BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493493
Length=2706
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14160.1 | Symbols: | Sec23/Sec24 protein transport family ... 4135 0.0
AT3G23660.2 | Symbols: | Sec23/Sec24 protein transport family ... 1559 0.0
AT1G05520.1 | Symbols: | Sec23/Sec24 protein transport family ... 1232 0.0
> AT4G14160.1 | Symbols: | Sec23/Sec24 protein transport family
protein | chr4:8167465-8173365 FORWARD LENGTH=2770
Length=2770
Score = 4135 bits (2239), Expect = 0.0
Identities = 2488/2606 (95%), Gaps = 26/2606 (1%)
Strand=Plus/Plus
Query 118 GGAAGGTATGGATGGAGTTCGTATGACTTGGAACCTTTGGCCTCGCACTAAGGTTGAAGC 177
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 154 GGAAGGTATTGATGGAGTTCGTATGACTTGGAACCTTTGGCCTCGCACTAAGGTTGAAGC 213
Query 178 TAGCAAGTGTGTGATTCCTCTCGCCGCTTCAATTTCTCCGATCCGTCGTCACTCCGATAT 237
||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||
Sbjct 214 AAGCAAGTGTGTGATTCCTCTCGCCGCTTCAATTTCACCGATCCGTCGTCACCCCCTTAT 273
Query 238 CCCTGATCTCCCTTATGCTCCTCTCAAGTGCCGGACTTGTGTTGCTGTTCTCAACGCTTT 297
|| |||||||||||||||||||||| | ||| ||||||| ||| |||||||||| ||
Sbjct 274 CCTTGATCTCCCTTATGCTCCTCTCGATTGCAAGACTTGTAAAGCTCTTCTCAACGCCTT 333
Query 298 CGCTCGTGTTGATTTCAACGCTAAGATCTGGATCTGCCCTTTTTGCCATCAGAGGAATCA 357
|||||||||||||||| ||||| || |||| |||| ||||||||| |||| ||||||||
Sbjct 334 CGCTCGTGTTGATTTCGCCGCTATGAACTGGGTCTGTCCTTTTTGCTATCATAGGAATCA 393
Query 358 TTTCCCGGT-TCATTACCATTCGATCTCTGAGATTAATCTCCCTGGTGAGCTTTATCCTC 416
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 394 TTTCCC-TTCTCATTACCATTCGATCTCTGAGATTAATCTCCCTGGTGAGCTTTATCCCC 452
Query 417 AGTACACTACTGTTGAATACACGTTGCCAACTGGTGCTGCTGATCAG-GTGCCT---CCG 472
|||||||||||||||| ||||||||||| ||| | | | | || | |||||| ||
Sbjct 453 AGTACACTACTGTTGAGTACACGTTGCCTCCTGAT-CCG-T-CTC-GTGTGCCTCCACCA 508
Query 473 CCTGTGTTTGTGTTTGTTCTCGATACGTGTATGATTGAGGAAGAATTGGGATATGCCAAA 532
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 509 CCTGTGTTTGTGTTTGTTCTCGATACGTGCATGATTGAGGAAGAATTGGGATATGCCAAA 568
Query 533 TCGGCGCTTAAGCAGGCGATCGGGTTGCTTCCGGAGAATGCTTTGGTTGGGTTTGTGTCG 592
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 TCGGCTCTTAAGCAGGCGATCGGGTTGCTTCCGGAGAATGCTTTGGTTGGGTTTGTGTCG 628
Query 593 TTTGGTACTCAGGCTCATGTTCATGAATTGGGGTTCTCTGAGATGTCTAAAGTTTTTGTC 652
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 629 TTTGGTACTCAGGCTCATGTGCATGAATTGGGGTTCTCTGAGATGTCTAAAGTTTTTGTC 688
Query 653 TTTAAAGGCAATAAAGAAGTCACCAAGGATCAAATTTTGGATCAGTTGGGGCTTGGGTCT 712
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 689 TTTAAAGGCAATAAAGAAGTTACCAAGGATCAAATTTTGGATCAGTTGGGGCTTGGGTCT 748
Query 713 TCCTCAAGGAGAGCTCCTACTTCTGGGTTTCCTAAAGGAGCGCAAAACGGATTCCAGAGT 772
|| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 749 TCTTCGAGGAGAGCTCCTACTTCTGGGTTTTCTAAAGGAGCGCAAAACGGATTCCAGAGT 808
Query 773 TCCGGTGTTGACAGATTCCTGTTGCCCGCTTCGGAGTGCGAATACACACTGGACTTGCTT 832
