BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493483
Length=603
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14270.1 | Symbols: | Protein containing PAM2 motif which m... 669 0.0
> AT4G14270.1 | Symbols: | Protein containing PAM2 motif which
mediates interaction with the PABC domain of polyadenyl binding
proteins. | chr4:8218378-8219229 FORWARD LENGTH=687
Length=687
Score = 669 bits (362), Expect = 0.0
Identities = 475/529 (90%), Gaps = 9/529 (2%)
Strand=Plus/Plus
Query 1 ACTCGCTCTAAGACTCAGTTTGACTCGTCGA-CTTTGTAGCAGTGTGA-TTTGAGGTGGA 58
|||||||||||||| ||||||||||||| || | | | ||||||| ||||||||| |
Sbjct 4 ACTCGCTCTAAGACCCAGTTTGACTCGTTGATCAACG-A-AAGTGTGAGTTTGAGGTGAA 61
Query 59 AGATGACGGCGATGGTAGATCGGAGTTTATCGACGCTAAATCCAAACGCGCCGGTGTTTG 118
|||||||||||| | |||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 62 AGATGACGGCGACGATAGATCGGAGGTTATCAACGCTGAATCCAAACGCGCCGGTGTTTG 121
Query 119 ATCCGGTGGGATTTCGTGAGGTGGAGGATTTTTCACCGAAATGGTGGGATCTGGTGACGA 178
||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 122 ATCCGGTGGAATTTCGTGAGGTGGAGGATTTTTCACCGAAATGGTGGGATCTAGTAACGA 181
Query 179 CTTCCAAATGGTTCCGTGACTTTTGGCTCAGTGCTAACTCAGAGTTTGAGTTCGTCGGTG 238
|||| ||||||||||||||||||||||||||||||||||| ||| ||||||| |||| |
Sbjct 182 CTTCGAAATGGTTCCGTGACTTTTGGCTCAGTGCTAACTCTGAGAATGAGTTCCTCGGCG 241
Query 239 GCGATGATTTCTCAGTTATGGAAGAAGAGTTCGAGGAGATGATCGCGTCCTCTGATGGTG 298
|||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 242 GCGACGATTTCTCAGTTATGGAAGAAGAGTTCGAGGAGATGATCGCATCGTCTGATGGTG 301
Query 299 GATCTACGGCTGATACAGTAACCGAAGCAGATGTTGCTAAGT-ATTTGAAGATGCTTTTG 357
|||| | |||||||||||| || ||||||||||| |||| || |||||||||||||||||
Sbjct 302 GATCCATGGCTGATACAGTTACAGAAGCAGATGTGGCTA-GTTATTTGAAGATGCTTTTG 360
Query 358 AACATAGCTGACTCTAAGAAAGAGAAGATTTATAGAGCTAAGGTTTCTTCTTGTTCACCG 417
|||||||| || |||| ||||||||||||||||||| | |||||||| |||||||||||
Sbjct 361 AACATAGCGGAGTCTACGAAAGAGAAGATTTATAGATCGAAGGTTTCGTCTTGTTCACCA 420
Query 418 AAGTATAATCAGAAGAGGAAGTATATGAATCCAAACTTCAATTGTCGCCGGAATCATCAC 477
|||||||||||||||| | ||| |||||||| ||||| ||||||||||||||||||||
Sbjct 421 AAGTATAATCAGAAGA--A-GTACATGAATCCGAACTTTAATTGTCGCCGGAATCATCAT 477
Query 478 ATTTATCAGCCACGGTGAAGTTTCTATAAGAAACAAAGCTCTTTTTCTT 526
|| ||||||||||||||||| ||||| ||| |||||||||||| |||||
Sbjct 478 ATCTATCAGCCACGGTGAAGCTTCTAGAAGGAACAAAGCTCTTCTTCTT 526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29035336966
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5