BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493466
Length=1299
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14365.1 | Symbols: XBAT34 | XB3 ortholog 4 in Arabidopsis t... 1655 0.0
AT3G23280.1 | Symbols: XBAT35 | XB3 ortholog 5 in Arabidopsis t... 477 1e-133
> AT4G14365.1 | Symbols: XBAT34 | XB3 ortholog 4 in Arabidopsis
thaliana | chr4:8271464-8273765 REVERSE LENGTH=1407
Length=1407
Score = 1655 bits (896), Expect = 0.0
Identities = 1164/1287 (90%), Gaps = 44/1287 (3%)
Strand=Plus/Plus
Query 1 TATATAATAGATCTTGATTTTCTTCTTCTTCTATCTAAGTTCAATTC-------A----T 49
|||| |||||||||||| ||||||||||| ||||||||||||||||| | |
Sbjct 14 TATAAAATAGATCTTGACTTTCTTCTTCTCCTATCTAAGTTCAATTCATTTGATATTCCT 73
Query 50 T-TAAAAATGGGGCAACAACAATCACAAACCAAGGATGAGATATTGTTTCAAGAAGTGAG 108
| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 74 TCTAAAAATGGGGCAACAACAATCACAGTCCAAGGATGAGATGCTGTTTCAAGAAGTGAG 133
Query 109 TAACAACAACGTCGAAGGTATCAAATCGCTTTGCCGTGAAGGTGCAGGACTCGAGGGGGT 168
||||||||||||||||||||||||||| ||| || |||||| |||||||||||||||||
Sbjct 134 TAACAACAACGTCGAAGGTATCAAATCACTTCACCATGAAGGAGCAGGACTCGAGGGGGT 193
Query 169 GGATAAGTTAGGGAGAACACCATTAATCTTAGCTTGTACAG-ACGATGATCTATATGATG 227
|||||| |||||||||||||||||||||||||||||||| | |||| |||||||||||||
Sbjct 194 GGATAAATTAGGGAGAACACCATTAATCTTAGCTTGTAC-GAACGACGATCTATATGATG 252
Query 228 TAACAAAAACTCTGCTTGAGTTGGGTTCCAATGTCAATGCCTATCGTTCCGGTTGCAATG 287
|| |||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||
Sbjct 253 TAGCAAAAACTCTGCTTGAGTTGGGCTCCAATGTCAATGCTTATCGTTCTGGTTGCAATG 312
Query 288 GTGGGACTCCTCTGCACCATGCTGCAAGAAGAGGTCTCGTACACACGGTTAAGTTACTTC 347
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 313 GTGGGACTCCTCTGCACCATGCTGCAAAAAGAGGTCTCGTACACACGGTTAAGTTACTTC 372
Query 348 TGTCTCACGGTGCAAAACCCCTGATTCTTGATGATGAAATTCAGACGGCTCTCGAGGTTG 407
|||||||||||||||| || || ||||||||||||| || |||| |||||||||||||
Sbjct 373 TGTCTCACGGTGCAAATCCATTGGTTCTTGATGATGATGTTAAGACAGCTCTCGAGGTTG 432
Query 408 CTAGA-ACTGAAGGTTACAGTAATGTTGTACGCGCAATCGAGAGTCATATCTGCTTGTTC 466
||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 433 CTAGAGA-TGAAGGTTACAGTAATGTCGTACGCGCAATCGAGAGTCATATCTGCTTGTTC 491
Query 467 TCTGGTTGTATGCGTGAGTTTTATGGCCCCAGCTTTCTTGAA-TCATTTGCTCCTCGGCT 525
||||||||||||||||||| || |||| ||||||| ||| || | ||||||||||| |||
Sbjct 492 TCTGGTTGTATGCGTGAGTATTCTGGCTCCAGCTTGCTT-AATTTATTTGCTCCTCAGCT 550
Query 526 TCTTTCAAGAAAAGTATGGGTAGTTGTCGTACCAACTGGTTCAAGAAACCCTACAAAGCC 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 TCTTTCAAGAAAAGTATGGGTAGTTGTCGTACCAACTGGTTCAAGAAACCCTACAAAGCC 610
Query 586 TTTAAAGTTGGAGTTGGCTGTGTATGATAGTCTTCAGGATGCACAACCAAGGATGGTGAT 645
