BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493487
Length=1652
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14230.1 | Symbols: | CBS domain-containing protein with a ... 2540 0.0
AT4G14240.1 | Symbols: | CBS domain-containing protein with a ... 1351 0.0
> AT4G14230.1 | Symbols: | CBS domain-containing protein with
a domain of unknown function (DUF21) | chr4:8200667-8203238
REVERSE LENGTH=1779
Length=1779
Score = 2540 bits (1375), Expect = 0.0
Identities = 1564/1655 (95%), Gaps = 14/1655 (1%)
Strand=Plus/Plus
Query 1 GACGACGACGATGCATCCGATTAATGCGGTGGTTGCGGCGAGGATGTTGGCCGGAATCAG 60
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 99 GACGACGAAGATGCATCCGATTAATGCGGTGGTTGCGGCGAGGATGTTAGCCGGAATCAG 158
Query 61 TCAATCTAACGCCTTAGAAAGCGAAGCAATCCCCTTTGGATCGCTTGAGTGGATCATTTA 120
|||||||||||||||| ||||||| || || || |||||||||||||||||||||| |||
Sbjct 159 TCAATCTAACGCCTTACAAAGCGAGGCGATTCCGTTTGGATCGCTTGAGTGGATCACTTA 218
Query 121 CGCCGGAATCTCTTGTTTCCTTGTTCTCTTCGCCGGAATTATGTCTGGTCTCACTTTAGG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 CGCCGGAATCTCTTGTTTCCTTGTTCTCTTCGCCGGAATTATGTCTGGTCTCACTTTAGG 278
Query 181 GCTTATGTCTCTCGGTCTCGTCGAGCTCGAGATTCTTCAACATAGTGGTACTCCAAAAGA 240
||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||
Sbjct 279 GCTTATGTCTCTCGGTCTCGTTGAGCTCGAGATTCTCCAACGGAGTGGTACTCCAAAAGA 338
Query 241 GAAGAAACAATCTGCTGCGATTTTTCCGGTTGTTCAGAAACAGCATCAGCTTTTAGTGAC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 339 GAAGAAACAATCTGCTGCGATTTTTCCGGTTGTTCAGAAACAGCATCAGCTTTTAGTGAC 398
Query 301 TCTGCTTCTGTTTAATGCACTTGCTATGGAGGGGCTTCCTATATACTTGGATAAGATATT 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 399 TCTGCTTCTGTTTAATGCTCTTGCTATGGAGGGGCTTCCTATATACTTGGATAAGATATT 458
Query 361 CAATGAGTATGTTGCTATTATTCTATCGGTCACTTTCGTGCTATTTGTCGGAGAGGTTAT 420
||||||||||||||||||||||||||| ||||||||||| ||||| || |||||||||||
Sbjct 459 CAATGAGTATGTTGCTATTATTCTATCCGTCACTTTCGTTCTATTCGTTGGAGAGGTTAT 518
Query 421 TCCTCAAGCTATATGTACTAGATATGGACTAGCAGTGGGAGCTAATTTGGTTTGGCTTGT 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 519 TCCTCAAGCTATATGTACTAGATATGGACTAGCAGTGGGAGCTAATTTGGTCTGGCTTGT 578
Query 481 CCGTATCTTGATGGTTCTGTCTTACCCGATATCTTTTCCTATTGCAAAGATGTTGGATTG 540
|||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 579 TCGTATCTTAATGGTTCTATCGTACCCGATATCTTTTCCTATTGCAAAGATGTTGGATTG 638