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 809 TCCGGTGTTGACAGATTCCTGCTGCCCGCTTCGGAGTGTGAATACACACTGGACTTGCTT 868
Query 833 TTGGATGAGCTCCAATCAGACCAGTGGCCTGTTCAGCCAGGTCATCGTCCCCAACGATGC 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 TTGGATGAGCTCCAATCAGACCAGTGGCCTGTTCAGCCAGGTCATCGTCCCCAACGATGC 928
Query 893 ACAGGGGTTGCATTGAGTGTAGCTGCAGGATTGCTTGGAGCTTGCTTACCTGGAACTGGG 952
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 929 ACAGGGGTTGCATTGAGTGTAGCTGCAGGATTGCTTGGAGCTTGCTTACCTGGAACTGGT 988
Query 953 GCTAGAATTGTAGCTTTGGTTGGAGGTCCATGTACAGAGGGCCCTGGAACGATTATCTCA 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 GCTAGAATTGTAGCTTTGGTTGGAGGTCCATGTACAGAGGGCCCTGGAACGATTATCTCA 1048
Query 1013 AAGGATTTGTCAGATCCTGTGCGCTCCCACAAAGATCTAGATAAAGATGCTGCTCCTTAT 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1049 AAGGATTTGTCAGATCCTGTGCGCTCCCACAAAGATCTAGATAAAGATGCTGCTCCTTAT 1108
Query 1073 TATAAAAAAGCTGTCAAGTTTTATGATAGTATTGCAAAGCAGCTTGTCGCTCAGGGTCAT 1132
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 TATAAAAAAGCTGTAAAGTTTTATGATAGTATTGCAAAGCAGCTTGTCGCTCAGGGTCAT 1168
Query 1133 GTGTTAGACCTTTTCGCCTCTGCACTTGATCAGGTTGGGGTTGCTGAAATGAAAGTAGCC 1192
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1169 GTGTTAGACCTTTTCGCTTCTGCACTTGATCAGGTCGGGGTTGCTGAAATGAAAGTAGCC 1228
Query 1193 GTTGAAAGTACCGGTGGTCTCGTTGTTCTGTCTGAAAGTTTTGGCCATTCTGTATTTAAA 1252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1229 GTTGAAAGTACCGGTGGTCTCGTTGTTCTGTCTGAAAGTTTTGGCCATTCTGTATTTAAA 1288
Query 1253 GATTCCTTCAAGAGGGTGTTTGAAGATGGCGAGCAGTCTCTTGGTCTCTGCTTCAATGGC 1312
|||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1289 GATTCCTTTAAGAGGATGTTTGAAGATGGCGAGCACTCTCTTGGTCTCTGCTTCAATGGC 1348
Query 1313 ACGCTTGAGATCAATTGTTCAAAAGACATCAAAATTCAAGGGGTTATCGGGCCTTGCTCA 1372
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1349 ACGCTTGAGATAAATTGTTCAAAAGACATCAAAATTCAAGGGGTTATCGGGCCTTGCTCA 1408
Query 1373 TCATTAGAAAAGAAAGGTCCCAATGTTGCCGACACAGTCATTGGAGAGGGGAATACCAGT 1432
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1409 TCATTAGAAAAGAAAGGTCCCAATGTTGCTGACACAGTCATTGGAGAGGGGAATACCAGT 1468
Query 1433 GCTTGGAAGTTGTGTGGCCTCGACAAGAGTACCTGCTTGACTGTATTCTTTGATCTATCT 1492
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1469 GCTTGGAAATTGTGTGGCCTCGACAAGAGTACCTGCTTGACTGTATTCTTTGATCTATCT 1528
Query 1493 TCAACCGGGTCAAATGCTCCTGGAGCTGTAAATCCTCAGTTGTATTTGCAGTTTGTCACA 1552
||||||||||||| ||||||||||||| |||||| |||||||||||||||||| |||||
Sbjct 1529 TCAACCGGGTCAACTGCTCCTGGAGCTTTAAATCAGCAGTTGTATTTGCAGTTTATCACA 1588
Query 1553 AGTTACCAAAACCCTGAAGGTAAAAGTTT-GCTCCGGGTTACAACTGTAACCAGACAGTG 1611
|| ||||||||| |||||||||||||||| || ||||||||||||| |||||||||||||
Sbjct 1589 AGATACCAAAACTCTGAAGGTAAAAGTTTGGC-CCGGGTTACAACTTTAACCAGACAGTG 1647
Query 1612 GGTGGATACTGCTGTGAGCACAGAGGTAAAACTTGTGCAAGGCTTTGACCAAGAAACTGC 1671
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1648 GGTAGATACTGCTGTGAGCACAGAGGTAAATCTTGTGCAAGGCTTTGACCAAGAAACTGC 1707
