BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493485
Length=1960
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14240.1 | Symbols: | CBS domain-containing protein with a ... 2878 0.0
AT4G14230.1 | Symbols: | CBS domain-containing protein with a ... 1472 0.0
> AT4G14240.1 | Symbols: | CBS domain-containing protein with
a domain of unknown function (DUF21) | chr4:8204347-8207408
REVERSE LENGTH=1985
Length=1985
Score = 2878 bits (1558), Expect = 0.0
Identities = 1859/1997 (93%), Gaps = 50/1997 (3%)
Strand=Plus/Plus
Query 1 ATGTTGGTGAGATCCAACGAATTATAAAATTATCAAAAAGAAGCaaaaaaaaaaaaaaaa 60
||||||||||||||||||||||||||||||||||||||||| || |||| ||||||
Sbjct 1 ATGTTGGTGAGATCCAACGAATTATAAAATTATCAAAAAGAGGC----AAAATTAAAAAA 56
Query 61 aaaGGTCGTGTGCCCAGAGAATCACATATACAGAGAGA-T--TCATCGAATCAT-CAGCT 116
||||||||||| ||||||||||||| | ||||||||| | |||||||||||| ||||
Sbjct 57 GAAGGTCGTGTGACCAGAGAATCACAAACACAGAGAGATTCATCATCGAATCATAAAGCT 116
Query 117 CTGTTTTCTATAAG--AAGATGCATCTGATTAATGCGGTGGCGGCGGCGAGGATGTTATC 174
|||||||| | ||| || ||||||||||||||||||||||||||||||||||| |||||
Sbjct 117 CTGTTTTCAAGAAGAAAATATGCATCTGATTAATGCGGTGGCGGCGGCGAGGATTTTATC 176
Query 175 CGGAATCGGACAATTTAACGGTAACGGA-GGTGGTGAAGCGATTCCGTTTGGATCGTTTG 233
|||||||||||||| ||||||||| | || || |||||||||||||||||||||||||
Sbjct 177 CGGAATCGGACAATCTAACGGTAA-TAACGGAGGAGAAGCGATTCCGTTTGGATCGTTTG 235
Query 234 AGTGGATCACTTACGCCGGAATCTCTTGTTTCCTCGTACTCTTCGCCGGGATTATGTCTG 293
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 236 AGTGGATCACTTACGCCGGAATATCTTGTTTCCTCGTACTCTTCGCCGGGATTATGTCTG 295
Query 294 GTCTTACTTTGGGACTTATGTCTCTTGGTCTTGTCGAGCTTGAGATTCTTCAACGTAGTG 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 GTCTTACTTTGGGACTTATGTCTCTTGGTCTTGTCGAGCTTGAGATTCTTCAACGTAGTG 355
Query 354 GTACTCCTAACGAGAAGAAACAAGCCGCTGCGATTTTTCCGGTTGTTCAGAAACAGCATC 413
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GTACTCCTAATGAGAAGAAACAAGCCGCTGCGATTTTTCCGGTTGTTCAGAAACAGCATC 415
Query 414 AGCTTTTAGTGACACTGCTTCTGTGTAATGCTATGGCTATGGAGGGGCTTCCTATATACT 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 416 AGCTTTTAGTGACACTGCTTCTGTGTAATGCTATGGCTATGGAGGGGCTTCCTATATATT 475
Query 474 TGGATAAGTTGTTCAATGAATACGTTGCGATTATTCTTTCGGTCACATTCGTTCTTGCTT 533
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 476 TGGATAAGTTATTCAATGAATACGTTGCGATTATTCTTTCTGTCACATTCGTTCTTGCTT 535
Query 534 TCGGTGAGGTTATTCCTCAAGCGATATGCACTAGGTATGGACTTGCGGTTGGAGCGAATT 593
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 536 TCGGTGAGGTTATTCCTCAAGCGATATGCACTAGGTATGGACTCGCGGTTGGAGCGAATT 595