Query 541 GGTATTGGGACACAATGACCCTTTGTTTAGACGGGCTCAGTTGAAAGCTCTTGTGTCCAT 600
||| |||||||||||||||||||| ||||| || |||||||| |||||||||||||||||
Sbjct 639 GGTGTTGGGACACAATGACCCTTTATTTAGGCGAGCTCAGTTAAAAGCTCTTGTGTCCAT 698
Query 601 TCATGGTGAAGCTGCTGGAAAGGGAGGTGAACTTACACATGATGAGACCACAATCATAAG 660
||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 699 TCACGGTGAAGCTGCTGGAAAGGGAGGTGAACTTACACATGATGAGACTACAATTATAAG 758
Query 661 TGGAGCACTTGATTTGACGGAGAAGACTGCTCAAGAAGCCATGACTCCTATTGAATCAAC 720
|||||||||||||||||| || ||||| ||||||||||||||||| || |||||||||||
Sbjct 759 TGGAGCACTTGATTTGACTGAAAAGACCGCTCAAGAAGCCATGACACCAATTGAATCAAC 818
Query 721 CTTTTCCTTGGATGTAAATTCAAAGTTGGATAGGGAAGCTATGGATAAGATTCAAGCACG 780
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 819 GTTTTCCTTGGATGTAAATTCAAAGTTGGACCGGGAAGCTATGGATAAGATTCAAGCACG 878
Query 781 AGGTCACAGCCGCATTCCTGTCTACTCTGAGAATCCAAAGAATGTTATTGGACTTCTCTT 840
|||||| |||||| ||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 879 AGGTCATAGCCGCGTTCCTGTCTACTCCGATAATCCAAAAAATGTTATTGGACTTCTCTT 938
Query 841 GGTGAAGAGTCTACTTACAGTTCGCCCTGAAACAGGGACCCTTGTCAGTGCAGTTGGTAT 900
|||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 939 GGTGAAGAGTCTCCTTACAGTTCGCCCTGAAACAGGGACTCTTGTCAGCGCAGTTGGTAT 998
Query 901 ACGCCGAATTCCAAGGGTTCCAGCTGATATGCCTCTGTATGATATACTAAATGAGTTTCA 960
||||||||||||||||||||| ||| ||||||||||||||||||| || |||||||||||
Sbjct 999 ACGCCGAATTCCAAGGGTTCCGGCTAATATGCCTCTGTATGATATTCTGAATGAGTTTCA 1058
Query 961 AAAAGGGAGCAGTCACATGGCAGCAGTTGTGAAGGTTAACGGGAAAAGCAAAGGTCATCC 1020
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1059 AAAAGGGAGCAGTCACATGGCTGCAGTTGTGAAGGTTAAGGGGAAAAGCAAAGGTCATCC 1118
Query 1021 TTTAACTTTGCTTGAAGAAAATAGCAGTGAAAGCAACGTCTCAAGTAATAACTCCGAGTT 1080
|| |||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1119 TTCAACTTTGCATGAAGAAAATAGCGGTGAAAGCAACGTCTCAAGTAACAACTCCGAGTT 1178
Query 1081 GACTGCACCTCTGTTACTAAAGCGAGAAGGAAACCACGACAGTGTCATTGTCCGCATCGA 1140
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 GACTGCACCTCTTTTACTAAAGCGAGAAGGAAACCACGACAGTGTCATTGTCCGCATCGA 1238
Query 1141 CAAGGCTAATGGACAATCGTTCACCAGCGAGGCCGGCAGACACGGATTCTCGCATACTTC 1200
||||||||||||||||||||||| |||||||||||||||||| || ||||| ||||||||
Sbjct 1239 CAAGGCTAATGGACAATCGTTCATCAGCGAGGCCGGCAGACAGGGGTTCTCACATACTTC 1298