Query 1672 TGCTGTGGTTATGGCAAGATTAACTTCCTTAAAAATGGAAACAGAGGAGGGATTTGATGC 1731
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1708 TGCAGTGGTTATGGCAAGATTAACTTCCTTAAAAATGGAAACAGAGGAGGGATTTGATGC 1767
Query 1732 TACTCGGTGGCTAGATCGGACTCTCATTCGTCTGTGTTCAAAATTTGGTGAATATAGAAA 1791
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1768 AACTCGGTGGCTAGATCGGACTCTCATTCGTCTGTGTTCAAAATTTGGTGAATATAGAAA 1827
Query 1792 GGATGATCCAACCTCGTTTACGCTGAATCCCTATTTTTCATTGTTCCCTCAATTCATGTT 1851
||||||||||||||||||||||||||| || ||| || ||||||||||||||||||||||
Sbjct 1828 GGATGATCCAACCTCGTTTACGCTGAAACCATATCTTACATTGTTCCCTCAATTCATGTT 1887
Query 1852 TAACTTGCGGCGGTCACAGTTTGTTCAGGTCTTTAACAACAGTCCTGATGAAACCGCATA 1911
|||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1888 TAACCTGAGGCGGTCACAGTTTGTTCAGGTCTTTAACAATAGTCCTGATGAAACCGCATA 1947
Query 1912 CTTCCGCATGCTGCTAAACCGGGAAAATATTTCAAATGCAACTGTCATGATCCAACCATC 1971
|||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||| ||
Sbjct 1948 CTTCCGCATGTTGCTAAACCGGGAAAACATTTCAAATGCAATTGTCATGATCCAACCTTC 2007
Query 1972 TCTGACGTCATATTCATTCAATGCACCACCTCAGCCAGCTTTGCTGGATGTGGCTTCCAT 2031
|||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||
Sbjct 2008 TCTGACGTCATATTCATTCAATTCAGGACCTCAGGCAGCTTTGCTGGATGTGGCTTCCAT 2067
Query 2032 TGCAGCTGACAAGATTCTTCTATTAGATGCATATTTTAGTGTTGTTGTCTTCCATGGAAT 2091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2068 TGCAGCTGACAAGATTCTTCTATTAGATGCATATTTTAGTGTTGTTGTCTTCCATGGAAT 2127
Query 2092 GACTATAGCGCAATGGCGAAACATGGGTTATCATCATCAGCCTGAACATGAGGCCTTTGC 2151
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2128 GACTATATCGCAATGGCGAAACATGGGTTATCATCATCAGCCTGAACATGAGGCCTTTGC 2187
Query 2152 TCAGTTATTGCAAGCTCCTCAAGAGGATTCCCAGATGTTAGTCCGGGAGCGTTTCCCAGT 2211
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2188 TCAGTTATTGCAAGCTCCGCAAGAGGATTCCCAGATGTTAGTCCGGGAGCGTTTCCCAGT 2247
Query 2212 CCCGAGATTAGTTGTGTGTGATCAACATGGATCACAGGCAAGGTTTTTATTGGCTAAGCT 2271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2248 CCCGAGATTAGTTGTGTGTGATCAACATGGATCACAGGCAAGGTTTTTATTGGCTAAGCT 2307
Query 2272 GAATCCATCAGCGACTTACAACAATGCAAACGAGATGTCAGCTGGGTCAGACATAATCTT 2331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2308 GAATCCATCAGCGACTTACAACAATGCAAACGAGATGTCAGCTGGGTCAGACATAATCTT 2367
Query 2332 CACTGACGATGTGAGCCTGCAAGTCTTTTTTGAGCATCTTTC-GAAACTGGCCGTGCAAT 2390
|||||||||||||||||||||||||||| |||| |||||| | |||||||||||||||||
Sbjct 2368 CACTGACGATGTGAGCCTGCAAGTCTTTATTGAACATCTT-CAGAAACTGGCCGTGCAAT 2426
Query 2391 CCTGAGCAAAGTAGTCACAGTCCCAGTTC-TTTTTTGCTTAAATTATCCATATCTTCCTG 2449
|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 2427 CCTGAGCAAAGTAGTCACAGTCCCAGTTTGTTTTTTGCTTAAATTATCTATATCTTCCTG 2486
Query 2450 ATTACCCGCATGCCCGTTTGTACCATTTTAGAGCTCTTTGTTATTTTGGTCTCACATAAG 2509
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2487 ATTACCCGCATGCCCGTTTGTACTATTTTAGAGCTCTTTGTTATTTTGGTCTCACATAAA 2546
