BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493491
Length=1559
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14190.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2355 0.0
> AT4G14190.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr4:8183544-8185187 REVERSE LENGTH=1563
Length=1563
Score = 2355 bits (1275), Expect = 0.0
Identities = 1471/1565 (94%), Gaps = 15/1565 (1%)
Strand=Plus/Plus
Query 1 TGTAATGGAGAATCTGACGACGGCGCAATTTCTCCACAGAGCGACGCTACAGAAGAATCC 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 4 TGTAATGGAGAATCTGACGACGGCGCAATTTCTCCACAGAGCGACGCTACTGAAGAAGCC 63
Query 61 ACCTCCTCCACCATGGAATTTGAACTCAAGCTTTCTCACTTCCATTTCCTATTCGATACC 120
||||||||| ||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct 64 ACCTCCTCCTCCATGGAATTTGAACTCAAGCTTTCTCACATCTACCTCCTATTCGATACC 123
Query 121 TA-AACTCTCTTCTCTCCGCCG-TGCTTTGCCCTTGTCTATCAATGGCGACGCGTCGCAG 178
|| | || |||||||||||||| | ||||||||||||||||||||||||||||| | |||
Sbjct 124 TAGACCT-TCTTCTCTCCGCCGCT-CTTTGCCCTTGTCTATCAATGGCGACGCGACACAG 181
Query 179 TCCACCTCTCTTATCCACCACCACCACCGGTTTCTCAGTTCATTGCCACGGCGGCTCGA- 237
||||||||| | | | |||||||||||||||||||||||||||| ||||||||||| |
Sbjct 182 CCCACCTCTC-T-T-CTCCACCACCACCGGTTTCTCAGTTCATTGACACGGCGGCTC-AG 237
Query 238 AATTCCCGGTTCATGTCCTCTACGG-TTGCTTCAGGAAGATGGAGATTGGAGCAAAGACC 296
|| ||||||| |||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 238 TCTTTCCGGTTCGTGTCCTCTACGGCTT-CTTCAGGAGGATGGAGATTGGAGCAAAGACC 296
Query 297 ATTTCTGGGCTGTTATTCGTTTTCTCCGTCACTCCTCAAGACTCCACGAGATTCTTCCTG 356
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 297 ATTTCTGGGCCGTTATTCGTTTTCTCCGTCAGTCCTCAAGACTCCACGAGATTCTTCCTG 356
Query 357 TTTTTGATGCTTGGAAGAATCTTGAGCCTTCACGAATAAGCGAG-GCTAATTACGAGAGG 415
|||||||| | |||||||||||||||||||| |||||||| ||| | |||||||| |||
Sbjct 357 TTTTTGATACGTGGAAGAATCTTGAGCCTTCGCGAATAAGTGAGAAC-AATTACGAAAGG 415
Query 416 GTTATAAGGCTTTTATGTGAGGAAAAATCGATGAATGAAGCAATTCGAGCTTTTCGCGGT 475
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 416 ATTATAAGGTTTTTATGTGAGGAAAAATCGATGAGTGAAGCAATTCGAGCTTTTCGTAGT 475
Query 476 ATGATTGATGATCATGAGCTAAGTCCGTCTTTAGAAATATATAATTCAATCATCCATGGT 535
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||
Sbjct 476 ATGATTGATGATCATGAGCTAAGTCCGTCTTTAGAAATCTATAATTCAATCATACATAGT 535
Query 536 TATGCTGATGAAGGGAAGTTTGAGGAAGCTATGTTCTATTTGAATCATATGAAAGAGAAT 595
||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 536 TATGCTGATGATGGGAAGTTTGAGGAAGCTATGTTCTACTTGAATCATATGAAGGAGAAT 595
Query 596 GGTCTGTTACCGATAACCGAGACATACGATGGCTTGATTGAAGCATATGGTAAATGGAAA 655
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 596 GGTCTGTTACCGATAACGGAGACATACGATGGATTGATTGAAGCATATGGTAAATGGAAA 655
Query 656 ATGTATGATGAGATTGTTTTGTGTCTCAAGAGAATGGAGTCTGAAGGTTGTGTGCGTGAT 715
|||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 656 ATGTATGATGAGATTGTTTTGTGTCTTAAGAGAATGGAATCTGATGGTTGTGTGCGTGAT 715
Query 716 CATATTACTTATAATCTACTCATACGCGAGTTTTCCCGAGGAGGGTTGCTTAAGAGAATG 775