Query 594 TCGTCTGGCTTGTCCGCATTTTAATGACTCTCTGCTACCCTATTGCCTTTCCCATTGGCA 653
| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 596 TTGTCTGGCTTGTCCGCATTTTAATGACTCTCTGCTATCCGATTGCCTTTCCCATTGGCA 655
Query 654 AGATCTTAGATTTGGTGCTGGGACACAATGACGCTTTATTTAGGCGGGCTCAGTTGAAAG 713
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 656 AGATTTTAGATTTGGTGCTGGGACACAATGATGCTTTATTTAGGCGGGCTCAGTTGAAAG 715
Query 714 CTCTTGTATCCATTCACAGCCAAGAGGCTGGTAAGGGAGGTGAGCTTACACATGATGAGA 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 CTCTTGTATCCATTCACAGCCAAGAGGCTGGTAAGGGAGGTGAGCTTACACATGATGAGA 775
Query 774 CGACCATCATTAGTGGAGCTCTTGATTTGACTGAGAAGACTGCACAAGAAGCCATGACAC 833
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 CGACAATCATTAGTGGAGCTCTTGATTTGACTGAGAAGACTGCACAAGAAGCCATGACAC 835
Query 834 CAATTGAATCTACCTTCTCCTTGGATGTTAATTCAAAATTGGATTGGGAAGCTATGGGTA 893
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 836 CAATTGAGTCTACCTTCTCCTTGGATGTAAATTCAAAATTGGATTGGGAAGCTATGGGGA 895
Query 894 AGATTTTAGCACGAGGCCATAGCCGCGTTCCTGTCTACTCCGGGAATCCAAAAAACGTTA 953
||||| | |||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 896 AGATTCTGGCACGAGGCCATAGCCGCGTTCCTGTCTACTCTGGGAATCCGAAAAACGTTA 955
Query 954 TTGGCCTTCTCTTGGTGAAGAGTCTACTTACTGTTCGCCCTGAAACAGAGACCCTTGTCA 1013
| || |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 956 TCGGACTTCTCTTGGTGAAGAGTCTTCTTACAGTTCGCCCTGAAACAGAGACCCTTGTCA 1015
Query 1014 GCGCAGTTTGTATACGCCGGATTCCAAGGGTTCCAGCTGATATGCCTCTGTATGATATAC 1073
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1016 GCGCAGTTTGTATACGCCGGATTCCAAGGGTTCCAGCTGATATGCCTCTCTATGATATAC 1075
Query 1074 TGAATGAGTTTCAAAAGGGAAGTAGTCACATGGCTGCAGTTGTGAAGGTTAAGGGGAAAA 1133
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1076 TGAATGAGTTTCAAAAGGGAAGCAGTCACATGGCTGCAGTTGTGAAGGTTAAGGGGAAAA 1135
Query 1134 GCAAAGTTCCTCCTACAACTTTGCCTGAAGAAAACACTTGC-GAAAGCAATGACTCCGAC 1192
||||||| || ||| ||||||||| ||||||| ||||| | ||||||||||||||||||
Sbjct 1136 GCAAAGTCCCACCTTCAACTTTGCTTGAAGAACACACT-GATGAAAGCAATGACTCCGAC 1194
Query 1193 TTGACTGCACCTCTGTTACTAAAACGAGATGGAAACCACGACAATGTCATTGTCACAATC 1252
|||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1195 TTGACTGCACCTTTGTTACTAAAACGAGAGGGAAACCATGACAATGTCATTGTCACAATC 1254
Query 1253 GACAAGGCTAATGGACAATCGTTCTATCAAAACAACGAGAGTGGACCACACGGGTTCTCA 1312
|||||||||||||||||||| |||| ||||||||||||||||||||| |||||||| |||
Sbjct 1255 GACAAGGCTAATGGACAATCTTTCTTTCAAAACAACGAGAGTGGACCTCACGGGTTTTCA 1314
Query 1313 CATACTTCAGAGGCTATCGAGGATGGCGAAGTAATCGGTATCATCACTTTAGAAGATGTG 1372