Query 2510 ATACATCATAGTTG-AAGTCTTTTATTTGCATTGGGATTTGTCTGGAGTACAGAGATTTA 2568
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2547 ATACATCATAGTTGGAAGTCTTTTATTTGCATTGGGATTTGTCTGGAGTACAGAGATTTA 2606
Query 2569 CTATTTGCTTCtttttt-tttttttGTTTGGGATGAAATCTCTTGTATGATCAATTCAAT 2627
||||||||||||| ||| ||||||| ||||||||||||||||||||||||| || ||||
Sbjct 2607 CTATTTGCTTCTTCTTTCTTTTTTT-TTTGGGATGAAATCTCTTGTATGATTGAT-CAAT 2664
Query 2628 TATATGGTTTGGGTCTGTGGCTTTAGTACTTTTGG-------ACATCTTCTCTGCTTCTG 2680
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 2665 TATATGGTTTGGGTCTGTGGCTTTAGTACTTTTGGTCCTTGGACAACTTCTCTGCTTCTG 2724
Query 2681 ATCCAGTATGTTGCGTTACTGCGTTT 2706
||||||||||||||| ||||||||||
Sbjct 2725 ATCCAGTATGTTGCGCTACTGCGTTT 2750
> AT3G23660.2 | Symbols: | Sec23/Sec24 protein transport family
protein | chr3:8513457-8517790 REVERSE LENGTH=2646
Length=2646
Score = 1559 bits (844), Expect = 0.0
Identities = 1376/1627 (85%), Gaps = 60/1627 (4%)
Strand=Plus/Plus
Query 119 GAAGGTATGGATGGAGTTCGTATGACTTGGAACCTTTGGCCTCGCACTAAGGTTGAAGCT 178
||||| || ||||||||||||||||| |||||| | ||||||| | || | |||||||
Sbjct 89 GAAGGAATCGATGGAGTTCGTATGACATGGAACGTCTGGCCTCATTCCAAAGCTGAAGCT 148
Query 179 AGCAAGTGTGTGATTCCTCTCGCCGCTT-CAATTTCTCCGATCCGTCGTCACT-CCGATA 236
||||| || ||||| || |||||||||| | |||||||||||||| || || | ||||||
Sbjct 149 AGCAAATGCGTGATCCCACTCGCCGCTTGC-ATTTCTCCGATCCGGCGACA-TGCCGATA 206
Query 237 TCCCTGA-TCTCCCTTATGCTCCTCT-CAAGTGCCGGACTTGTGT-TGCTG-TTCTCAAC 292
||||| | ||| ||||| || || || | | |||||||||||| | |||| | | |||
Sbjct 207 TCCCT-ACTCTTCCTTACGCACCGCTCCGA-TGCCGGACTTGT-TCCGCTGCGT-TAAAC 262
Query 293 GCTTTCGCTCGTGTTGATTTCAACGCTAAGATCTGGATCTGCCCTTTTTGCCATCAGAGG 352
|||| ||| | || ||||||| ||| ||| | |||||||| || ||||| ||||| |
Sbjct 263 GCTTACGCACAAGTCGATTTCACCGCAAAGCTTTGGATCTGTCCGTTTTGTTATCAGCGT 322
Query 353 AATCATTTCCCGGTTCATTACCAT-TCGATCTCTGAGATTAATCTCCCTGGTGAGCTTTA 411
|||||||||||| |||||| ||| | ||||||||||| |||||| ||||||||||||||
Sbjct 323 AATCATTTCCCGCCTCATTATCATGT-GATCTCTGAGACTAATCTTCCTGGTGAGCTTTA 381
Query 412 TCCTCAGTACACTACTGTTGAATACAC-GTT--GCCAACTGGT-G-C--TGCTG-A--TC 461
||||||||||||||||||||||||||| || || || || | | | | | ||
Sbjct 382 TCCTCAGTACACTACTGTTGAATACACTCTTCCTCCGCCT-GTAGCCAACGGGGAAGGTC 440
Query 462 AGGTGCCTCCGCCTGTGTTTGTGTTTGTTCTCGATACGTGTATGATTGAGGAAGAATTGG 521
|||| |||||| ||||||||||||||||| ||||| ||||||||||| |||||||| |
Sbjct 441 TGGTGGATCCGCCGGTGTTTGTGTTTGTTCTTGATACTTGTATGATTGAAGAAGAATT-G 499
Query 522 GA-TATGCCAAATCGGCGCTTAAGCAGGCGATCGGGTTGCTTCCGGAGAATGCTTTGGTT 580
|| | ||| |||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 500 GATTTTGCTAAATCGGCGCTTAAACAAGCGATTGGGTTGCTTCCGGAGAATGCTTTGGTT 559
Query 581 GGGTTTGTGTCGTTTGGTACTCAGGCTCATGTTCATGAATTGGGGTTCTCTGAGATGTCT 640
|| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 560 GGATTTGTGTCGTTTGGTACTCAGGCTCATGTACATGAATTGGGATTCTCTGAGATGTCT 619
