BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493490
Length=2082
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14210.1 | Symbols: PDS3, PDS, PDE226 | phytoene desaturase ... 3229 0.0
> AT4G14210.1 | Symbols: PDS3, PDS, PDE226 | phytoene desaturase
3 | chr4:8190212-8195265 REVERSE LENGTH=2213
Length=2213
Score = 3229 bits (1748), Expect = 0.0
Identities = 1994/2107 (95%), Gaps = 40/2107 (2%)
Strand=Plus/Plus
Query 1 ACATATTTCGTAAGCAACAAAAGAGCTTGGTCTGAAAACCAACCAAGACCATATGATGGG 60
|||| ||||||||||||||||||||||||||||||||||||| ||||||| || |||||
Sbjct 116 ACATGTTTCGTAAGCAACAAAAGAGCTTGGTCTGAAAACCAAACAAGACC--AT-ATGGG 172
Query 61 CACTCAAAGCCTCCATTTTGTTATCGGCTACTTCCACTAGCTTCCTTCTTCTCTGCGTCT 120
||||| || ||||||||||||||||||||||||||||||| |||| |||| ||||| |
Sbjct 173 CACTCGAATACTCCATTTTGTTATCGGCTACTTCCACTAGCCTCCTCCTTCGCTGCG--T 230
Query 121 CCTCCTGGTTCTCTACTTTACGATTGCTCACTAGATTCATTGAAGCAGTTGTGACTTAAG 180
|||||| |||||||||| |||||| ||| |||||||||||||||||||||||| |||||
Sbjct 231 -CTCCTGTTTCTCTACTTCACGATTACTCGCTAGATTCATTGAAGCAGTTGTGAGTTAAG 289
Query 181 GTGGAG-AAATGGTTGTGTTTGGGAATGTTTCTGCGGCGAATTTGCCTTATCAAAACGGG 239
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 TTGGAGAAAATGGTTGTGTTTGGGAATGTTTCTGCGGCGAATTTGCCTTATCAAAACGGG 349
Query 240 TTTTTGGAGGCACTTTCTTCATCTGGAGGTAT-TGAATTGATGGGACACAGCTTTAGGGT 298
||||||||||||| | ||||||||||||| | |||| | |||||||| |||||||||||
Sbjct 350 TTTTTGGAGGCAC--T-TTCATCTGGAGGT-TGTGAACTAATGGGACATAGCTTTAGGGT 405
Query 299 TCCGACTTTTCAAGCACTTAAGACAAGAACAAGGAGGAGAAGTAGTGCTGGTCCTTTGCA 358
||| |||| |||||| ||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 406 TCCCACTTCTCAAGCGCTTAAGACAAGAACAAGGAGGAGGAGTACTGCTGGTCCTTTGCA 465
Query 359 GGTGGTTTGTGTGGATATTCCAAGGCCAGAGCTAGAGAATACTGTCAATTTCTTGGAAGC 418
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 466 GGTAGTTTGTGTGGATATTCCAAGGCCAGAGCTAGAGAACACTGTCAATTTCTTGGAAGC 525
Query 419 TGCTAGTTTATCTGCATCTTTCCGTAGTGCTCCTCGTCCTGCAAAGCCTTTAAAAGTTGT 478
|||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 526 TGCTAGTTTATCTGCATCCTTCCGTAGTGCTCCTCGTCCTGCTAAGCCTTTGAAAGTTGT 585
Query 479 AATTGCTGGTGCTGGATTGGCTGGATTGTCAACTGCAAAGTACCTGGCTGATGCAGGCCA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 AATTGCTGGTGCTGGATTGGCTGGATTGTCAACTGCAAAGTACCTGGCTGATGCAGGCCA 645
Query 539 CAAACCTCTGTTACTTGAAGCAAGAGATGTTCTTGGTGGAAAGATAGCTGCATGGAAGGA 598
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 CAAACCTCTGTTGCTTGAAGCAAGAGATGTTCTTGGTGGAAAGATAGCTGCATGGAAGGA 705
Query 599 TGAAGATGGGGACTGGTATGAAACTGGTTTACATATATTCTTCGGTGCTTATCCAAATGT 658