|||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 1315 CATACTTCAGAGGCTATCGAGGATGGTGAGGTAATTGGTATCATCACTTTAGAAGATGTC 1374
Query 1373 TTTGAAGAACTTTTGCAAGAAGAGATTGTGGATGAAACAGATGAATATGTTGACGTACAT 1432
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1375 TTTGAAGAACTTTTGCAAGAAGAGATTGTGGATGAAACTGATGAATATGTTGACGTACAT 1434
Query 1433 AAAAGGATTCGAGTAGCAGCAGCAGCAGCTGCCTCATCAATAGCGAGAGCTCCTTCAAGC 1492
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1435 AAAAGGATTCGAGTAGCAGCAGCAGCGGCTGCTTCATCAATAGCGAGAGCTCCTTCAAGC 1494
Query 1493 CGGAAATTGCTTGCACAAAAGGGAACTGGAGGACAAAATAAGCAAGGGCAGACGAATAAA 1552
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 CGGAAGTTGCTTGCGCAAAAGGGAACTGGAGGACAAAATAAGCAAGGGCAGACGAATAAA 1554
Query 1553 GGTGCTGGTCAGGAACAAGATAAAATGCTTGGAACTATTACTGAGCCGATTCGAAGAAAC 1612
| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1555 GTTCCTGGTCAGGAACAAGATAAAATGCTTGGAACTATTACCGAGCCGATTCGAAGAAAC 1614
Query 1613 AACTGATATTATGTTGTTGCTTAAGGAGTCAAAAACTCTGTTGCCGTATAAAGAAAGAAA 1672
||||||| || |||| |||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1615 AACTGATGTTGTGTTCTTGCTTAAGGAGGCAAAAACTCTGTTGCGGTATAAAGAAAGAAA 1674
Query 1673 ACAAAGAATAAACTA-AATGATCCAGGTTCTTCTGTATACTT-GATCCATCACATAAATT 1730
|||||||||||| || || ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1675 ACAAAGAATAAATTATAA-GATCCAGGTTCTTCTGTATACTTTGATCCATCACATAAATT 1733
Query 1731 ACATATATA-AGAAA-A------GTCAGCAGAAGAAATGGTTCGTCCCAATTTTTGAAGA 1782
| ||||||| | ||| | ||||||||||| |||||||| ||| |||||||||||
Sbjct 1734 ATATATATATAAAAATATAAAAAGTCAGCAGAAGCAATGGTTCAACCCGATTTTTGAAGA 1793
Query 1783 TGTTTTGTTTTCTTGTATTCTACAAAATACGTACAATTTTGTAATTTACTCCGTAACTTG 1842
|| ||||||| |||||||| |||||||||| |||||||| ||||||||||||||||||||
Sbjct 1794 TGCTTTGTTTCCTTGTATTATACAAAATACCTACAATTT-GTAATTTACTCCGTAACTTG 1852
Query 1843 ATTCtttttt--ttttt---C------------GTAGAATGCAGTAGCAATAATTAGCTA 1885
|||||||||| ||||| | |||||||||||||| |||| |||||||
Sbjct 1853 ATTCTTTTTTCCTTTTTGTTCACTCAATTTTTCGTAGAATGCAGTAGTAATAGTTAGCTA 1912
Query 1886 TATGGTAACATACCAGT-GTGGCCGCTATTTTGTAATTGCAATAGTTTTGAAACAATGGA 1944
|||||| |||||| || ||||||||||||||||||||||| | ||| |||||||||||
Sbjct 1913 TATGGTCACATACT-GTTGTGGCCGCTATTTTGTAATTGCACT--TTT-GAAACAATGGA 1968
Query 1945 TCAAATA-TTTCTCCAT 1960
||||| | |||||||||
Sbjct 1969 TCAAA-AGTTTCTCCAT 1984
> AT4G14230.1 | Symbols: | CBS domain-containing protein with
a domain of unknown function (DUF21) | chr4:8200667-8203238
REVERSE LENGTH=1779
Length=1779
Score = 1472 bits (797), Expect = 0.0
Identities = 1229/1432 (86%), Gaps = 52/1432 (4%)
Strand=Plus/Plus
Query 130 GAAGATGCATCTGATTAATGCGGTGGCGGCGGCGAGGATGTTATCCGGAATCGGACAATT 189