Query 641 AAAGTTTTTGTCTTTAAAGGCA-ATAAAGAAG-TCACCAAGGATCAAATTTTGGATCAGT 698
||||||||||| |||||||| | |||||| || | | || ||||| |||||||||||||
Sbjct 620 AAAGTTTTTGTTTTTAAAGG-AGATAAAG-AGATTTCGAAAGATCAGATTTTGGATCAGT 677
Query 699 TGGGGCTTGGGT-CTTCCTCAAGGAGAGCTCCTACTTCTGGGTTTCCTAAAGGAGCGCAA 757
|||||||| ||| ||| || ||||||| | || || |||||||| | |||
Sbjct 678 TGGGGCTT-GGTGGTTCTTCTAGGAGAG----GA------GG-TT-CTAAAGGACCTCAA 724
Query 758 AACGGATTCCAGAGTTCCGGTGTTG-ACAGATTCCTGTTGCCCGCTTCGGAGTGCGAATA 816
|| || |||| |||||| ||| ||| | |||||| ||||||| ||||| ||||||||||
Sbjct 725 AATGGCTTCCCGAGTTCTGGT-TTGAATAGATTCTTGTTGCCTGCTTCCGAGTGCGAATT 783
Query 817 CACACTGGACTTGCTTTTGGATGAGCTCCAATCAGACCAGTGGCCTGTTCAGCCAGGTCA 876
|||||| ||| ||||||||||||||| ||| || |||||||||||| ||||||||||
Sbjct 784 CACACTCAACTCGCTTTTGGATGAGCTACAAAGTGATCAGTGGCCTGTTAAGCCAGGTCA 843
Query 877 TC-GTCCCCAACGATGCACAGGGGTTGCATTGAGTGTAGCTGCAGGATTGCTTGGAGCTT 935
|| || |||||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 844 TCGGT-CCCAACGATGTACAGGCGTGGCATTGAGTGTAGCTGCAGGATTGCTTGGAGCTT 902
Query 936 GCTTACCTGGAACTGGGGCTAGAATTGTAGCTTTGGTTGGAGGTCCATGTACAGAGGGCC 995
|||| |||||||||||||||||||||||||||||| | |||||||||||||| || ||||
Sbjct 903 GCTTGCCTGGAACTGGGGCTAGAATTGTAGCTTTGATCGGAGGTCCATGTACGGAAGGCC 962
Query 996 CTGGAACGATTATCTCAAAGGATTTGTCAGATCCTGTGCGCTCCCACAAAGATCTAGATA 1055
||||||||||| |||||||||||||||| ||||||||||| || ||||||||| ||||||
Sbjct 963 CTGGAACGATTGTCTCAAAGGATTTGTCGGATCCTGTGCGTTCTCACAAAGATTTAGATA 1022
Query 1056 AAGATGCTGCTCCTTATTATAAAAAAGCTGTCAAGTTTTATGATAGTATTGCAAAGCAGC 1115
||||||| ||||| || ||||| || |||||||||||||||||||| || |||||||| |
Sbjct 1023 AAGATGCCGCTCCGTACTATAAGAAGGCTGTCAAGTTTTATGATAGCATCGCAAAGCAAC 1082
Query 1116 TTGTCGCTCAGGGTCATGTGT-TAGACCTTTTCGCCTCTGCACTTGATCAGGTTGGGGTT 1174
| ||| ||||||||||||| | |||||||||| || |||||||||||||||||||| |||
Sbjct 1083 TAGTCACTCAGGGTCATGT-TCTAGACCTTTTTGCTTCTGCACTTGATCAGGTTGGTGTT 1141
Query 1175 GCTGAAATGAAAGTAGCCGTTGAAAGTACCGGTGGTCTCGTTGTTCTGTCTGAAAGTTTT 1234
||||| |||||||| || |||||||| || ||||| || |||||||||||||||||||||
Sbjct 1142 GCTGAGATGAAAGTTGCAGTTGAAAGAACTGGTGGCCTTGTTGTTCTGTCTGAAAGTTTT 1201
Query 1235 GGCCATTCTGTATTT-AAAGATTCCTTCAAGAGGGTGTTTGAAGATGGCGAGCAGTCTCT 1293
||||||||||| ||| ||||||||||||||| | || |||||||||||||| ||| ||||
Sbjct 1202 GGCCATTCTGT-TTTCAAAGATTCCTTCAAGCGAGTATTTGAAGATGGCGATCAGGCTCT 1260
Query 1294 TGGTCTCTGCTTCAATGGCACGCTTGAGATCAATTGTTCAAAAGACATCAAAATTCAAGG 1353
||| |||||||| ||||| |||||||||||| ||||||| | |||||||||||||||||
Sbjct 1261 TGGCCTCTGCTTTAATGGGACGCTTGAGATCTGTTGTTCACAGGACATCAAAATTCAAGG 1320
Query 1354 GGTTATCGGGCCTTGCTCATCATTAGAAAAGAAAGGTCCCAATGTTGCCGACACAGTCAT 1413
|| ||| ||||| |||||||||||||| ||||||||| | | |||||| ||||| || ||
Sbjct 1321 GGCTATTGGGCCATGCTCATCATTAGAGAAGAAAGGTGCTAGTGTTGCTGACACGGTTAT 1380
Query 1414 TGGAGAGGGGAATACCAGTGCTTGGAAGTTGTGTGGCCTCGACAAGAGTACCTGCTTGAC 1473
|||||||||||||| |||||||| |||||||||||| || || | ||| || |||||