||||||||||||||||| | ||||||||||| ||||||||||||||||||| ||||||||
Sbjct 611 TTTAAAGTTGGAGTTGGTTCTGTATGATAGTATTCAGGATGCACAACCAAGAATGGTGAT 670
Query 646 GGATTTGTGGAAAGCTAACTTGGAGGAACCAAAATCATATCAGTCTGATGATTTGGTGAT 705
|||||||||||| ||||| |||||||||||||||| || || |||||||| |||||
Sbjct 671 ACCTTTGTGGAAAGCAAACTTAGAGGAACCAAAATCATTTCGGTGTGATGATTCAGTGAT 730
Query 706 GATTATTGATAACTCCAAAAGTCCAAGGTGCATGAGGCAGAGAAGAGAAAGCGGATTCAT 765
|||||||||| |||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 731 GATTATTGATGACTCCAGAAGTCCAAAGTCCATGAGGCAGAGAAGAGAAAGCGGATTCAT 790
Query 766 TTCTCAAGCGAGGCGTTGGGCTCAAGTCGATAGACAAATACGTCTTAAGCTGGCAGCTGA 825
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 791 TTCTCAGGCGAGGCGTTGGGCTCAAGTCGATAGACAAATACGTCTTAAGCTAGCAGCTGA 850
Query 826 GATCAAAGGTGACATGAAACAGTTAAATTGGTTTTCTGAGGCATGTAAAGGAGTTCCACA 885
||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 851 GATCAAAGGCGACATGAAACAGATGAATTGGTTTTCTGAGGCATGTAAAGGAGTTCCACA 910
Query 886 GCCAATGAATCCTTCAATGTTTATGAAAACATCTCAA--A-CAAC--CAA-------TGT 933
||||||||||||| ||| ||||||||||||||||||| | |||| ||| |||
Sbjct 911 GCCAATGAATCCTCCAAGGTTTATGAAAACATCTCAAGCAACAACAACAACAACCAATGT 970
Query 934 TCCT-CAATTAAGAGATGACGATTTGACACATGTCGACATCTCACTTCCTTCTGCAAAAA 992
|||| || | ||| ||||| | |||||| | ||||| ||| |||||||||||| ||||||
Sbjct 971 TCCTGCACT-AAGTGATGATGCTTTGACTCGTGTCGCCATGTCACTTCCTTCTCCAAAAA 1029
Query 993 TTGAGAATAAAGAAGATGGACTGTGTGTGATTTGTGTGGATGCACCATCTGAAGCAGTGT 1052
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 CTGCGAATAAAGAAGATGGACTGTGTGTGATTTGTGTGGATGCACCATCTGAAGCAGTGT 1089
Query 1053 GTGTGCCGTGTGGACATGTCGCCGGATGCATTTCTTGTTTGAAAGATATTAAAAACAAGA 1112
||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||
Sbjct 1090 GTGTGCCGTGTGGACATGTCGCCGGATGCATTTCTTGCTTGAAAGAGATTGAAAACAAGA 1149
Query 1113 AAATGGGATGTCCGGTTTGTCGCGCCAACATCGATCAGGTCATTAAGCTATACCATGTTT 1172
||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1150 AAATGGGATGTCCTGTTTGTCGCGCCAACATTGATCAGGTCATTAAGCTATATCATGTTT 1209
Query 1173 GAAGGAAAGGATCATATCTCTTCTATGGCTGGAAGA-AGTTGAAACTATCTCCTATTTTT 1231
|||| |||||||| ||||||||||||||| | |||||||||||||||||||||
Sbjct 1210 GAAG--------CATATCTCCTCTATGGCTGGAAGATA-TTGAAACTATCTCCTATTTTT 1260
Query 1232 TG-TT-GTCTTTGAAAGATAACTACAA 1256
| || |||||| ||||||||||||||
Sbjct 1261 TACTTTGTCTTTAAAAGATAACTACAA 1287
> AT3G23280.1 | Symbols: XBAT35 | XB3 ortholog 5 in Arabidopsis
thaliana | chr3:8321350-8324428 FORWARD LENGTH=1946
Length=1946
Score = 477 bits (258), Expect = 1e-133
Identities = 595/754 (79%), Gaps = 37/754 (5%)
Strand=Plus/Plus
Query 161 GAGGGGGTGGATA-AGTTAGGGAGAACACCATTAATCTTAGCTTGTACAG-ACGATGATC 218
||| || |||||| || ||| | ||| || || ||||| ||||||| | || || |