||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 706 TGAAGATGGGGACTGGTATGAGACTGGTTTACATATTTTCTTCGGTGCTTATCCGAATGT 765
Query 659 GCAGAACTTATTTGGAGAACTTGGGATCAATGATCGGTTGCAGTGGAAGGAACACTCCAT 718
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 GCAGAATTTATTTGGAGAACTTGGGATCAATGATCGGTTGCAGTGGAAGGAACACTCCAT 825
Query 719 GATTTTCGCTATGCCAAGTAAACCTGGAGAGTTTAGTAGATTTGACTTCCCAGATGTCCT 778
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 826 GATTTTTGCTATGCCAAGTAAACCTGGAGAATTTAGTAGATTTGACTTCCCAGATGTCCT 885
Query 779 ACCAGCACCCTTAAACGGTATTTGGGCTATTTTGCGGAACAACGAGATGCTGACATGGCC 838
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 ACCAGCACCCTTAAATGGTATTTGGGCTATTTTGCGGAACAACGAGATGCTGACATGGCC 945
Query 839 AGAGAAAATAAAGTTTGCTATTGGACTTTTGCCAGCCATGGTCGGCGGCCAGGCTTATGT 898
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 946 AGAGAAAATAAAGTTTGCTATTGGACTTTTGCCAGCCATGGTCGGCGGTCAGGCTTATGT 1005
Query 899 TGAAGCCCAAGATGGTTTATCAGTCAAAGAATGGATGGAAAAGCAGGGAGTACCTGAGCG 958
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 TGAGGCCCAAGATGGTTTATCAGTCAAAGAATGGATGGAAAAGCAGGGAGTACCTGAGCG 1065
Query 959 TGTGACTGACGAGGTGTTTATTGCCATGTCAAAGGCGCTAAACTTTATCAACCCTGATGA 1018
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1066 CGTGACCGACGAGGTGTTTATTGCCATGTCAAAGGCGCTAAACTTTATAAACCCTGATGA 1125
Query 1019 ACTGTCAATGCAATGCATTTTGATAGCTTTGAACCGGTTTCTTCAGGAAAAACATGGTTC 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 ACTGTCAATGCAATGCATTTTGATAGCTTTGAACCGGTTTCTTCAGGAAAAACATGGTTC 1185
Query 1079 CAAGATGGCATTCTTGGATGGTAATCCTCCGGAAAGGCTTTGTATGCCAATAGTGGATCA 1138
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1186 CAAGATGGCATTCTTGGATGGTAATCCTCCGGAAAGGCTTTGTATGCCAGTAGTGGATCA 1245
Query 1139 TATTCGATCACTAGGTGGGGAAGTGCAACTTAATTCTAGGATAAAGAAAATTGAGCTCAA 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 TATTCGATCACTAGGTGGGGAAGTGCAACTTAATTCTAGGATAAAGAAAATTGAGCTCAA 1305
Query 1199 TAACGATGGCACGGTTAAGAGTTTCTTACTAACTAACGGAAGCACTGTCGAAGGAGACGC 1258
| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1306 TGACGATGGCACGGTTAAGAGTTTCTTACTCACTAATGGAAGCACTGTCGAAGGAGACGC 1365
Query 1259 TTATGTGTTTGCCGCTCCAGTCGATATCCTGAAGCTCCTTTTACCAGATCCCTGGAAAGA 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 TTATGTGTTTGCCGCTCCAGTCGATATCCTGAAGCTCCTTTTACCAGATCCCTGGAAAGA 1425
Query 1319 AATACCGTACTTCAAGAAATTGGATAAATTAGTTGGAGTGCCAGTTATTAATGTTCATAT 1378
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1426 AATACCGTACTTCAAGAAATTGGATAAATTAGTTGGAGTACCAGTTATTAATGTTCATAT 1485