Sbjct 1381 CGGAGAGGGGAATACTTCTGCTTGGAGGTTGTGTGGCCTTGATAAAACTACGTGTTTGAC 1440
Query 1474 TG-TATTCTTTGATC-TATCTTCAACCGGGTCAAATGCTCCTGGAGCTGTAAATCCTCAG 1531
| |||| ||||| | ||||||||| |||||||||| |||||||||||| ||||| |||
Sbjct 1441 -GATATTTTTTGA-CATATCTTCAAGCGGGTCAAATACTCCTGGAGCTGCGAATCCACAG 1498
Query 1532 TTGTATTTGCAGTTTGTCACAAGTTACCAAAACCCTGAAGGTAAAAGTTTGCTCCGGGTT 1591
|| |||||||||||| |||||||||| ||||||||||||||| ||| ||||||||||||
Sbjct 1499 TTTTATTTGCAGTTTCTCACAAGTTATCAAAACCCTGAAGGTCAAACATTGCTCCGGGTT 1558
Query 1592 ACAACTGTAACCAGACAGTGGGTGGATACTGCTGTGAGCACAGAGGTAAAACTTGTGCAA 1651
|| |||||| |||||||||| | || | ||||||||| |||||| || |||||||||
Sbjct 1559 ACTACTGTATGCAGACAGTGGATAGACAGTGCTGTGAGTTCAGAGG-AA--CTTGTGCAA 1615
Query 1652 GGCTTTGACCAAGAAACTGCTGCTGTGGTTATGGCAAGATTAACTTCCTTAAAAATGGAA 1711
||||||||||||||||||||||||||||| ||||| |||||| |||| || ||||||||
Sbjct 1616 GGCTTTGACCAAGAAACTGCTGCTGTGGTCATGGCTAGATTAGCTTCTTTGAAAATGGAG 1675
Query 1712 ACAGAGG 1718
||||||
Sbjct 1676 TCAGAGG 1682
Score = 817 bits (442), Expect = 0.0
Identities = 605/684 (88%), Gaps = 10/684 (1%)
Strand=Plus/Plus
Query 1718 GAGGGATTTGATGCTACTCGGTGGCTAGATCGGACTCTCATTCGTCTGTGTTCAAAATTT 1777
|||||||||||||||||||| ||| ||||||||| |||||||||||| ||||||||||||
Sbjct 1760 GAGGGATTTGATGCTACTCGCTGGTTAGATCGGAATCTCATTCGTCTTTGTTCAAAATTT 1819
Query 1778 GGTGAATATAGAAAGGATGATCCAACCTCGTTTACGCTGAATCCCTATTTTTCATTGTTC 1837
|| || |||||||||||||||||| |||| || |||||||||||||||||||| || ||
Sbjct 1820 GGAGACTATAGAAAGGATGATCCAGCCTCCTTCACGCTGAATCCCTATTTTTCGTTATTT 1879
Query 1838 CCTCAATTCATGTTTAACT-TGCGGCGGTCACAGTTTGTTCAGGTCTTTAACAACAGTCC 1896
|||||||| || ||||| | ||||||| || |||||||||||||| |||||||| || ||
Sbjct 1880 CCTCAATTTATATTTAA-TCTGCGGCGATCGCAGTTTGTTCAGGTATTTAACAATAGCCC 1938
Query 1897 TGATGAAACCGCATACTTCCGCATGCTGCTAAACCGGGAAAATATTTCAAATGCAACTGT 1956
||||||||||||||| ||| ||||| | ||||||||||| |||||||| |||||||||||
Sbjct 1939 TGATGAAACCGCATATTTCTGCATGTTACTAAACCGGGAGAATATTTCGAATGCAACTGT 1998
Query 1957 CATGATCCAACCATC-TCTGACGTCATATTCATTCAATGCACCACCTCAGCCAGCTTTGC 2015
|||||||||||| || | | || |||||||||||||| ||||| || | ||||||||||
Sbjct 1999 CATGATCCAACCGTCGT-TAACAACATATTCATTCAATTCACCAGCTGAACCAGCTTTGC 2057
Query 2016 TGGATGTGGCTTCCATTGCAGCTGA-CAAGATTCTTCTATTAGATGCATATTTTAGTGTT 2074
| |||||||||||||||||||| || | | |||||| ||||||||||||||||||| |||
Sbjct 2058 TAGATGTGGCTTCCATTGCAGCCGATCGA-ATTCTTTTATTAGATGCATATTTTAGCGTT 2116
Query 2075 GTTGTCTTCCATGGAATGACTATAGCGCAATGGCGAAACATGGGTTATCATCATCAGCCT 2134
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 2117 GTTGTCTTCCATGGAATGACTATAGCACAATGGCGAAATATGGGTTATCATCATCAGCCT 2176
Query 2135 GAACATGAGGCCTTTGCTCAGTTATTGCAAGCTCCTCAAGAGGATTCCCAGATGTTAGTC 2194
||||| |||| |||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 2177 GAACACCAGGCTTTTGCTGAGTTATTGCAAGCTCCTCAAGAGGATTCCCAGATGATAGTC 2236
Query 2195 CGGGAGCGTTTCCCAGTCCCGAGATTAGTTGTGTGTGATCAACATGGATCACAGGCAAGG 2254