Query 1201 AGAGGAGATTGAAGATGGAGACGTAATTGGTATCATCACATTGGAAGATGTGTTTGAAGA 1260
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1299 AGAGGAGATTGAGGATGGAGACGTAATTGGTATCATCACATTAGAAGATGTGTTTGAAGA 1358
Query 1261 ACTTTTGCAGGAGGAGATTGTGGATGAAACAGATGAGTATATAGACGTTCATAAAAGGAT 1320
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1359 ACTTTTGCAGGAGGAGATTGTGGATGAAACAGATGAGTATATAGACGTGCATAAAAGGAT 1418
Query 1321 TCGTGTGGCGACTGTAGCAGCAGTGGCCATTTCATCATTAGCGAGAGCACCTTCAGGTCG 1380
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1419 TCGTGTGGCAACTGTAGCAGCAGTGGCCATTTCATCATTAGCGAGAGCACCTTCAGGCCG 1478
Query 1381 GAGGTTACTTGGCC-AAAAGGGATCTGTAAGTGGAGGACCAAAAACGCCAAAGACATCTT 1439
|||||||||||||| |||||| | | ||||||||||||||||||||||| ||||||
Sbjct 1479 GAGGTTACTTGGCCCAAAAGG-A-----A-GTGGAGGACCAAAAACGCCAAAGGCATCTT 1531
Query 1440 CTACTCCCAAACCGGACGATAAACTGATCGGAACCATGACCGGTCCTCCTCAAGGGAACA 1499
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1532 CTACTCCCAAACCGGATGATAAACTGATGGGAACCATGACCGGTCCTCCTCAAGGAAACA 1591
Query 1500 ACTGATGATTTCAGGTGGGTGTTGAGTTTTTGCTTGAGATGTGAGAAATAAATAAGGTTT 1559
|||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1592 ACTGATTATTTAAGGTGGGTGTTGAGTTTTTGCTTGAGATGTGAAAAATAAATAAGGTTT 1651
Query 1560 TGAAACTTAGATCAATTTAGAGCACCTTCTCT-TT-CACTACTTAACTACATATGTATAA 1617
|||||||||||||| ||||||||||||||||| || |||| |||||||||||||||||||
Sbjct 1652 TGAAACTTAGATCAGTTTAGAGCACCTTCTCTCTTTCACTGCTTAACTACATATGTATAA 1711
Query 1618 TACATACATGTAGATATAATCTACTATTCTTTCAA 1652
||||| || |||||||||||| ||||||||||
Sbjct 1712 TACAT----GTCGATATAATCTACAATTCTTTCAA 1742
> AT4G14240.1 | Symbols: | CBS domain-containing protein with
a domain of unknown function (DUF21) | chr4:8204347-8207408
REVERSE LENGTH=1985
Length=1985
Score = 1351 bits (731), Expect = 0.0
Identities = 1203/1423 (85%), Gaps = 63/1423 (4%)
Strand=Plus/Plus
Query 11 ATGCATCCGATTAATGCGGTGGTTGCGGCGAGGATGTTGGCCGGAATCAGTCAATCTAAC 70
||||||| |||||||||||||| ||||||||||| || |||||||| | |||||||||
Sbjct 136 ATGCATCTGATTAATGCGGTGGCGGCGGCGAGGATTTTATCCGGAATCGGACAATCTAAC 195
Query 71 -G-CCTTA-GAAAGCGAAGCAATCCCCTTTGGATCGCTTGAGTGGATCATTTACGCCGGA 127
| | | | | | ||||| || || ||||||||| |||||||||||| ||||||||||
Sbjct 196 GGTAATAACGGAGGAGAAGCGATTCCGTTTGGATCGTTTGAGTGGATCACTTACGCCGGA 255
Query 128 ATCTCTTGTTTCCTTGTTCTCTTCGCCGGAATTATGTCTGGTCTCACTTTAGGG-CTTAT 186
