BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493473
Length=2699
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14330.1 | Symbols: | P-loop containing nucleoside triphosp... 4159 0.0
> AT4G14330.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:8244194-8247444
FORWARD LENGTH=2802
Length=2802
Score = 4159 bits (2252), Expect = 0.0
Identities = 2539/2678 (95%), Gaps = 18/2678 (1%)
Strand=Plus/Plus
Query 1 ATTTCAATTTCACTCTTTCGAAAGCTTGAAACTTTTTCAACAATGGCACCGACACCATCA 60
||||||||||||||||||||||| ||| | ||||||||||||||||||||||||
Sbjct 1 ATTTCAATTTCACTCTTTCGAAA-CTT----C---TTCAACAATGGCACCGACACCATCT 52
Query 61 TCTTCAAGATCAAATCAAACCCAATACACCTTAATCAGAACTCCACAAACCAAACAACGT 120
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 53 TCTTCAAGATCAAATCAAACTCAATACACCTTAATCAGAACTCCACAAACAAAACAACGT 112
Query 121 CTCAATTTCCACTCGAAAACCCCAAACCCAGAAGGATCTAAAGATCCAACACCACCGGAG 180
|||||||||||||| ||||||||||||||||| ||||||||||||||| | |||||||||
Sbjct 113 CTCAATTTCCACTCAAAAACCCCAAACCCAGACGGATCTAAAGATCCATCTCCACCGGAG 172
Query 181 CATCCAGTTGAAGTAATCGGCCGGATCCGAGATTACCCAGATCGAAAAGAGAAAACTTCT 240
|||||||||||||||||||||||||||||||||||||| || || ||||||||| | ||
Sbjct 173 CATCCAGTTGAAGTAATCGGCCGGATCCGAGATTACCCTGACCGGAAAGAGAAATCACCT 232
Query 241 TCGATCTTGCAAGTTAACACAGATAATCAAACGGTACGAGTCAGAGCTGATATTGGGTAC 300
|||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 233 TCGATCTTACAAGTCAACACAGATAATCAAACGGTACGAGTCAGAGCTGATGTTGGGTAC 292
Query 301 AGAGATTTCACTCTTGACGGTGTTTCTTTCTCGGAGCAAGAAGGTCTTGAAGAGTTTTAC 360
||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 293 AGAGACTTCACACTCGACGGTGTTTCTTTCTCGGAGCAAGAAGGTCTTGAAGAGTTCTAC 352
Query 361 AAGAAGTTTATAGAAGAGAGGATTAAAGGTGTCAAAGTTGGGAATAAATGCACGATTATG 420
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 353 AAGAAGTTTATAGAAGAGAGGATTAAAGGAGTGAAAGTTGGGAATAAATGCACGATTATG 412
Query 421 ATGTATGGACCTACTGGTGCTGGAAAGAGTCATACTATGTTTGGTTGTGGCAAGGAGCCC 480
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 413 ATGTATGGACCTACTGGTGCTGGAAAGAGTCATACTATGTTTGGTTGTGGGAAAGAGCCT 472
Query 481 GGGATTGTGTATCGGTCTTTGCGGGATATTTTGGGTGATTCGGATCAAGATGGTGTTACT 540
|||||||||||||| |||||| | ||||| ||||| ||||| ||||||||||||||||||
Sbjct 473 GGGATTGTGTATCGTTCTTTGAGAGATATATTGGGAGATTCTGATCAAGATGGTGTTACT 532
Query 541 TTTGTTCAAGTTACTGTT-TTGGAGGTTTATAATGAGGAGATTTATGATCTTCTTTCGAC 599
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 533 TTTGTTCAAGTTACTGTTCTT-GAGGTTTATAATGAGGAGATTTATGATCTTCTTTCGAC 591
