BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493488
Length=1483
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14220.1 | Symbols: RHF1A | RING-H2 group F1A | chr4:8195881... 2193 0.0
> AT4G14220.1 | Symbols: RHF1A | RING-H2 group F1A | chr4:8195881-8198562
FORWARD LENGTH=1569
Length=1569
Score = 2193 bits (1187), Expect = 0.0
Identities = 1406/1506 (93%), Gaps = 37/1506 (2%)
Strand=Plus/Plus
Query 2 tcttcttcttcttcttcctcttcttcttcaacctcttaaatctcaaattctctcaatcct 61
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct 28 TCTTCTTCTTCTTCTTCTTCTTCTTCTTCAACCTCTTAAATCTCAAA--ATCTCAATCAT 85
Query 62 c-agcttcttcttcttcttcttcttcttcttccatcttcgcttcAACAACAATGTCTAAT 120
| |||||| || ||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 86 CAAGCTTC-TC--CTTCTTCTTCTTC-T-TTCCATCTTCGCTTCAACAACAATGTCTAAT 140
Query 121 TTCACTTATACTTCTGCCTTCAACTTATCCG---ACTCCCCTTTTGATTCCGCCA----- 172
||||||||||| ||||| ||||||||||||| ||||||||||| || ||||||
Sbjct 141 TTCACTTATACATCTGCTTTCAACTTATCCGACAACTCCCCTTTTAATCCCGCCATTGGT 200
Query 173 --TT-G-CTTCTTCTTCCTCCGC-CTTCGTCGTACCTTCCGATGATG---AT--T-CCGA 221
|| | |||||||||||||||| | |||||||| |||||||||||| || | ||||
Sbjct 201 TCTTCGTCTTCTTCTTCCTCCGCGC-TCGTCGTAGCTTCCGATGATGATAATAATACCGA 259
Query 222 CGACGCTTGTAGCATCTGTCTCGAGCCTTTCACTCTCCAGGATCCTTCCACTGTCACCAG 281
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 260 TGATGCTTGTAGCATCTGTCTCGAGCCTTTCACCCTCCAGGATCCTTCCACTGTCACCAG 319
Query 282 TTGCAAACATGAATATCATCTTCAGTGCATCATTGAATGGTCACAGAGAAGCAAAGAGTG 341
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 320 CTGCAAACATGAATATCACCTTCAGTGCATCATTGAATGGTCACAGAGAAGCAAAGAGTG 379
Query 342 TCCTATTTGCTGGCAATTGTTTGTTTTGAGAGATCCTGCTAGCCAAGAGCTTTT-GTCTG 400
||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||
Sbjct 380 TCCTATTTGCTGGCAATTGTTTGTTTTGAGAGACCCTGCTAGCCAAGAGCTTTTAG-CTG 438
Query 401 CTGTGGAAAAGGAAAGACTTTTGAAAACCAGGAACATTTCTTCATCATCTCCAATATCTA 460
|||||||||||||||||||||||||||||||||| || |||||||| |||||||| ||||
Sbjct 439 CTGTGGAAAAGGAAAGACTTTTGAAAACCAGGAATATATCTTCATCCTCTCCAATCTCTA 498
Query 461 TTCATCACTCTCAGGAGGATTTTCACTCTGAGGAGGAGGAATCGCAGTTTAGCAGCTTTG 520
||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 499 TTCATCACTCTCATGACGATTTTCACTCTGAGGAGGAGGAATCACAGTTTAGCAGCTTTG 558
Query 521 ATGAACAGTTCTTGAGGCATCTCACTGAAGCTGCCCATAGACGTTGTTTGCTTCGTAGAA 580
||||||| |||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct 559 ATGAACAATTCTTGAGGCATCTTACTGAAGCTGCACATAGACGTTGTTTGCTTCGCAGAA 618
Query 581 GGGATGGTCAAATATCCTCAAGTCTTGTTTCGTCCAGTGATCCCACTATGATTCATCCTA 640
||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||
Sbjct 619 GGGATGGTCAAATATCCTCTAGTCTTGTTTCGTCCAGCGATCCCACTACGATTCATCCTA 678
Query 641 CTGATTTGGTCAATCTTTATCGTATCTCTGCTATTTCCCATGTTGAACATCAAAACGCAA 700
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 679 CTGATTTGGTCAATCTTTATCGTCTCTCTGCTATTTCCCATGTTGAACATCAAAACTCAA 738