Query 1379 ATGGTTTGATCGAAAACTGAAGAACACATATGATCACCTACTCTTTAGCAGAAGTAACCT 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1486 ATGGTTTGATCGAAAACTGAAGAACACATATGATCACCTACTCTTTAGCAGAAGTAACCT 1545
Query 1439 TCTTAGCGTGTATGCCGACATGTCCTTAACTTGTAAGGAATATTACGATCCTAACCGGTC 1498
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546 TCTGAGCGTGTATGCCGACATGTCCTTAACTTGTAAGGAATATTACGATCCTAACCGGTC 1605
Query 1499 GATGCTGGAGCTAGTATTTGCACCAGCAGAGGAATGGATATCACGAACTGACTCTGACAT 1558
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1606 AATGCTGGAGCTAGTATTTGCACCAGCAGAGGAATGGATATCACGGACTGATTCTGACAT 1665
Query 1559 CATAGATGCAACAATGAAAGAACTTGAGAAACTCTTCCCTGATGAAATCTCAGCTGACCA 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1666 CATAGATGCAACAATGAAAGAACTTGAGAAACTCTTCCCTGATGAAATCTCAGCTGACCA 1725
Query 1619 AAGCAAAGCTAAAATTCTGAAGTACCATGTCGTTAAAACTCCAAGGTCTGTGTATAAGAC 1678
|||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 1726 AAGCAAAGCTAAAATTCTGAAGTACCATGTCGTTAAGACTCCAAGATCTGTGTACAAGAC 1785
Query 1679 CATCCCAAACTGTGAACCATGTCGTCCTCTACAGAGATCACCTATTCAAGGGTTCTACTT 1738
||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||
Sbjct 1786 CATCCCAAACTGTGAACCATGTCGTCCTCTACAAAGATCACCTATTGAAGGATTCTACTT 1845
Query 1739 AGCTGGAGATTACACAAAACAGAAGTACTTAGCTTCCATGGAAGGCGCGGTTCTCTCTGG 1798
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1846 AGCTGGAGATTACACAAAACAGAAGTACTTAGCTTCCATGGAAGGCGCTGTCCTCTCTGG 1905
Query 1799 CAAATTCTGCTCACAGTCTATTGTGCAGGATTACGAGCTACTGGCTGCATCTGGATCGAG 1858
|||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| | ||
Sbjct 1906 CAAATTCTGCTCTCAGTCTATTGTTCAGGATTACGAGCTACTGGCTGCGTCTGGACCAAG 1965
Query 1859 AAAGTTATCGGAGGCAACAGTatcatcatcatcatcatGAGAGAGGACAAAGCTTAAAGA 1918
|||||| ||||||||||||||||||||||||| | || |||||||||| ||||||||
Sbjct 1966 AAAGTTGTCGGAGGCAACAGTATCATCATCATGA----GA-AGAGGACAAAACTTAAAGA 2020
Query 1919 TGATTT-CTTGTAAGCATTATTATTTGTGTATAAATCTCACTGCAATCCAAAATTGACCC 1977
|||||| ||||||||||||||||||||||||||||||||| ||||||||||| || |||
Sbjct 2021 TGATTTGCTTGTAAGCATTATTATTTGTGTATAAATCTCATTGCAATCCAAACTTAACCT 2080
Query 1978 TACTCTCTTCAGTAAATGAATCTCACAAATTTGACATCTC---TTT-----AA----A-A 2024
||||||||||||||||||||||||||| |||||||||||| ||| || | |
Sbjct 2081 TACTCTCTTCAGTAAATGAATCTCACAGATTTGACATCTCACGTTTCTGTCAATTTTATA 2140
Query 2025 G-----A----GTAATTACTGTCGAGCTTTTGTAATCATAGTGATTTATCATTATGTCTC 2075
| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2141 ATTTTTAAAAAGTAATTACTGTCGACCTTTTGTAATCATAGTGATTTATCATTATGTCTC 2200
Query 2076 TCTCTTT 2082
||| |||
Sbjct 2201 TCTTTTT 2207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103212320520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5