Query 600 TAATAGTAGTAACAATTTAGGGATTGGTTGGCCTAAAGGAGGAAGCACTAAGGTGAGGCT 659
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 592 TAATAGTAGTAACAATTTAGGTATTGGTTGGCCTAAAGGAGCAAGCACTAAGGTGAGGCT 651
Query 660 TGAAGTAATGGGCAAAAAGGCGAAAAACGCGACCTTTATTTCAGGGACAGAGGCTGGAAA 719
|||||||||||| ||||||||||||||||| | |||||||| |||||||||||||| ||
Sbjct 652 TGAAGTAATGGGGAAAAAGGCGAAAAACGCAAGTTTTATTTCTGGGACAGAGGCTGGGAA 711
Query 720 GATCTCTAAAGAAATTGTCAAAGTGGAGAAACGGAGAATTGTGAAGAGTACACTTTGCAA 779
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 712 GATTTCTAAAGAAATTGTCAAAGTGGAGAAACGGAGAATTGTGAAGAGTACACTTTGTAA 771
Query 780 TGAAAGAAGTTCCCGGAGTCACTGCATTATCATACTTGATGTGCCAACTGTTGGTGGAAG 839
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 772 CGAAAGAAGTTCTCGGAGTCACTGCATTATCATACTTGATGTGCCAACTGTTGGGGGAAG 831
Query 840 ATTGATGCTTGTTGACATGGCTGGTTCTGAAAATATAGACCAAGCTGGGCAGACTGGATT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 ATTGATGCTTGTTGACATGGCTGGTTCTGAAAATATAGACCAAGCTGGGCAGACTGGATT 891
Query 900 TGAAGCTAAGATGCAAACAGCTAAGATCAACCAGGGAAATATAGCACTGAAGCGAGTTGT 959
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 892 TGAAGCTAAGATGCAAACTGCTAAGATCAACCAGGGAAATATTGCACTGAAGCGAGTTGT 951
Query 960 GGAATCTATAGCAAATGGAGATTCTCACGTACCCTTTAGAGACAGCAAGCTGACGATGCT 1019
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 952 GGAATCTATAGCAAATGGAGATTCTCATGTACCCTTTAGAGACAGCAAGCTGACCATGCT 1011
Query 1020 TCTTCAGGACTCTTTTGAAGATGACAAGTCAAAGATTCTAATGATCCTGTGTGCAAGCCC 1079
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1012 TCTCCAGGACTCTTTTGAAGATGACAAGTCAAAGATTCTAATGATCCTGTGTGCGAGCCC 1071
Query 1080 GGATCCAAAGGAAATGCACAAGACTCTCTGTACTCTAGAGTATGGGGCAAAAGCAAAGTG 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 GGATCCAAAGGAAATGCACAAGACTCTCTGTACTCTAGAGTATGGGGCAAAAGCAAAGTG 1131
Query 1140 TATAGTTCGTGGGTCTCATACTCCAAACAAAGATAAGTATGGGGGTGATGAGTCTGCCTC 1199
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1132 CATAGTTCGTGGGTCTCATACTCCAAACAAAGATAAGTATGGGGGTGATGAGTCTGCTTC 1191
Query 1200 TGCTGTGATTTTGGGATCAAGAATAGCTGCCATGGATGAGTTTATTCTCAAACTCCAGTC 1259
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1192 TGCTGTGATTTTGGGATCAAGAATAGCTGCCATGGATGAGTTCATTATCAAACTCCAGTC 1251
Query 1260 CGagaagaagcaacaagaaaaagaaaggaacgaggcacaaaagctgctgaagaagaagga 1319
|||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1252 TGAGAAGAAGCAAAAAGAAAAAGAAAGGAATGAGGCACAAAAGCAGCTGAAGAAGAAGGA 1311
Query 1320 agaggaagTTGCTGCTTTAAGATCTCTTTTAACACAGAGGGAAGCATGTGCTACCAATGA 1379