|| ||||||||||| || ||||||||||| |||||||||||||| ||||| ||| |||||
Sbjct 256 ATATCTTGTTTCCTCGTACTCTTCGCCGGGATTATGTCTGGTCTTACTTT-GGGACTTAT 314
Query 187 GTCTCTCGGTCTCGTCGAGCTCGAGATTCTTCAACATAGTGGTACTCCAAAAGAGAAGAA 246
|||||| ||||| |||||||| ||||||||||||| |||||||||||| || ||||||||
Sbjct 315 GTCTCTTGGTCTTGTCGAGCTTGAGATTCTTCAACGTAGTGGTACTCCTAATGAGAAGAA 374
Query 247 ACAATCTGCTGCGATTTTTCCGGTTGTTCAGAAACAGCATCAGCTTTTAGTGACTCTGCT 306
|||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 375 ACAAGCCGCTGCGATTTTTCCGGTTGTTCAGAAACAGCATCAGCTTTTAGTGACACTGCT 434
Query 307 TCTGTTTAATGC-ACTTGCTATGGAGGGGCTTCCTATATACTTGGATAAGATATTCAATG 365
||||| |||||| | | ||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 435 TCTGTGTAATGCTA-TGGCTATGGAGGGGCTTCCTATATATTTGGATAAGTTATTCAATG 493
Query 366 AGTATGTTGCTATTATTCTATCGGTCACTTTCGTGCTAT--TTGTCGGAGAGGTTATTCC 423
| || ||||| |||||||| || ||||| ||||| || | || |||| |||||||||||
Sbjct 494 AATACGTTGCGATTATTCTTTCTGTCACATTCGTTCT-TGCTT-TCGGTGAGGTTATTCC 551
Query 424 TCAAGCTATATGTACTAGATATGGACTAGCAGTGGGAGCTAATTTGGTTTGGCTTGTCCG 483
|||||| ||||| ||||| |||||||| || || ||||| ||||| || |||||||||||
Sbjct 552 TCAAGCGATATGCACTAGGTATGGACTCGCGGTTGGAGCGAATTTTGTCTGGCTTGTCCG 611
Query 484 TATCTTGATGG-T-TCTGTCTTACCCGATAT-CTTTTCCTATTG-CAAAGATGTTGGATT 539
|| || ||| | |||| || | ||||| | | ||||| |||| ||| ||| || ||||
Sbjct 612 CATTTTAATGACTCTCTG-CT-ATCCGAT-TGCCTTTCCCATTGGCAA-GATTTTAGATT 667
Query 540 GGGTATTGGGACACAATGACCCTTTGTTTAGACGGGCTCAGTTGAAAGCTCTTGTGTCCA 599
||| ||||||||||||| |||| ||||| ||||||||||||||||||||||| ||||
Sbjct 668 TGGTGCTGGGACACAATGATGCTTTATTTAGGCGGGCTCAGTTGAAAGCTCTTGTATCCA 727
Query 600 TTCATGGTGAAGCTGCTGGAAAGGGAGGTGAACTTACACATGATGAGACCACAATCATAA 659
|||| | ||| ||||| ||||||||||| ||||||||||||||||| |||||||| |
Sbjct 728 TTCACAGCCAAGAGGCTGGTAAGGGAGGTGAGCTTACACATGATGAGACGACAATCATTA 787
Query 660 GTGGAGCACTTGATTTGACGGAGAAGACTGCTCAAGAAGCCATGACTCCTATTGAATCAA 719
||||||| ||||||||||| ||||||||||| |||||||||||||| || ||||| || |
Sbjct 788 GTGGAGCTCTTGATTTGACTGAGAAGACTGCACAAGAAGCCATGACACCAATTGAGTCTA 847
Query 720 CCTTTTCCTTGGATGTAAATTCAAAGTTGGATAGGGAAGCTATGGATAAGATTCAAGCAC 779
|||| |||||||||||||||||||| |||||| |||||||||||| ||||||| ||||
Sbjct 848 CCTTCTCCTTGGATGTAAATTCAAAATTGGATTGGGAAGCTATGGGGAAGATTCTGGCAC 907
Query 780 GAGGTCACAGCCGCATTCCTGTCTACTCTGAGAATCC-AAAGAATGTTATTGGACTTCTC 838
