BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493491 Length=1559 Score E Sequences producing significant alignments: (Bits) Value AT4G14190.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2355 0.0 > AT4G14190.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:8183544-8185187 REVERSE LENGTH=1563 Length=1563 Score = 2355 bits (1275), Expect = 0.0 Identities = 1471/1565 (94%), Gaps = 15/1565 (1%) Strand=Plus/Plus Query 1 TGTAATGGAGAATCTGACGACGGCGCAATTTCTCCACAGAGCGACGCTACAGAAGAATCC 60 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || Sbjct 4 TGTAATGGAGAATCTGACGACGGCGCAATTTCTCCACAGAGCGACGCTACTGAAGAAGCC 63 Query 61 ACCTCCTCCACCATGGAATTTGAACTCAAGCTTTCTCACTTCCATTTCCTATTCGATACC 120 ||||||||| ||||||||||||||||||||||||||||| || | |||||||||||||| Sbjct 64 ACCTCCTCCTCCATGGAATTTGAACTCAAGCTTTCTCACATCTACCTCCTATTCGATACC 123 Query 121 TA-AACTCTCTTCTCTCCGCCG-TGCTTTGCCCTTGTCTATCAATGGCGACGCGTCGCAG 178 || | || |||||||||||||| | ||||||||||||||||||||||||||||| | ||| Sbjct 124 TAGACCT-TCTTCTCTCCGCCGCT-CTTTGCCCTTGTCTATCAATGGCGACGCGACACAG 181 Query 179 TCCACCTCTCTTATCCACCACCACCACCGGTTTCTCAGTTCATTGCCACGGCGGCTCGA- 237 ||||||||| | | | |||||||||||||||||||||||||||| ||||||||||| | Sbjct 182 CCCACCTCTC-T-T-CTCCACCACCACCGGTTTCTCAGTTCATTGACACGGCGGCTC-AG 237 Query 238 AATTCCCGGTTCATGTCCTCTACGG-TTGCTTCAGGAAGATGGAGATTGGAGCAAAGACC 296 || ||||||| |||||||||||| || |||||||| |||||||||||||||||||||| Sbjct 238 TCTTTCCGGTTCGTGTCCTCTACGGCTT-CTTCAGGAGGATGGAGATTGGAGCAAAGACC 296 Query 297 ATTTCTGGGCTGTTATTCGTTTTCTCCGTCACTCCTCAAGACTCCACGAGATTCTTCCTG 356 |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 297 ATTTCTGGGCCGTTATTCGTTTTCTCCGTCAGTCCTCAAGACTCCACGAGATTCTTCCTG 356 Query 357 TTTTTGATGCTTGGAAGAATCTTGAGCCTTCACGAATAAGCGAG-GCTAATTACGAGAGG 415 |||||||| | |||||||||||||||||||| |||||||| ||| | |||||||| ||| Sbjct 357 TTTTTGATACGTGGAAGAATCTTGAGCCTTCGCGAATAAGTGAGAAC-AATTACGAAAGG 415 Query 416 GTTATAAGGCTTTTATGTGAGGAAAAATCGATGAATGAAGCAATTCGAGCTTTTCGCGGT 475 |||||||| |||||||||||||||||||||||| ||||||||||||||||||||| || Sbjct 416 ATTATAAGGTTTTTATGTGAGGAAAAATCGATGAGTGAAGCAATTCGAGCTTTTCGTAGT 475 Query 476 ATGATTGATGATCATGAGCTAAGTCCGTCTTTAGAAATATATAATTCAATCATCCATGGT 535 |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| || Sbjct 476 ATGATTGATGATCATGAGCTAAGTCCGTCTTTAGAAATCTATAATTCAATCATACATAGT 535 Query 536 TATGCTGATGAAGGGAAGTTTGAGGAAGCTATGTTCTATTTGAATCATATGAAAGAGAAT 595 ||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 536 TATGCTGATGATGGGAAGTTTGAGGAAGCTATGTTCTACTTGAATCATATGAAGGAGAAT 595 Query 596 GGTCTGTTACCGATAACCGAGACATACGATGGCTTGATTGAAGCATATGGTAAATGGAAA 655 ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 596 GGTCTGTTACCGATAACGGAGACATACGATGGATTGATTGAAGCATATGGTAAATGGAAA 655 Query 656 ATGTATGATGAGATTGTTTTGTGTCTCAAGAGAATGGAGTCTGAAGGTTGTGTGCGTGAT 715 |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||| Sbjct 656 ATGTATGATGAGATTGTTTTGTGTCTTAAGAGAATGGAATCTGATGGTTGTGTGCGTGAT 715 Query 716 CATATTACTTATAATCTACTCATACGCGAGTTTTCCCGAGGAGGGTTGCTTAAGAGAATG 775 