BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493476
Length=2898
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14310.2 | Symbols: | Transducin/WD40 repeat-like superfami... 2324 0.0
> AT4G14310.2 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr4:8236759-8240324 REVERSE LENGTH=3058
Length=3058
Score = 2324 bits (1258), Expect = 0.0
Identities = 1443/1532 (94%), Gaps = 13/1532 (1%)
Strand=Plus/Plus
Query 1 ATGTCAGCTTCAACGAATCGCCGCCGGCTAAAAGATATAAACACCGGCGCCGGAGGAAAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1 ATGTCAGCTTCAACGAATCGCCGCCGGCTAAAAGATATAAACACCGGCGCCGGTGAAAAT 60
Query 61 CTATCTTCTGGTAAAAAACCATCAAGGTCTGTGACTCCACTTCCGATCTCAAGCAAAAAT 120
| ||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 61 CCATCATCTGGTAAAAAACCATTGAGGTCTGTAACTCCACTTCCGATCTCAAGCAAAAAT 120
Query 121 CCAAGTCCCGCTCTTCAGAAATCATTATCCAGCAAAGAGAATCCAAATCCGAAGCTTAGT 180
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 TCAAATCCCGCTCTTCAGAAATCATTATCCAGCAAAGAGAATCCGAATCCGAAGCTTAGT 180
Query 181 CACCGGTCATTTGGATCGACACAGAAGCCAGTGCTTCGTCCTGTTCCGCGAATCGATAAG 240
||||| |||||||||||||| |||||||||||||| || ||||| ||||| || ||||||
Sbjct 181 CACCGCTCATTTGGATCGACTCAGAAGCCAGTGCTCCGGCCTGTACCGCGCATTGATAAG 240
Query 241 TCCGCCGTGAGAGGCGAGGGTCGAGTTACGCGATCCACGTCTTCTGGTTTGCGAGGTAGG 300
||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 241 TCCGCCGTGAGTGGCGAGGGTCGGGTTACGCGATCCACGTCATCTGGTTTGCGAGGTAGG 300
Query 301 AGTTCTAGTCCATCTGATTTGATTAGGGTTTTCTCGGATTTGAGAAAGAGAAATGAATCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGTTCTAGTCCATCTGATTTGATTAGGGTTTTCTCGGATTTGAGAAAGAGAAATGAATCT 360
Query 361 AGGGTTATTGGGGAAAAGGGTGAATTGGATCAGGATAAGAAATCTGGGTTCAAGAGTTCT 420
||||||||||||||||||||||||| || |||||||||||| |||||| |||||||||||
Sbjct 361 AGGGTTATTGGGGAAAAGGGTGAATCGGGTCAGGATAAGAAGTCTGGGCTCAAGAGTTCT 420
Query 421 GGATTCAAACAGGTTACGAGTGAAATTAAGGTTGAGACAAGTAGGGTTTGTGAGAAAACA 480
||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||| ||
Sbjct 421 GGATTCAAACAGGGTACGAGTGAAATTAAGGTTGAGCCAAGTAGTGTTTGTGAGAAAGCA 480
Query 481 GATGAAGAAAGTA-TTGTTCCAGTGAAATCAAGCAAATTTGAAGGTTCTAGCGTGGCCAG 539
||||||| ||||| |||| |||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 481 GATGAAGGAAGTAGTTGT-CCAGTGAATTCAAGCAAATTTGAAGGTTCTAGTGTGGCGAG 539
Query 540 AAATTCAATTTCTGATCCAAAGGAACATGCTTTGGTTGGTTCTGGAGAGAAATCTGCTGT 599
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||
Sbjct 540 AAATTCAATTTCTGATCCAAAGGCACATGCTTTAGTTGGTTCTGGAGAGAAATCTACTGT 599
Query 600 TGTTTTGAAATCTGATTGTAAAATTGAAAAGATTGGGAAAGGTACTAGTGTAGGTTTAAG 659
|| ||||||||||||| |||| |||||||||| ||||||||| |||||||||| ||||||
Sbjct 600 TGCTTTGAAATCTGATAGTAAGATTGAAAAGACTGGGAAAGGGACTAGTGTAGCTTTAAG 659