||||||||||| |||||||||||||| ||||||||||||||| |||||||| | ||||
Sbjct 105 GAAGATGCATCCGATTAATGCGGTGGTTGCGGCGAGGATGTTAGCCGGAATCAGTCAATC 164
Query 190 TAACG-GTAACGGAGGTGGTGAAGCGATTCCGTTTGGATCGTTTGAGTGGATCACTTACG 248
||||| | || | | || |||||||||||||||||| ||||||||||||||||||
Sbjct 165 TAACGCCTTAC--A--AAGCGAGGCGATTCCGTTTGGATCGCTTGAGTGGATCACTTACG 220
Query 249 CCGGAATCTCTTGTTTCCTCGTACTCTTCGCCGGGATTATGTCTGGTCTTACTTT-GGGA 307
||||||||||||||||||| || ||||||||||| |||||||||||||| ||||| |||
Sbjct 221 CCGGAATCTCTTGTTTCCTTGTTCTCTTCGCCGGAATTATGTCTGGTCTCACTTTAGGG- 279
Query 308 CTTATGTCTCTTGGTCTTGTCGAGCTTGAGATTCTTCAACGTAGTGGTACTCCTAACGAG 367
||||||||||| ||||| || ||||| |||||||| ||||| ||||||||||| || |||
Sbjct 280 CTTATGTCTCTCGGTCTCGTTGAGCTCGAGATTCTCCAACGGAGTGGTACTCCAAAAGAG 339
Query 368 AAGAAACAAGCCGCTGCGATTTTTCCGGTTGTTCAGAAACAGCATCAGCTTTTAGTGACA 427
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 AAGAAACAATCTGCTGCGATTTTTCCGGTTGTTCAGAAACAGCATCAGCTTTTAGTGACT 399
Query 428 CTGCTTCTGTGTAATGCTATGGCTATGGAGGGGCTTCCTATATACTTGGATAAGTTGTTC 487
|||||||||| ||||||| | ||||||||||||||||||||||||||||||||| | |||
Sbjct 400 CTGCTTCTGTTTAATGCTCTTGCTATGGAGGGGCTTCCTATATACTTGGATAAGATATTC 459
Query 488 AATGAATACGTTGCGATTATTCTTTCGGTCACATTCGTTCT-TGCTTTCGGTGAGGTTAT 546
||||| || ||||| |||||||| || ||||| |||||||| | | || || ||||||||
Sbjct 460 AATGAGTATGTTGCTATTATTCTATCCGTCACTTTCGTTCTATTCGTT-GGAGAGGTTAT 518
Query 547 TCCTCAAGCGATATGCACTAGGTATGGACTTGCGGTTGGAGCGAATTTCGTCTGGCTTGT 606
||||||||| ||||| ||||| |||||||| || || ||||| ||||| |||||||||||
Sbjct 519 TCCTCAAGCTATATGTACTAGATATGGACTAGCAGTGGGAGCTAATTTGGTCTGGCTTGT 578
Query 607 CCGCATTTTAATGACTCTCT-GCTACCCTAT-TGCCTTTCCCATTGGCAA-GATCTTAGA 663
|| || |||||| ||| | | ||||| || | | ||||| |||| ||| ||| || ||
Sbjct 579 TCGTATCTTAATGGTTCTATCG-TACCCGATAT-CTTTTCCTATTG-CAAAGATGTTGGA 635
Query 664 TTTGGTGCTGGGACACAATGACGCTTTATTTAGGCGGGCTCAGTTGAAAGCTCTTGTATC 723
|| |||| |||||||||||||| ||||||||||||| |||||||| ||||||||||| ||
Sbjct 636 TTGGGTGTTGGGACACAATGACCCTTTATTTAGGCGAGCTCAGTTAAAAGCTCTTGTGTC 695
Query 724 CATTCACAGCCAAGAGGCTGGTAAGGGAGGTGAGCTTACACATGATGAGACGACCATCAT 783
||||||| | ||| ||||| ||||||||||| ||||||||||||||||| || || ||
Sbjct 696 CATTCACGGTGAAGCTGCTGGAAAGGGAGGTGAACTTACACATGATGAGACTACAATTAT 755
Query 784 TAGTGGAGCTCTTGATTTGACTGAGAAGACTGCACAAGAAGCCATGACACCAATTGAATC 843
|||||||| |||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 756 AAGTGGAGCACTTGATTTGACTGAAAAGACCGCTCAAGAAGCCATGACACCAATTGAATC 815
Query 844 TACCTTCTCCTTGGATGTTAATTCAAAATTGGATTGGGAAGCTATGGGTAAGATTTTAGC 903