||||| |||||||| ||||| ||||||||||| |||||||| ||||| || |||||||||
Sbjct 2237 CGGGAACGTTTCCCTGTCCCAAGATTAGTTGTCTGTGATCAGCATGGCTCGCAGGCAAGG 2296
Query 2255 TTTTTATTGGCTAAGCTGAATCCATCAGCGACTTACAACAATGCAAACGAGATGTC-AGC 2313
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 2297 TTTTTATTGGCGAAGCTGAATCCATCAGCGACGTACAACAATGCAAACGAGATGTCTA-C 2355
Query 2314 TGGGTCAGACATAATCTTCACTGACGATGTGAGCCTGCAAGTCTTTTTTGAGCATCTTTC 2373
|||||||| | || ||||| ||||| |||||||| |||||||| ||||||||||| |
Sbjct 2356 AGGGTCAGATGTGATATTCACAGACGACGTGAGCCTTCAAGTCTTCTTTGAGCATCTC-C 2414
Query 2374 -GAAACTGGCCGTGCAATCCTGAG 2396
||| |||| ||||| || ||||
Sbjct 2415 AGAAGCTGGTTGTGCAGTCTTGAG 2438
> AT1G05520.1 | Symbols: | Sec23/Sec24 protein transport family
protein | chr1:1630900-1635711 REVERSE LENGTH=2586
Length=2586
Score = 1232 bits (667), Expect = 0.0
Identities = 1546/1965 (79%), Gaps = 82/1965 (4%)
Strand=Plus/Plus
Query 476 GTGTTTGTGTTTGTTCTCGATACGTGTATGATTGAGGAAGAATTGGGATATGCCAAATCG 535
|||||||| ||||| || || |||||||||||||| || || || ||||| || |||||
Sbjct 435 GTGTTTGTTTTTGTCCTGGACACGTGTATGATTGAAGAGGAGTTTGGATACGCGAAATCT 494
Query 536 GCGCTTAAGCAGGCGATCGGGTTGCTTCCGGAGAATGCTTTGGTTGGGTTTGTGTCGTTT 595
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 495 GCGCTTAAGCAGGCGATCGGGTTGCTTCCGGAGAATGCATTGGTTGGGTTTGTCTCGTTT 554
Query 596 GGTACTCAGGCTCATGTTCATGAATTGGGGTTCTCTGAGATGTCTAAAGTTTTTGTCTTT 655
|| || ||||| |||||||| || ||||||| ||||| || ||||||||| |||||||
Sbjct 555 GGGACGCAGGCGCATGTTCACGAGCTGGGGTTTTCTGATTTGACTAAAGTTTATGTCTTT 614
Query 656 AAAGGCA-ATAAAGAAG-TCACCAAGGATCAAATTTTGGATCAGTTGGGGCTTGGGT-CT 712
| || | || ||| || || |||| |||||| ||||||| ||||| |||||| ||| ||
Sbjct 615 -AGGGGAGAT-AAGGAGATCTCCAAAGATCAAGTTTTGGAGCAGTTAGGGCTT-GGTGCT 671
Query 713 TCCTCAAGGAGA-G-CTCCTACTT-CTGGGTTTCCTAA--AGGAGCGCA-AA-AC-G--G 762
| || ||||| | || || ||| ||||| || |||| | | || | |
Sbjct 672 T-CT--GGGAGACGAAACCCGGTTGGTGGTTTTCC-AATGGGGAG-GGATAATTCTGCCA 726
Query 763 ATTCCAG--AGTTCCGGTGTTGACAGATTCCTGTTGCCCGCTTCGGAGTGCGAATACAC- 819
||| | | | ||| |||||| | |||||| ||||||| ||||| || || |||| |||
Sbjct 727 ATTTCGGCTA-TTCGGGTGTTAATAGATTCTTGTTGCCAGCTTCTGACTGTGAATTCACG 785
Query 820 ACTGGACTTGCTTTTGGATGAGCTCCA-ATCAGACCAGTGGCCTGTTCAGCCAGGTCATC 878
| | || ||||| ||||| ||||| || | | || ||||||||||| ||| | || | |
Sbjct 786 A-TTGATTTGCTGTTGGAAGAGCTACAGA-CGGATCAGTGGCCTGTCCAGGCTGG--A-C 840
Query 879 GTCCCCA---ACGATGCACAGGG-GTTGCAT-TGAGTGTAGCTGCAGGATTGCTTGGAGC 933
| | ||| ||||||||| ||| || || | | ||||| ||| | ||| | ||||||||
Sbjct 841 GGCGCCAGTCACGATGCAC-GGGAGTGGC-TATAAGTGTGGCTACGGGACTACTTGGAGC 898
Query 934 TTGCTTACCTGGAACTGGGGCTAGAATTGTAGCTTTGGTTGGAGGTCCATGTACAGAGGG 993
||| || |||||||||||||||||||| || ||||| ||||||| |||||| | |||||
Sbjct 899 TTGTTTTCCTGGAACTGGGGCTAGAATCGTTGCTTTAATTGGAGGACCATGTTCTGAGGG 958
Query 994 CCCTGGAACGATTATCTCAAAGGATTTGTCAGATCCTGTGCGCTCCCACAAAGATCTAGA 1053