Query 660 AAGGAAGTCTTTGGATAATGTTGGGAAGGCAATGGAGATGTCAAAGGAGATTAGAGGGAA 719
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 660 AAGGAAGTCTTTGGATAATGTTGGGAAGGCAATGGAGATGTCAAAGGATATAAGAGGAAA 719
Query 720 TGAAGGAAGCAGCAATAGCACTGCTAAGTATCCGAGCAAGCTGCATGAGAAGCTTGCTTT 779
|||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 720 TGAAGGAAGCAGCAATAGTACTGCTAAGTATCCAAGCAAGCTGCACGAGAAGCTTGCTTT 779
Query 780 TCTTGAAGGAAAGGTTAAGAAAATTGCGTCAGATATCAAGAAGACAAAGGACATGCTGGA 839
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 780 TCTTGAAGGAAAGGTTAAGAAAATTGCATCAGATATCAAGAAGACAAAGGATATGCTGGA 839
Query 840 TTTGAACAATCCGGATTCATCTAAGGTTATAATCTCTGATATACAGCAGAAGATCACAGG 899
|||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 840 TTTGAACAATCCGGATTCGTCTAAGGTTATAATCTCTGATATACATCAGAAAATCACAGG 899
Query 900 GATTGAAAAGTCTATGAGTCATGTTATTGATGGTCCAGAGAAAAACAAAGCTACTCAAGT 959
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 900 GATTGAAAAGTCTATGAGTCATGTTATTGATGGTCCAGAGAAAAACAAA---ACT-A--- 952
Query 960 GACGAAAGCAAAAACTTCGGTTAAAGGATTAAATAAGGAAGAGTTGGAAGACAGACTCTT 1019
|||||||||||| ||| || ||||||||||||||||||||| ||||||||||||||||
Sbjct 953 --CGAAAGCAAAAAGTTCTGTGAAAGGATTAAATAAGGAAGAGCTGGAAGACAGACTCTT 1010
Query 1020 TCCTCACCAGAGGTTGCTAAGGAGCAGAACTCAGTCCAAAACATCTTCACATGTCTCAAA 1079
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1011 GCCTCACCAGAGGTTGCTAAGGAGCAGAACTCAGTCCAAAACATCTTCGCATGTCTCAAA 1070
Query 1080 AGGCCATGATTCTGTTGAGCCCAACAAGGCAGTTAATGTTGAAGAAAAGCCCTCAGCTCC 1139
||||||||||||||||||| ||||||||||||| |||| |||||||||||| ||||||||
Sbjct 1071 AGGCCATGATTCTGTTGAGTCCAACAAGGCAGTGAATGCTGAAGAAAAGCCGTCAGCTCC 1130
Query 1140 TGTTGAGGAGAATGTGATAGCTCTAGAGTTCCTTG-CCTCACTTGATAAGGAAAAAGTCA 1198
|||||||||||||| |||||||||||||||| ||| |||||||||| |||||||||||||
Sbjct 1131 TGTTGAGGAGAATGCGATAGCTCTAGAGTTC-TTGGCCTCACTTGACAAGGAAAAAGTCA 1189
Query 1199 CATTTATGAGTGATCAGAATGCGCTGGAAAATCTGGAAGTGCAGGAGATGGATACAGAGG 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 CATTTATGAGTGATCAGAATGCGCTGGAAAATCTGGAAGTGCAGGAGATGGATACAGAGG 1249
Query 1259 AGCCGTCAAAGGAAAATGATGTTTCAAAAGATGTCAATCTGACTTCCAACTTAAATGAAA 1318
|||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||
Sbjct 1250 AGCCGTCAAAGGAAAATGATGTCTCAAAAGACGTCAATCTGACTTCCAACTTAACTGAAA 1309
Query 1319 TTCTCAGAGCAAACGAAGCCCTTGAGGAAATTGATGATGAAGAGAATAGAGAGGAGATGG 1378
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1310 TTCTTAGAGCAAACGAAGCCCTCGAGGAAATTGATGATGAAGAGAATAGAGAGGAGATGG 1369
Query 1379 AGCTAGAAGAGATAGATGAGGGATGCATGTATCAACTCAATGACATTGGGTCCAGAACTT 1438
|||| ||||| |||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1370 AGCTGGAAGAAATAGATGATGGATGCATGTATCAACTCAATGACATTGGGTCCAAAACTT 1429
