BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493471
Length=503
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14342.1 | Symbols: | Splicing factor 3B subunit 5/RDS3 com... 652 0.0
AT3G23325.1 | Symbols: | Splicing factor 3B subunit 5/RDS3 com... 374 6e-103
> AT4G14342.1 | Symbols: | Splicing factor 3B subunit 5/RDS3 complex
subunit 10 | chr4:8253550-8255508 REVERSE LENGTH=606
Length=606
Score = 652 bits (353), Expect = 0.0
Identities = 414/442 (94%), Gaps = 9/442 (2%)
Strand=Plus/Plus
Query 26 tcttcttctctctttctttctttcttcttcttGCTGCG-AACTCTGAAAAAGATGCAGGC 84
||||||||| || ||| ||| ||||||| |||||||| |||||||||||||||||||||
Sbjct 56 TCTTCTTCT-TC-TTC-TTC-TTCTTCTAGTTGCTGCGAAACTCTGAAAAAGATGCAGGC 111
Query 85 AAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAATATGTTGGTAC 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 112 AAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAATATGTTGGAAC 171
Query 145 AGGGCATGCTGATTTGAGTAGATTTGAGTGGGCTATGAACATTCAGCGTGATAGTTATGC 204
|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 172 CGGTCATGCTGATTTGAGTAGATTTGAGTGGGCTGTGAACATTCAGCGTGATAGTTATGC 231
Query 205 TTCATACATTGGTCACTACCCTATGCTTTCATACTTTGCAATTGCGGAGAACGAGTCTAT 264
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 232 TTCATACATTGGTCACTACCCTATGCTTTCATACTTTGCTATTGCTGAGAACGAGTCTAT 291
Query 265 CGGACGCGAACGCTACAATTTCATGCAGAAAATGCTATTACCCTGCGGCCTTCCTCCGGA 324
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 TGGACGAGAACGCTACAATTTCATGCAGAAAATGCTATTACCCTGCGGCCTTCCTCCGGA 351
Query 325 AAGAGAAGACGAATAGAAGACATGAGGATTCGATTTGTCTTTCTACTTATCAAGAACTCG 384
||||||||| |||||| ||||||||||||||||||||||||| | ||||||||||||||
Sbjct 352 AAGAGAAGAGGAATAGGTGACATGAGGATTCGATTTGTCTTTCAAGTTATCAAGAACTCG 411
Query 385 TATGATGGAATGTTGGTTTGGAGTTTTAAA--CTGTC-AGATTTGATGTTTTGGTAGAGA 441
| |||||||||||||||||||||||||||| ||||| | ||||||| || |||||||||
Sbjct 412 TGTGATGGAATGTTGGTTTGGAGTTTTAAAAACTGTCCA-ATTTGATCTTCTGGTAGAGA 470
Query 442 TTTATATGACTGTTAAAACACA 463
|||||||||||||||||| |||
Sbjct 471 TTTATATGACTGTTAAAAAACA 492
> AT3G23325.1 | Symbols: | Splicing factor 3B subunit 5/RDS3 complex
subunit 10 | chr3:8345771-8347062 FORWARD LENGTH=507
Length=507
Score = 374 bits (202), Expect = 6e-103
Identities = 266/296 (90%), Gaps = 8/296 (3%)
Strand=Plus/Plus
Query 47 ttcttcttctt--G--CT-GC-GAACTCTGAAAAAGATGCAGGCAAGTGATAGGTTTAAC 100
||||||||||| | || || ||| |||| ||||||||||||||||||||||||||||
Sbjct 4 TTCTTCTTCTTGCGAACTCGCTGAAGTCTG--AAAGATGCAGGCAAGTGATAGGTTTAAC 61
Query 101 ATCAATTCTCAGCTTGAGCATCTTCAAGCTAAATATGTTGGTACAGGGCATGCTGATTTG 160
|| ||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 62 ATAAATTCTCAGCTTGAGCATCTTCAAGCTAAGTATGTTGGTACAGGTCATGCAGATTTG 121
Query 161 AGTAGATTTGAGTGGGCTATGAACATTCAGCGTGATAGTTATGCTTCATACATTGGTCAC 220
|| |||||||| ||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 122 AGCAGATTTGAATGGACTGTGAACATTCAGCGTGATAGTTATGCTTCATACATTGGTCAC 181
Query 221 TACCCTATGCTTTCATACTTTGCAATTGCGGAGAACGAGTCTATCGGACGCGAACGCTAC 280
||||| |||||||| ||||||||||| || |||||||| ||||| || || ||||| |||
Sbjct 182 TACCCGATGCTTTCTTACTTTGCAATAGCTGAGAACGAATCTATTGGTCGAGAACGTTAC 241
Query 281 AATTTCATGCAGAAAATGCTATTACCCTGCGGCCTTCCTCCGGAAAGAGAAGACGA 336
|| ||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 242 AACTTCATGCAGAAAATGCTCTTACCTTGCGGCCTTCCTCCAGAAAGAGAAGACGA 297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24011922266
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5