Query 701 ACCCTTGTCCAAGTCCTGGCTCAATGAC-CGCATCTCCTGTCTCTGGCCACTCTTCCGTT 759
|||||||||||||||||||||||||||| | ||||||| |||||||| || |||||| ||
Sbjct 739 ACCCTTGTCCAAGTCCTGGCTCAATGACTC-CATCTCCCGTCTCTGGTCATTCTTCCATT 797
Query 760 CCTGCAGATAGCAACAACGCATCCAGAATCTCTCCTGGCCCGTCTCCGTCTCGTTCATCT 819
|||||||||||||| |||| ||||||||||||||||||||| ||||| ||||||||||||
Sbjct 798 CCTGCAGATAGCAATAACGGATCCAGAATCTCTCCTGGCCCTTCTCCATCTCGTTCATCT 857
Query 820 CAAAGTCC-AGATCCACCTGAAGCATCCTCTCTTCCTGAAGCCATTAAATCCAAACTAGC 878
|||||||| | || |||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 858 CAAAGTCCAAAAT-CACCTGAAGCATCCTCGCTTCCGGAAGCCATTAAATCGAAACTAGC 916
Query 879 TGCTGCTTCCGCAAAGTACAAAGAATCGATCTCTAAAAGTAAACAAGGTCTTAAAGAGAA 938
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 917 TGCTGCTTCTGCAAAGTACAAGGAATCGATCTCTAAAAGTAAACAAGGTCTTAAAGAGAA 976
Query 939 GCTACTTGCTCGCAATAACTCAGTGAAAGAATTGAGCAAAGGAGTACAACGTGAAATGAA 998
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 977 GCTACTTGCTCGCAATAACTCAGTGAAAGAATTGAGCAAAGGAGTGCAACGTGAGATGAA 1036
Query 999 TGCAGGAATAGCTGGTGTTGCACGCATGATCGAACGCTTGGATTTTTCTTCAAAACGTTT 1058
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1037 TGCAGGAATAGCTGGTGTTGCACGAATGATCGAACGCATGGATTTTTCTTCAAAACGTTT 1096
Query 1059 TGGAGGGTCTGGTCATGTATCAACCTCCACTGCTACTGCTTCTGGATTCAATTTCTCATT 1118
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1097 TGGAGGGTCTGCTCATGTATCAACCTCCACTGCTACTGCTTCTGGATTCAATTTCTCATT 1156
Query 1119 CAAAGGGAAGCGTGTAGAAGCCAATTCTAAGTCTAGCAACAATGGAGACAAAACCGAACC 1178
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1157 CAAAGGGAAACGTGTAGAAGCCAATTCTAAGTCTAACAACAATGGAGACAAAACCGAACC 1216
Query 1179 CCAAAAGCTGCAGGGAGGAGAAACTTGCTGAGGCAATCAGATAAATGGAGAGAGGCCTTT 1238
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1217 CCAAAAGCTGCAGGGAGGAGAAACGTGCTGAGGCAATCAGAAAAATGGAGAGAGGCCTTT 1276
Query 1239 AATGCAAGCGATGTACGTTTCCATTGAATCAACTTACCCGTTGGTCTTCGCATCCTGCAT 1298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 AATGCAAGCGATGTACGTTTCCATTGAATCAACTTACCCGTTGGTCTTCGCATCCTGCAT 1336
Query 1299 TGTTCCAGAGCTCACGGTCTTGTCTCTCTTCTCTCTGTTACTTTTGCGATGAGTACTTTT 1358
||||| |||||||||||||| ||||||| |||||||||||| ||||||||| ||||||||
Sbjct 1337 TGTTC-AGAGCTCACGGTCTCGTCTCTCGTCTCTCTGTTACCTTTGCGATGCGTACTTTT 1395
Query 1359 AGAAGGCTAAAATAAGCAACTGAGTAATCTTTTTATTACTCGATTTTCG-CGGAGTCAAA 1417
||| |||||||||||||||||||||||| ||||||||||||||||| | ||||| ||||
Sbjct 1396 AGATGGCTAAAATAAGCAACTGAGTAATAATTTTATTACTCGATTTT-GACGGAGCCAAA 1454
Query 1418 ACTATAATATTTATTAATTTCAAAGGATAATGTTCTATGTTTTTTCACTAAGAATTGGAT 1477
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1455 ACTATAATATTTATTAATTTCAAAGGATAATGTTTTATGTTTTTTCACTAAGAATTGGAT 1514
Query 1478 TAGTCC 1483
|||||
Sbjct 1515 CAGTCC 1520
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73142194065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5