTTTTTTTCTAC 796
Query 766 attttgtttttCCGATGTAATGTGAATACATATGG 800
||| | |||||| |||||||||||||||||||||
Sbjct 797 ATTATATTTTTCTTATGTAATGTGAATACATATGG 831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42146449333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5