Query 1439 CTACAGGAGGATGGTTTGTATCAGAGGGCGAGGCAGTTATACTTGCTCATGATGATGGCT 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 CTACAGGAGGATGGTTTGTATCAGAGGGCGAGGCAGTTATACTTGCTCATGATGATGGCT 1489
Query 1499 CATGCTCCTATTATGATGTCGCTAACTCTGAG 1530
| || |||||||| ||||||||||||||||||
Sbjct 1490 CGTGTTCCTATTACGATGTCGCTAACTCTGAG 1521
Score = 2161 bits (1170), Expect = 0.0
Identities = 1310/1376 (95%), Gaps = 15/1376 (1%)
Strand=Plus/Plus
Query 1531 GTGAAATCTGTGTACAGTCCTCCAGATGGTATCTCACCAAATACATGGAGAGATTGCTGG 1590
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1603 GTGAAATCTGTGTACAGTCCTCCAGATGGTATCTCACCAAACACTTGGAGAGATTGCTGG 1662
Query 1591 ATAGTTCGTGCACCGGGTGCAGATGGTTGCTCAGGCAGATATGTCGTAGCTGCTTCTGCT 1650
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1663 GTAGTTCGTGCACCGGGTGCTGATGGCTGCTCAGGCAGATATGTCGTAGCTGCTTCTGCT 1722
Query 1651 GGGAATACCTTAGAGTCTGGCTTCTGTTCATGGGATTTCTACACGAAAGACATTAAGGCA 1710
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1723 GGGAATACCTTAGAATCTGGCTTTTGTTCATGGGATTTCTACACGAAAGACATTAAGGCA 1782
Query 1711 CTCCACATCGAGGACGGATCTTCAAGAGTTTCAAGAACAGCTCTTGCTCCTCTACCCAAT 1770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1783 CTCCACATCGAGGACGGATCTTCAAGAGTTTCAAGAACAGCTCTTGCTCCTCTACCCAAT 1842
Query 1771 AACACATCACATGGTAGGAACACTCCGGCTTGTGCAGTGGTACCAGAAACTCAACAATGG 1830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1843 AACACATCACATGGTAGGAACACTCCGGCTTGTGCAGTGGTACCAGAAACTCAACAATGG 1902
Query 1831 TGGTACAGACCGTGTGGTCCTCTTATAGCCTCAACCGGTAGTTTCCAAAGTGTAGTAAAG 1890
||||||||||||||||||||||||||||| ||||| |||||||| |||||| ||||||||
Sbjct 1903 TGGTACAGACCGTGTGGTCCTCTTATAGCATCAACTGGTAGTTTTCAAAGTATAGTAAAG 1962
Query 1891 GTGTTTGACATACGAGATGGGGAACAAATCATGAGATGGGAG-GTGCAGAATCCTGTGTC 1949
|| ||||||||||||||||||||||||||||||| ||||| | ||||| |||||||||||
Sbjct 1963 GTTTTTGACATACGAGATGGGGAACAAATCATGAAATGGG-GTGTGCAAAATCCTGTGTC 2021
Query 1950 AGCTTTAGATTATTCGAGCCCTTTACAATGGAGGAATCGAGGAAAACTTGTCATAGCAGA 2009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2022 AGCTTTAGATTATTCGAGCCCTTTACAATGGAGGAATCGAGGAAAACTTGTCATAGCCGA 2081
Query 2010 ATCTGAAGCAATTTCTGTTTGGGATGTCAATTCCCTTCACCCTGAAGCACAGCATACCAT 2069
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2082 AACTGAAGCAATTTCTGTTTGGGATGTCAATTCCCTTCACCCTGAAGCACAGCACACCAT 2141
Query 2070 TTCCTCTTCAGGGAGAAAAATCTCGGCTTTTCATATCAATAACACAGATGCTGAAGTTGG 2129
||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 2142 TTCCTCTTCAGGGCGAAAAATCTCAGCTTTTCATATCAACAACACAGATGCTGAAGTTGG 2201
Query 2130 AGGTGGTGTTCGTCAAAGAGTAAGTTCCTTGGATGCTGAAGGCAACGATGGAGTTTTCTG 2189
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 2202 GGGTGGTGTTCGTCAAAGAGTAAGTTCCTTGGATGCTGAAGGAAACGACGGAGTATTCTG 2261