|||| || |||||| ||||||||||||||| |||||| ||| || ||||| |||||||||
Sbjct 908 GAGGCCATAGCCGCGTTCCTGTCTACTCTGGGAATCCGAAA-AACGTTATCGGACTTCTC 966
Query 839 TTGGTGAAGAGTCTACTTACAGTTCGCCCTGAAACAGGGACCCTTGTCAGTGCAGTTGGT 898
|||||||||||||| |||||||||||||||||||||| |||||||||||| |||||| ||
Sbjct 967 TTGGTGAAGAGTCTTCTTACAGTTCGCCCTGAAACAGAGACCCTTGTCAGCGCAGTTTGT 1026
Query 899 ATACGCCGAATTCCAAGGGTTCCAGCTGATATGCCTCTGTATGATATACTAAATGAGTTT 958
|||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1027 ATACGCCGGATTCCAAGGGTTCCAGCTGATATGCCTCTCTATGATATACTGAATGAGTTT 1086
Query 959 CAAAAAGGGA-GCAGTCACATGGCAGCAGTTGTGAAGGTTAACGGGAAAAGCAAAGGTC- 1016
||||| |||| ||||||||||||| ||||||||||||||||| ||||||||||||| ||
Sbjct 1087 CAAAA-GGGAAGCAGTCACATGGCTGCAGTTGTGAAGGTTAAGGGGAAAAGCAAAG-TCC 1144
Query 1017 -ATCCTTTAACTTTGCTTGAAGAAAATAGCAG-TGAAAGCAACGTCTCAAGTAATAACTC 1074
| |||| |||||||||||||||| | | | | ||||||||| | | | |||
Sbjct 1145 CA-CCTTCAACTTTGCTTGAAGAACACA-CTGATGAAAGCAA--T-----G-A----CTC 1190
Query 1075 CGAGTTGACTGCACCTCTGTTACTAAAGCGAGAAGGAAACCACGACAGTGTCATTGTCCG 1134
||| |||||||||||| |||||||||| ||||| |||||||| |||| ||||||||||
Sbjct 1191 CGACTTGACTGCACCTTTGTTACTAAAACGAGAGGGAAACCATGACAATGTCATTGTCA- 1249
Query 1135 CA-TCGACAAGGCTAATGGACAATCGTTCA--C----CAGCGAG-GCCGG-CAGACACGG 1185
|| |||||||||||||||||||||| ||| | || |||| | || | |||||
Sbjct 1250 CAATCGACAAGGCTAATGGACAATCTTTCTTTCAAAACAACGAGAGT-GGACCT-CACGG 1307
Query 1186 ATTCTCGCATACTTCAGAGGAGATTGAAGATGGAGACGTAATTGGTATCATCACATTGGA 1245
|| || ||||||||||||| || || ||||| || ||||||||||||||||| || ||
Sbjct 1308 GTTTTCACATACTTCAGAGGCTATCGAGGATGGTGAGGTAATTGGTATCATCACTTTAGA 1367
Query 1246 AGATGTGTTTGAAGAACTTTTGCAGGAGGAGATTGTGGATGAAACAGATGAGTATATAGA 1305
|||||| ||||||||||||||||| || ||||||||||||||||| ||||| ||| | ||
Sbjct 1368 AGATGTCTTTGAAGAACTTTTGCAAGAAGAGATTGTGGATGAAACTGATGAATATGTTGA 1427
Query 1306 CGTTCATAAAAGGATTCGTGTGGCGACTGTAGCAGCAG-TGGCCATTTCATCATTAGCGA 1364
||| |||||||||||||| || || | | |||||| | || | || ||||| ||||||
Sbjct 1428 CGTACATAAAAGGATTCGAGTAGC-A--GCAGCAGCGGCTG-C--TT-CATCAATAGCGA 1480
Query 1365 GAGCACCTTCAGGTCGGAGGTTACTTG-GCCAAAAGGGATCTG 1406
|||| |||||| | |||| ||| |||| || |||||||| |||
Sbjct 1481 GAGCTCCTTCAAGCCGGAAGTTGCTTGCGC-AAAAGGGAACTG 1522
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81626086170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5