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 716 CATGTTACTTATAATCTACTCATACGCGAGTTTTCCCGAGGAGGGTTGCTTAAGAGAATG 775 Query 776 GAGCAAATGTATCAGAGTTTGATGTCGAGGAAGATGACTCTCGAGCCTTCTACGTTGTTG 835 ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| Sbjct 776 GAGCAAATGTATCAGAGTTTGATGTCGAGGAAGATGACTTTGGAGCCTTCTACGTTGTTG 835 Query 836 TCCATGCTTGAAGCTTATGCAGAGTTTGGGCTAATTGAAAAGATGGAGGAAACGTGTAAC 895 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 836 TCTATGCTTGAAGCTTATGCAGAGTTTGGGCTAATTGAAAAGATGGAGGAAACGTGTAAC 895 Query 896 AAGATTATAAGGTTTGGGATCTCTCTGGATGAGGGTTTAGTTAGAAAATTAGCTAATGTT 955 |||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||| Sbjct 896 AAGATTATAAGGTTTGGGATTTCTTTGGATGAGGGTTTAGTTAGGAAATTAGCTAATGTT 955 Query 956 TACATTGATAACCTCATGTTTTCGAGGCTTGATGATTTGGGTCGTGGCATTTCTTCCTCT 1015 || ||||| ||||||||||| ||||| ||||||||||||||||||||||||||| | ||| Sbjct 956 TATATTGAAAACCTCATGTTCTCGAGACTTGATGATTTGGGTCGTGGCATTTCTGCTTCT 1015 Query 1016 AGAACCCGTAGGACCGATCTGGCTTGGTGTCTCAGGCTTCTGTGTCATGCCCGACTTGTG 1075 |||||||||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct 1016 AGAACCCGTAGGACTGAACTTGCTTGGTGTCTCAGGCTTCTGTGTCATGCCCGACTTGTG 1075 Query 1076 AGTCGGAAAGGTTTGGATTATGTTGTTAAAGAGATGGAAGAAGCTAGAGTTCCTTGGAAT 1135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1076 AGTCGGAAAGGTTTGGATTATGTTGTTAAAGAGATGGAAGAAGCTAGAGTTCCTTGGAAT 1135 Query 1136 ACAACTTTTGCCAATATCGCACTTTTAGCTTACTCAAAGATGGGAGATTTTAAGAGCATT 1195 |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 1136 ACAACTTTTGCCAATATCGCACTTTTAGCTTACTCAAAGATGGGAGATTTCACGAGCATT 1195 Query 1196 GAGCTGTTACTCTCTGAGCTACGGACAAAACATGTGAAGCTTGATCTTGTAACTGTAGGG 1255 |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct 1196 GAGCTGTTACTCTCTGAGCTCCGGATAAAACATGTGAAGCTTGATCTTGTAACTGTAGGA 1255 Query 1256 ATTATCTTCGACTTGAGCGAAGCTGGGTTCGACGGTACTGGAGTTTTCATGACTTGGAAA 1315 ||| |||| |||||||| |||||| |||||||||| ||||||||||| |||||||||||| Sbjct 1256 ATTGTCTTTGACTTGAGTGAAGCTAGGTTCGACGGCACTGGAGTTTTTATGACTTGGAAA 1315 Query 1316 AAGATTGGGTTTCTTGATAAGCCTGTGGAAATGAAGACAGACCCTTTGGTTCATGCTGCT 1375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1316 AAGATTGGGTTTCTTGATAAGCCTGTGGAAATGAAGACAGACCCTTTGGTTCATGCTGCT 1375 Query 1376 TTTGGTAAGGGGCAGTTTCTTAAGAGTTGTGAAGAAGTGAAGAACCAGTCTCTTGGTATG 1435 |||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||| | Sbjct 1376 TTTGGTAAGGGGCAGTTTCTCAGGAGCTGTGAAGAAGTGAAGAACCAGTCTCTTGGTACG 1435 Query 1436 AGAGGTG-ACGAATCAAAGTCATGGACTTACCAGTATCTAATGGAAGTTGTGGTTAAGAA 1494 |||| | | ||||| |||||||||||||||||||||||||||||| | ||||||||||| Sbjct 1436 AGAGACGGA-GAATCGAAGTCATGGACTTACCAGTATCTAATGGAACTAGTGGTTAAGAA 1494 Query 1495 TCAGAAAACTGTACCTTAGTATGTAAATTTGAACCTATACAAACACTAGACTGTATGTAG 1554 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1495 TCAGAAAACTGTACCTTAGTATGTAAATTTGAACCTATACAAACACTAGACTGTATGTAG 1554 Query 1555 ACACT 1559 | ||| Sbjct 1555 AGACT 1559 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76957435485 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5