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 CATGTTACTTATAATCTACTCATACGCGAGTTTTCCCGAGGAGGGTTGCTTAAGAGAATG 775
Query 776 GAGCAAATGTATCAGAGTTTGATGTCGAGGAAGATGACTCTCGAGCCTTCTACGTTGTTG 835
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 776 GAGCAAATGTATCAGAGTTTGATGTCGAGGAAGATGACTTTGGAGCCTTCTACGTTGTTG 835
Query 836 TCCATGCTTGAAGCTTATGCAGAGTTTGGGCTAATTGAAAAGATGGAGGAAACGTGTAAC 895
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 TCTATGCTTGAAGCTTATGCAGAGTTTGGGCTAATTGAAAAGATGGAGGAAACGTGTAAC 895
Query 896 AAGATTATAAGGTTTGGGATCTCTCTGGATGAGGGTTTAGTTAGAAAATTAGCTAATGTT 955
|||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||
Sbjct 896 AAGATTATAAGGTTTGGGATTTCTTTGGATGAGGGTTTAGTTAGGAAATTAGCTAATGTT 955
Query 956 TACATTGATAACCTCATGTTTTCGAGGCTTGATGATTTGGGTCGTGGCATTTCTTCCTCT 1015
|| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||| | |||
Sbjct 956 TATATTGAAAACCTCATGTTCTCGAGACTTGATGATTTGGGTCGTGGCATTTCTGCTTCT 1015
Query 1016 AGAACCCGTAGGACCGATCTGGCTTGGTGTCTCAGGCTTCTGTGTCATGCCCGACTTGTG 1075
|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 1016 AGAACCCGTAGGACTGAACTTGCTTGGTGTCTCAGGCTTCTGTGTCATGCCCGACTTGTG 1075
Query 1076 AGTCGGAAAGGTTTGGATTATGTTGTTAAAGAGATGGAAGAAGCTAGAGTTCCTTGGAAT 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 AGTCGGAAAGGTTTGGATTATGTTGTTAAAGAGATGGAAGAAGCTAGAGTTCCTTGGAAT 1135
Query 1136 ACAACTTTTGCCAATATCGCACTTTTAGCTTACTCAAAGATGGGAGATTTTAAGAGCATT 1195
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1136 ACAACTTTTGCCAATATCGCACTTTTAGCTTACTCAAAGATGGGAGATTTCACGAGCATT 1195
Query 1196 GAGCTGTTACTCTCTGAGCTACGGACAAAACATGTGAAGCTTGATCTTGTAACTGTAGGG 1255
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1196 GAGCTGTTACTCTCTGAGCTCCGGATAAAACATGTGAAGCTTGATCTTGTAACTGTAGGA 1255
Query 1256 ATTATCTTCGACTTGAGCGAAGCTGGGTTCGACGGTACTGGAGTTTTCATGACTTGGAAA 1315
||| |||| |||||||| |||||| |||||||||| ||||||||||| ||||||||||||
Sbjct 1256 ATTGTCTTTGACTTGAGTGAAGCTAGGTTCGACGGCACTGGAGTTTTTATGACTTGGAAA 1315
Query 1316 AAGATTGGGTTTCTTGATAAGCCTGTGGAAATGAAGACAGACCCTTTGGTTCATGCTGCT 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 AAGATTGGGTTTCTTGATAAGCCTGTGGAAATGAAGACAGACCCTTTGGTTCATGCTGCT 1375
Query 1376 TTTGGTAAGGGGCAGTTTCTTAAGAGTTGTGAAGAAGTGAAGAACCAGTCTCTTGGTATG 1435
|||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||| |
Sbjct 1376 TTTGGTAAGGGGCAGTTTCTCAGGAGCTGTGAAGAAGTGAAGAACCAGTCTCTTGGTACG 1435
Query 1436 AGAGGTG-ACGAATCAAAGTCATGGACTTACCAGTATCTAATGGAAGTTGTGGTTAAGAA 1494
|||| | | ||||| |||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1436 AGAGACGGA-GAATCGAAGTCATGGACTTACCAGTATCTAATGGAACTAGTGGTTAAGAA 1494
Query 1495 TCAGAAAACTGTACCTTAGTATGTAAATTTGAACCTATACAAACACTAGACTGTATGTAG 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 TCAGAAAACTGTACCTTAGTATGTAAATTTGAACCTATACAAACACTAGACTGTATGTAG 1554
Query 1555 ACACT 1559
| |||
Sbjct 1555 AGACT 1559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76957435485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5