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1312 AGAGGAAGTTGCTGCTTTAAGATCTCTTTTAACACAGAGGGAAGCTTGTGCTACCAATGA 1371
Query 1380 AGAGGAGATAAAAGAGAAAGTAAACGAGAGAACCCAGCTTTTGAAATCGGAGCTAGAGAA 1439
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 1372 AGAGGAGATAAAAGAGAAAGTAAACGAGAGAACCCAGCTTTTGAAGTCGGAACTAGATAA 1431
Query 1440 GAAACTTGAAGAATGCCGAAGAATGGCTGAGGAATTTGTTGAGATGGAGAGAAGGAGAAT 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 GAAACTTGAAGAATGCCGAAGAATGGCTGAGGAATTTGTTGAGATGGAGAGAAGGAGAAT 1491
Query 1500 GGAGGAAAGGATTGTGCAGCAGCAAGAGGAACTGGAGATGATGAGGAGACGGTTGGAGGA 1559
|||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1492 GGAGGAAAGGATAGTTCAGCAGCAAGAGGAACTGGAGATGATGAGGAGACGGTTAGAGGA 1551
Query 1560 AATTGAGATTGAGTTTCGGCGCTCAAGGGATGGAGGCAGTATTGATGAAACTAGTGGGTT 1619
||| ||| ||||||| || ||||||| ||||||| ||| |||||||||||||||||||
Sbjct 1552 AATCGAGGTTGAGTTCCGCCGCTCAA---ATGGAGGAAGTGTTGATGAAACTAGTGGGTT 1608
Query 1620 TGCCAAAAGACTTAGAAGTCTTTACTCTGATGATGATCCTGGTATGGTGAAGTCAATGGA 1679
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1609 TGCCAAAAGACTCAGGAGTCTTTACTCTGATGATGATCCTGGTATGGTGAAGTCAATGGA 1668
Query 1680 CCTTGACATGGGTGATCCAGAACCAGTCAAGCAAGTATGGGGAGCTGTTTCACACCAATC 1739
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1669 CCTTGACATGGGTGATCCAGAACCTGTCAAGCAAGTGTGGGGAGCTGTTTCACACCAATC 1728
Query 1740 AAGCAACACAATTAGCAGCAATTTCACTAACATTTTGCAACCAAAGCCTTCAGAGAATAT 1799
||||||||| ||||| ||||| ||||||||| |||||||||| |||||||||||||||||
Sbjct 1729 AAGCAACACTATTAGTAGCAACTTCACTAACCTTTTGCAACCGAAGCCTTCAGAGAATAT 1788
Query 1800 GCTTACACAGATGTATCCTGACCGGGTATGCTTGAGCACTGTCTTTGAAGAAGAAGAGGT 1859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1789 GCTTACACAGATGTATCCTGACCGGGTATGCTTGAGCACTGTCTTTGAAGAAGAAGAAGT 1848
Query 1860 TGAAGAAGAGGAAGAAAAAGTGATAGTCGAGGATAAAAGCATCTGCTTGATAACAACACC 1919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1849 TGAAGAAGAGGAAGAAAAAGTGATAGTCGAGGATAAAAGCATCTGCTTGATAACAACACC 1908
Query 1920 AATGCCTAGTTTGAACTCTGAAGGTTTGGGTAAAGAGAACTGTTTCAACGGTGCAGATGA 1979
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1909 AATGCCTAGTTTGAACTCTGAAGGTTTGGGTAAAGAGAACTGCTTCAACGGTGCAGATGA 1968
Query 1980 CAAGGAATCAGCCTCGTCTAGAAGGTTGAGAATTCAAAACATTTTCACCCTTTGTGGCAA 2039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1969 CAAGGAATCAGCCTCGTCTAGAAGGTTGAGAATTCAAAACATTTTCACCCTTTGTGGCAA 2028
Query 2040 TCAGAGAGAGCTGTCTCAACACAGTGGGCAAGAGGAGGACCAAGCCAATACTGCATCACC 2099
||||||||||||||||||||||||||| || |||||||| |||||||||| |||||||||