Sbjct 338 GAGTGGATGGATAGAG-AAGGAAAAACTCCGTTGATCTTGGCTTGTA-TGAACTCCGAGC 395
Query 219 TATATGATGTAACAAAAACTCTGCTTGAGTTGGGTTCCAATGTCAATGCCTATCGTTCC- 277
||| |||||| | || ||| || ||||||||||||| ||||| ||||| ||||| |||
Sbjct 396 TATTTGATGTTGCTAAGACTTTGATTGAGTTGGGTTCTAATGTTAATGCTTATCG-TCCT 454
Query 278 GGTTG-CAATGGTGGGACTCCTCTGCACCATGCTGCAAGAAGAGGTCTCGTA-CACACGG 335
||| | | ||| |||||||||||||||||||||||||| ||||||||| | | |||| |
Sbjct 455 GGTCGTC-ATGCTGGGACTCCTCTGCACCATGCTGCAAAAAGAGGTCTTG-AGAACACTG 512
Query 336 TTAAGTTACTTCTGTCTCACGGTGCAAAACC-CCTGATTCTTGATGATGAAAT-TCAGAC 393
||||||||||||| ||||||||||| || || | || ||||| |||||| | | ||||||
Sbjct 513 TTAAGTTACTTCTTTCTCACGGTGCGAATCCACTTG-TTCTTAATGATG-ATTGTCAGAC 570
Query 394 GGCTCTCGAGGTTGCTAGAACT-GAA-GGTTACAGTAATGTTGTACGCGCAATCGAGAGT 451
| || ||||| ||||| | | || |||| || ||||||||||| ||||| ||||
Sbjct 571 ACCACTTGAGGTCGCTAG-AGTCAAAGGGTT-TAGCAATGTTGTACGTGCAATTGAGAAA 628
Query 452 CATATCTGCTTGTTCTCTGGTTGTATGCGTGAGTTTTATGGCCCCAGCTTTCTTGAATCA 511
|| |||||||||||||| ||||| |||||||| ||||| ||||| | |||||| || | |
Sbjct 629 CACATCTGCTTGTTCTCGGGTTGGATGCGTGAATTTTACGGCCCTACCTTTCTCGACTTA 688
Query 512 TTTGCTCCTCGGCTTCTTTCAAGAAAAGTATGGGTAGTTGTCGTACCAACTGGTTCAAGA 571
|||||||| | |||||||||||||| |||||||||||| | ||||| ||||||||||||
Sbjct 689 TTTGCTCCGCAGCTTCTTTCAAGAAGAGTATGGGTAGTCATTGTACCTACTGGTTCAAGA 748
Query 572 AACCCTACAAAGCCTTTAAAGTTGGAGTTGGCTGTGTATGATAGTCTTCAGGATGCACAA 631
||||||||||||||||| ||||||||| ||| |||||||| |||||| || ||||||||
Sbjct 749 AACCCTACAAAGCCTTTCAAGTTGGAGCTGGTTGTGTATGCTAGTCTGCAAGATGCACAG 808
Query 632 CCAAGGATGGTGATGGATTTGTGGAAAGCTAACTTGGAGGAACCAAAATC-ATATCAGTC 690
||| | | |||||| |||||||||||| |||||||| ||||||||| | | | |||||
Sbjct 809 CCACGCACAGTGATGCCTTTGTGGAAAGCAAACTTGGAAGAACCAAAAGCGA-AGCAGTC 867
Query 691 TGATGATTTG-GTGATGATTATTGATAACTCCAAAAGTCC-AAGGTGCATGAGGCAGAGA 748
||| | || |||||||| |||||||||||| || ||| ||| ||| || | ||| |
Sbjct 868 CGAT-ACTTCAGTGATGATCGTTGATAACTCCACAA-TCCCAAGCCGCAGGATGAAGA-A 924
Query 749 AGAGAAAGCGGAT-T-CATTTCTCAAGCGAGGCGTTGGGCTCAAGTCGATAGACAAATAC 806
| ||| | || | | | || || | ||| ||| || ||||||| | ||| |||| ||
Sbjct 925 AC-GAA-G-GG-TCTGCGCCTCCCACGGGAGACGTAGGCCTCAAGTAGTTAGGCAAACAC 980
Query 807 GTCTTAAGCTGGCAGCTGAGA-TCAAAGGTGACATGA-AACAGTTAAATTGGTTTTCTGA 864
||||||| | ||| || || | || ||||||| | ||||| |||| ||||||| |||
Sbjct 981 GTCTTAAATTCGCACCTTCGACTGAA-GGTGACA-GCCAACAGCTAAAGTGGTTTTGTGA 1038
Query 865 GGCATGTAAAGG-AGTTCCACAGCCAATGAATCC 897
||||||||||| | |||||||||| ||| ||||
Sbjct 1039 TGCATGTAAAGGGA-TTCCACAGCCGATGCATCC 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63905293785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5