BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493479
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14301.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 394 4e-109
> AT4G14301.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G23450.1); Has
101 Blast hits to 93 proteins in 34 species: Archae - 0; Bacteria
- 27; Metazoa - 16; Fungi - 5; Plants - 34; Viruses
- 3; Other Eukaryotes - 16 (source: NCBI BLink). | chr4:8233764-8234227
REVERSE LENGTH=399
Length=399
Score = 394 bits (213), Expect = 4e-109
Identities = 353/413 (85%), Gaps = 40/413 (10%)
Strand=Plus/Plus
Query 40 ATGGGGCGTCTC---GTAAACGGAGCTGCTCTCTTGGCTTTGTTATGGTTC-A-G----T 90
|||||| ||||| || |||||||||||||||||||||||||| |||||| | | |
Sbjct 1 ATGGGGAGTCTCGTTGTTAACGGAGCTGCTCTCTTGGCTTTGTTGTGGTTCAATGTTTTT 60
Query 91 GT--T---TT-TGTGGCTGCGAGAGAAGGTGTGACCTTTGGAAAAAATGAAGAGGAGAAG 144
|| | || ||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 61 GTGGTGAATTATGTGGCTGCAAGAGAAGGTGTGACCTTTGGAAAAGATGAAGAGGAGAAG 120
Query 145 ACCTTCATAGGCGGTGGAAAGGGCTTTGGAGGCGGTC-TTGGT---GGTGGATTTGGCAA 200
||| |||||||||| ||||||||||||||||| | | ||||| |||||| |||
Sbjct 121 ACCATCATAGGCGGAGGAAAGGGCTTTGGAGG-TGCCATTGGTAAAGGTGGA---GGC-- 174
Query 201 AGGAGGT-GGAATCGCAGGCGGGATAGGCAAAGGCGGTGGTTTTGGAGGTGGC---A-T- 254
| | || | || ||| |||||||||||||||||||||||||||||| | |
Sbjct 175 A--TTTTCGG---C-CA--CGGAATAGGCAAAGGCGGTGGTTTTGGAGGTGGCATTAGTA 226
Query 255 -AGGTGGAGGCTTTGGCGGGGGAATCGGCAAAGGTGGTGGGATTGGAGGCGGCTTTGGAA 313
||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||
Sbjct 227 AAGGTGGAGGCTTTGGTGGTGGAATCGGCAAAGGTGGTGGGATTGGAGGCGGCATTGGAA 286
Query 314 AAGGTAAAGGATGGGGCTTTGGCGGCGGAATAGGCAAAGGTGGTGGGATTGGAGGCGGCA 373
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 287 AAGGTAAAGGATGGGGCTTTGGCGGCGGAATAGGCAAAGGTGGTGGTATTGGAGGCGGCA 346
Query 374 CTGGAAAAGGTAAAGGATGGGCCTTTGGTGGTGGCTGGTTTGGACACCACTGA 426
|||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 347 TTGGAAAAGGTAAAGGATGGGGCTTTGGTGTTGGCTGGTTTGGACACCACTGA 399
Score = 130 bits (70), Expect = 1e-29
Identities = 126/151 (83%), Gaps = 11/151 (7%)
Strand=Plus/Plus
Query 255 AGGTGGAGGC--TTT-GGCGGGGGAATCGGCAAAGGTGGTGGGATTGGAGGCGGCTTTGG 311
|||||||||| ||| ||| ||||| |||||||| ||||| ||||||| ||| ||
Sbjct 165 AGGTGGAGGCATTTTCGGCCACGGAATAGGCAAAGGCGGTGGTTTTGGAGGTGGCATT-- 222
Query 312 AAAAGGTAAAGGATGG-GGCTTTGGCGGCGGAATAGGCAAAGGTGGTGGGATTGGAGGCG 370
| ||||||| ||| |||||||| || ||||| |||||||||||||||||||||||||
Sbjct 223 ---A-GTAAAGG-TGGAGGCTTTGGTGGTGGAATCGGCAAAGGTGGTGGGATTGGAGGCG 277
Query 371 GCACTGGAAAAGGTAAAGGATGGGCCTTTGG 401
||| |||||||||||||||||||| ||||||
Sbjct 278 GCATTGGAAAAGGTAAAGGATGGGGCTTTGG 308
Score = 117 bits (63), Expect = 9e-26
Identities = 76/82 (93%), Gaps = 2/82 (2%)
Strand=Plus/Plus
Query 255 AGG-TGGAGGCTTTGGCGGGGGAATCGGCAAAGGTGGTGGGATTGGAGGCGGCTTTGGAA 313
||| ||| ||||||||||| ||||| |||||||||||||| |||||||||||| ||||||
Sbjct 294 AGGATGG-GGCTTTGGCGGCGGAATAGGCAAAGGTGGTGGTATTGGAGGCGGCATTGGAA 352
Query 314 AAGGTAAAGGATGGGGCTTTGG 335
||||||||||||||||||||||
Sbjct 353 AAGGTAAAGGATGGGGCTTTGG 374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20207635098
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5