Sbjct 2029 TCAGAGAGAGCTGTCTCAACACAGTGGACAGGAGGAGGATCAAGCCAATATTGCATCACC 2088
Query 2100 TGTTAAGAAAGACAATCAGCTGTTTTCTATAACGAATAAGGCCGAAGCACTAGCAGTGGA 2159
|| |||||||||||||||| | |||||||| |||||||||||||||||||||||||| ||
Sbjct 2089 TGATAAGAAAGACAATCAGTTCTTTTCTATTACGAATAAGGCCGAAGCACTAGCAGTAGA 2148
Query 2160 AGGAGCAAAGGAAAACAATATCTCAGTCGATGAAAGGAAAAACGTTCAGATAGATATCTA 2219
|| |||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||||
Sbjct 2149 AGAAGCAAAGGAAAACAATATCTCAGTCGATCAAAGGGAAAACGGTCAGCTAGATATCTA 2208
Query 2220 TGTTAAATGGGAAACAACAGCTGATAACCCTCGAAAGCTCATAACAACACTGAGGGTTAC 2279
|||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||
Sbjct 2209 TGTTAAATGGGAAACAGCTGCTGATAACCCTCGAAAGCTCATAACAACACTGAGAGTTAC 2268
Query 2280 AAAGGACGCAACACTAGCTGACTTGAGGAAGCTTATTGAGATCTACCTTGGATCTGATAA 2339
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2269 AAAGGATGCAACACTAGCTGACTTGAGGAAGCTTATTGAGATCTACCTTGGATCTGATAA 2328
Query 2340 TCAGGCTTTTACCTTTCTCAAGCTCGGGGAACCATGTGGAGCTCAAGTGGCAAAGGAGAA 2399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2329 TCAGGCTTTTACCTTTCTCAAGCTCGGGGAACCATGTGGAGCTCAAGTGGCAAAGGAGAA 2388
Query 2400 AGAATCAACAGTTCAAGCGACGAGCCTACCTTTCTGCAACGGACACGCTTACCTCGCCAC 2459
|||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||
Sbjct 2389 AGAATCAACAGTTCAAGCTACGAGCCTACCTCTCTGCAACGGACACGCATACCTCGCCAC 2448
Query 2460 TTTGAGACCGGGAAAGAGCTCACAACTTCAAAGTCTTCCACCGGCAAGTCCACTTCCTCT 2519
||||||||| |||||||||||||||| | ||||||||| ||| ||||| |||||||| ||
Sbjct 2449 TTTGAGACCAGGAAAGAGCTCACAACATAAAAGTCTTCAACCTGCAAGCCCACTTCCACT 2508
Query 2520 -AACTCCCATTGAAAACAAGATGC---TTAGCCCCATCTCAAAAGTGACACCGAACCACC 2575
|| |||||| ||||||| |||| ||| ||||||||||||||||||||||||||| |
Sbjct 2509 TAA-TCCCATAGAAAACATGATGGAAGTTACCCCCATCTCAAAAGTGACACCGAACCATC 2567
Query 2576 AAGTTGATGAATTTTCATCACCCATTCTCGCAGCTCATCTCAGCTCCACTCCATTCATCA 2635
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 2568 AAGTTGATGAATTTTCATCACCCAATCTCGTAGCTCATCTCAGCTCCACTCCATTCATCA 2627
Query 2636 CTCTGAGAAGACATTAGTCACTATGTCTTCTTTTGTCT 2673
|||| |||||||||||||| ||||||||| |||| |||
Sbjct 2628 CTCTCAGAAGACATTAGTCGCTATGTCTTGTTTTCTCT 2665
Score = 67.6 bits (36), Expect = 6e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 2661 TCTTCTTTTGTCTGTCCAAAGGTAGCTTTTGAAATATGT 2699
|||||||||||||||||||||||||||||||||| ||||
Sbjct 2668 TCTTCTTTTGTCTGTCCAAAGGTAGCTTTTGAAAGATGT 2706
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 134046071696
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5