Query 2190 CACTAGTGATTCAATCAACATCTTGGATTTTCGTAACCCATCTGGTATTGGTGCTAAAAT 2249
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 2262 CACTAGTGATTCAATCAACATCTTAGATTTTCGTAACCCATCTGGCATTGGTGCTAAAAT 2321
Query 2250 CCCCAAACTCGGTGTTAATGCTCAATGTGTATCATCTCGAGGAGATTCAGTGTTTCTAGG 2309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2322 CCCCAAACTCGGTGTTAATGCTCAATGTGTATCATCTCGAGGAGATTCAGTGTTTCTAGG 2381
Query 2310 ATGTACCAATCAGAAATCAACTGCTAAA-AAACATATGGCTTCTTCATCTCAAGTGCAGC 2368
||||||||||||||||||||||| | || ||||| ||||||||||| ||||| |||||||
Sbjct 2382 ATGTACCAATCAGAAATCAACTG-TCAAGAAACAAATGGCTTCTTCTTCTCAGGTGCAGC 2440
Query 2369 AATTCTCCATAAGGAAACAGCGTCTCGTGAGCACATACAGTCTGCCAGACTCTAACTCTC 2428
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 2441 AATTCTCCATAAGGAAACAGCGTCTCGTGAGCACATACAGTCTGCCTGACTCAAACTCTC 2500
Query 2429 ATCCGCACCACTCTGCAATAACCCAAGTCTGGGGAAATTCAAATTTTGTCATGGCTACTT 2488
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2501 ACCCGCACCACTCTGCAATAACCCAAGTCTGGGGAAATTCAAATTTTGTCATGGCTACTT 2560
Query 2489 CTGGTATGGGACTATTCGTGTTTGATACTGCAAAAGAAGAGACCTTGCAACAACAGCCTA 2548
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2561 CTGGTATGGGACTATTTGTGTTTGATACTGCAAAAGAAGAGACCTTGCAACAACAGCC-A 2619
Query 2549 T-GACAAGCGAGCG-TGGAAGCGTTCAAACAGTAAGAGAGATTATCGGTCCAAACGATAT 2606
| |||||| || | ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2620 TTGACAAGTGA-CTATGGAAGCGTTCAAACAGTAAGAGAGATCATCGGTCCAAACGATAT 2678
Query 2607 GTATTGCCCGTCATTTGATTACTCAGGTTGTCGTGTACTCCTCATCTCAAGAGACCGCCC 2666
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2679 GTATTGCCCGTCATTTGACTACTCAGGTTGTCGTGTACTCCTCATCTCAAGAGACCGCCC 2738
Query 2667 GGCTTTATGGAGATACCTCTTATAGGTAAGTAAATCAAGCTAAAGATGGTGTTCCCACGA 2726
||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||
Sbjct 2739 GGCTTTATGGAGATACCTCTTATAGGTGAGTAAATCAATCTAAAGATGGTGATCCCACGA 2798
Query 2727 GACCTAT-TT-AGCAAGTGTTAAGCACACCTTGTGCTGCTT-CTCTTGTGTTGTGTTCAT 2783
||||||| || ||||||||||| ||||| |||||||||||| ||||||||||||||||||
Sbjct 2799 GACCTATATTTAGCAAGTGTTA-GCACAGCTTGTGCTGCTTTCTCTTGTGTTGTGTTCAT 2857
Query 2784 ACTTTTGCTCTCTGTTACCAACTTTGATAG-TTTTCTGAATTCTCCTTTCATGCTATTTG 2842
||| ||||||| ||||||||||| |||| | ||||||| |||||| |||| |||||||||
Sbjct 2858 ACTATTGCTCTTTGTTACCAACTATGAT-GCTTTTCTGGATTCTC-TTTCGTGCTATTTG 2915
Query 2843 CTTATTTGGCTTTACTCTGTACATACTTGTGGTGTTTTGATCAATTTAATAGGTTT 2898
|||||||| ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 2916 CTTATTTGACTTTACTCTGTACATACATGTGGTGTTTTGATCAATTTCCTAGGTTT 2971
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 144029293353
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5