|| || ||||||||||| |||||||| ||||| |||||||||||| ||||||| |||
Sbjct 816 AACGTTTTCCTTGGATGTAAATTCAAAGTTGGACCGGGAAGCTATGGATAAGATTCAAGC 875
Query 904 ACGAGGCCATAGCCGCGTTCCTGTCTACTCCGGGAATCCAAAAAACGTTATTGGCCTTCT 963
|||||| ||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 876 ACGAGGTCATAGCCGCGTTCCTGTCTACTCCGATAATCCAAAAAATGTTATTGGACTTCT 935
Query 964 CTTGGTGAAGAGTCTACTTACTGTTCGCCCTGAAACAGAGACCCTTGTCAGCGCAGTTTG 1023
||||||||||||||| ||||| |||||||||||||||| ||| ||||||||||||||| |
Sbjct 936 CTTGGTGAAGAGTCTCCTTACAGTTCGCCCTGAAACAGGGACTCTTGTCAGCGCAGTTGG 995
Query 1024 TATACGCCGGATTCCAAGGGTTCCAGCTGATATGCCTCTGTATGATATACTGAATGAGTT 1083
||||||||| |||||||||||||| ||| ||||||||||||||||||| |||||||||||
Sbjct 996 TATACGCCGAATTCCAAGGGTTCCGGCTAATATGCCTCTGTATGATATTCTGAATGAGTT 1055
Query 1084 TCAAAA-GGGAAGTAGTCACATGGCTGCAGTTGTGAAGGTTAAGGGGAAAAGCAAAGTTC 1142
|||||| |||| | ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1056 TCAAAAAGGGA-GCAGTCACATGGCTGCAGTTGTGAAGGTTAAGGGGAAAAGCAAAGGTC 1114
Query 1143 CTCCTACAACTTTGCCTGAAGAAAACA-CTTGCGAAAGCAA--T-----G-A-C---TCC 1189
|||| ||||||||| ||||||||| | | | |||||||| | | | | |||
Sbjct 1115 ATCCTTCAACTTTGCATGAAGAAAATAGCG-GTGAAAGCAACGTCTCAAGTAACAACTCC 1173
Query 1190 GACTTGACTGCACCTCTGTTACTAAAACGAGATGGAAACCACGACAATGTCATTGTCA-C 1248
|| |||||||||||||| |||||||| ||||| ||||||||||||| |||||||||| |
Sbjct 1174 GAGTTGACTGCACCTCTTTTACTAAAGCGAGAAGGAAACCACGACAGTGTCATTGTCCGC 1233
Query 1249 AATCGACAAGGCTAATGGACAATCGTTCTATCAAAACAACGAGAGTGG-ACCACACGGGT 1307
| |||||||||||||||||||||||||| |||| | | | | || | ||| ||||
Sbjct 1234 A-TCGACAAGGCTAATGGACAATCGTTC-ATCAG--CGA-G-GCC-GGCAG-ACAGGGGT 1285
Query 1308 TCTCACATACTTCAGAGGCTATCGAGGATGGCGAAGTAATCGGTATCATCACTTTAGAAG 1367
|||||||||||||||||| || |||||||| || ||||| ||||||||||| |||||||
Sbjct 1286 TCTCACATACTTCAGAGGAGATTGAGGATGGAGACGTAATTGGTATCATCACATTAGAAG 1345
Query 1368 ATGTGTTTGAAGAACTTTTGCAAGAAGAGATTGTGGATGAAACAGATGAATATGTTGACG 1427
|||||||||||||||||||||| || ||||||||||||||||||||||| ||| | ||||
Sbjct 1346 ATGTGTTTGAAGAACTTTTGCAGGAGGAGATTGTGGATGAAACAGATGAGTATATAGACG 1405
Query 1428 TACATAAAAGGATTCGAGTAGCAGC---AGCAGCAGCTG-CC-T--CATCAATAGCGAGA 1480
| |||||||||||||| || ||| | |||||||| || || | ||||| ||||||||
Sbjct 1406 TGCATAAAAGGATTCGTGTGGCAACTGTAGCAGCAG-TGGCCATTTCATCATTAGCGAGA 1464
Query 1481 GCTCCTTCAAGCCGGAAATTGCTTG-CACAAAAGGGAACTGGAGGAC-AAAA 1530
|| |||||| |||||| || |||| | ||||||| || |||||||| ||||
Sbjct 1465 GCACCTTCAGGCCGGAGGTTACTTGGCCCAAAAGG-AAGTGGAGGACCAAAA 1515
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97087854030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5