BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493479 Length=426 Score E Sequences producing significant alignments: (Bits) Value AT4G14301.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 394 4e-109 > AT4G14301.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23450.1); Has 101 Blast hits to 93 proteins in 34 species: Archae - 0; Bacteria - 27; Metazoa - 16; Fungi - 5; Plants - 34; Viruses - 3; Other Eukaryotes - 16 (source: NCBI BLink). | chr4:8233764-8234227 REVERSE LENGTH=399 Length=399 Score = 394 bits (213), Expect = 4e-109 Identities = 353/413 (85%), Gaps = 40/413 (10%) Strand=Plus/Plus Query 40 ATGGGGCGTCTC---GTAAACGGAGCTGCTCTCTTGGCTTTGTTATGGTTC-A-G----T 90 |||||| ||||| || |||||||||||||||||||||||||| |||||| | | | Sbjct 1 ATGGGGAGTCTCGTTGTTAACGGAGCTGCTCTCTTGGCTTTGTTGTGGTTCAATGTTTTT 60 Query 91 GT--T---TT-TGTGGCTGCGAGAGAAGGTGTGACCTTTGGAAAAAATGAAGAGGAGAAG 144 || | || ||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 61 GTGGTGAATTATGTGGCTGCAAGAGAAGGTGTGACCTTTGGAAAAGATGAAGAGGAGAAG 120 Query 145 ACCTTCATAGGCGGTGGAAAGGGCTTTGGAGGCGGTC-TTGGT---GGTGGATTTGGCAA 200 ||| |||||||||| ||||||||||||||||| | | ||||| |||||| ||| Sbjct 121 ACCATCATAGGCGGAGGAAAGGGCTTTGGAGG-TGCCATTGGTAAAGGTGGA---GGC-- 174 Query 201 AGGAGGT-GGAATCGCAGGCGGGATAGGCAAAGGCGGTGGTTTTGGAGGTGGC---A-T- 254 | | || | || ||| |||||||||||||||||||||||||||||| | | Sbjct 175 A--TTTTCGG---C-CA--CGGAATAGGCAAAGGCGGTGGTTTTGGAGGTGGCATTAGTA 226 Query 255 -AGGTGGAGGCTTTGGCGGGGGAATCGGCAAAGGTGGTGGGATTGGAGGCGGCTTTGGAA 313 ||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||| Sbjct 227 AAGGTGGAGGCTTTGGTGGTGGAATCGGCAAAGGTGGTGGGATTGGAGGCGGCATTGGAA 286 Query 314 AAGGTAAAGGATGGGGCTTTGGCGGCGGAATAGGCAAAGGTGGTGGGATTGGAGGCGGCA 373 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 287 AAGGTAAAGGATGGGGCTTTGGCGGCGGAATAGGCAAAGGTGGTGGTATTGGAGGCGGCA 346 Query 374 CTGGAAAAGGTAAAGGATGGGCCTTTGGTGGTGGCTGGTTTGGACACCACTGA 426 |||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 347 TTGGAAAAGGTAAAGGATGGGGCTTTGGTGTTGGCTGGTTTGGACACCACTGA 399 Score = 130 bits (70), Expect = 1e-29 Identities = 126/151 (83%), Gaps = 11/151 (7%) Strand=Plus/Plus Query 255 AGGTGGAGGC--TTT-GGCGGGGGAATCGGCAAAGGTGGTGGGATTGGAGGCGGCTTTGG 311 |||||||||| ||| ||| ||||| |||||||| ||||| ||||||| ||| || Sbjct 165 AGGTGGAGGCATTTTCGGCCACGGAATAGGCAAAGGCGGTGGTTTTGGAGGTGGCATT-- 222 Query 312 AAAAGGTAAAGGATGG-GGCTTTGGCGGCGGAATAGGCAAAGGTGGTGGGATTGGAGGCG 370 | ||||||| ||| |||||||| || ||||| ||||||||||||||||||||||||| Sbjct 223 ---A-GTAAAGG-TGGAGGCTTTGGTGGTGGAATCGGCAAAGGTGGTGGGATTGGAGGCG 277 Query 371 GCACTGGAAAAGGTAAAGGATGGGCCTTTGG 401 ||| |||||||||||||||||||| |||||| Sbjct 278 GCATTGGAAAAGGTAAAGGATGGGGCTTTGG 308 Score = 117 bits (63), Expect = 9e-26 Identities = 76/82 (93%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 255 AGG-TGGAGGCTTTGGCGGGGGAATCGGCAAAGGTGGTGGGATTGGAGGCGGCTTTGGAA 313 ||| ||| ||||||||||| ||||| |||||||||||||| |||||||||||| |||||| Sbjct 294 AGGATGG-GGCTTTGGCGGCGGAATAGGCAAAGGTGGTGGTATTGGAGGCGGCATTGGAA 352 Query 314 AAGGTAAAGGATGGGGCTTTGG 335 |||||||||||||||||||||| Sbjct 353 AAGGTAAAGGATGGGGCTTTGG 374 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20207635098 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5