|| || |||||| | ||||||||| | ||||| ||| |||| || || |||||||| ||
Sbjct 959 GCCAGGCACGATTGTGTCAAAGGATCTATCAGAACCTTTGCGTTCACATAAAGATCTTGA 1018
Query 1054 TAAAGATGCTGCTCC-TTATTATAAAAAAGCTGTCAAGTTTTATGATAG-TATTGCAAAG 1111
||||||||| ||||| || ||||| ||||| | || ||||||||| | | |||||
Sbjct 1019 TAAAGATGCGGCTCCGTT-CTATAAGAAAGCGGAGAAATTTTATGAT-GCGCTCGCAAAC 1076
Query 1112 CAGCTTG-TCGCTCAGGGTCATGTGTTAGACCTTTTCGCCTCTGCACTTGATCAGGTTGG 1170
|| || | | | || || ||||| | |||||||| || || |||||||||||||||||
Sbjct 1077 CAACTGGTTAAC-CAAGGACATGTACTGGACCTTTTTGCATCCGCACTTGATCAGGTTGG 1135
Query 1171 GGTTGCTGAAATGAAAG-TAGCCGTTGAAAGTACCGGTGGTCTCGTTGTTCTGTCTGAAA 1229
|||||||||||||||| | || |||||||| || || ||||| |||||| | || ||||
Sbjct 1136 TGTTGCTGAAATGAAAGCT-GCGGTTGAAAGAACTGGAGGTCTTGTTGTTTTATCAGAAA 1194
Query 1230 GTTTTGGCCATTCTGTATTTAAAGATTCCTTCAAGAGGGTGTTTGAAGATGGCG-AGCAG 1288
|||||||||||||||||||||| ||||| || ||| | || ||||||||||||| || ||
Sbjct 1195 GTTTTGGCCATTCTGTATTTAAGGATTCTTTTAAGCGAGTATTTGAAGATGGCGAAG-AG 1253
Query 1289 TCTCTTGGTCTCTGCTTCAATGGCACGCTTGAGATCAATTGTTCAAAAGACATCAAAATT 1348
||||| || || || |||||||| || ||||||||| |||||||| ||||| |||||
Sbjct 1254 TCTCTCGGCCTTTGTTTCAATGGTACACTTGAGATCTGCTGTTCAAAGGACATAAAAATC 1313
Query 1349 CAAGGGGTTATCGGGCCTTGCT-CATCATTAG-AAAAGAAAGGTCCC-AATGTTGCCGAC 1405
|||||| |||| || ||||| | | || || | |||||||||| ||| | ||||| ||
Sbjct 1314 CAAGGGATTATTGGACCTTG-TGCGTC-TTTGCAAAAGAAAGG-CCCTAGCGTTGCTGAT 1370
Query 1406 ACAGTCATTGGAGAGGGGAATACCAGTGC-TTGGAAGTTGTGTGGCCTCGACAAGAGTAC 1464
||||| ||||| ||||||||||| | | |||||| ||||||||||||| || || ||
Sbjct 1371 ACAGTTATTGGGGAGGGGAATACTA-CACAATGGAAGATGTGTGGCCTCGATAAAAGGAC 1429
Query 1465 CTGCTTGACTGTATTCTTTGATCTATCTTC-A---ACCGGGTCAAATGCTCCTGGAGCTG 1520
|| ||||| || ||||||||||| ||||| | | | |||| ||||||||||| ||
Sbjct 1430 TTGTTTGACAGTCTTCTTTGATCTTTCTTCTAGTGATC-AATCAAGTGCTCCTGGAGGTG 1488
Query 1521 TAAAT-CCTCAGTTGTATTTGCAGTTTGTCACAAGTTACCAAAACCCTGAAGGTAAAAGT 1579
||||| | || | ||||| || ||| | ||||| |||||||| | |||||||||
Sbjct 1489 TAAATAAC-CAACTATATTTACAATTTATGACAAGCTACCAAAATTCAAAAGGTAAAACA 1547
Query 1580 TTGCTCCGGGTTACAACTGTAACCAGACAGTGGGTGGATACTGCTGTGAGCACAGAGGTA 1639
|| | || ||||| ||||| |||||||| ||||| ||||||| | | ||||||||||
Sbjct 1548 TTACAGCGAGTTACTACTGTTACCAGACAATGGGTAGATACTGGTCTTAGCACAGAGG-- 1605
Query 1640 AAACTT-GTGCAAGGCTTTGACCAAGAAACTGCTGCTGTGGTTATGGCAAGATTAACTTC 1698
|| || |||||||| ||||| ||||||||||||||||||||| |||| |||||| ||||
Sbjct 1606 -AA-TTGGTGCAAGGTTTTGATCAAGAAACTGCTGCTGTGGTTGTGGCCAGATTAGCTTC 1663
Query 1699 CTTAAAAATGGAAACAGAGGAGGGATTTGATGCTACTCGGTGGCTAGATCGGA-CTCTCA 1757
||| |||||||||||||||||||||||||||||||| || ||||| || |||| | || |
Sbjct 1664 CTTGAAAATGGAAACAGAGGAGGGATTTGATGCTACGCGATGGCTGGACCGGAAC-CTTA 1722
Query 1758 TTCGTCTGTGTTCAAAATTTGGTGAATATAGAAAGGATGATCCAACCTCGTTTACGCTGA 1817
||||||| ||||| ||||||||||| || | ||||||||||| | || ||||| || |
Sbjct 1723 TTCGTCTTTGTTCTAAATTTGGTGATTACCGGAAGGATGATCCTGCTTCATTTACTCTAA 1782
Query 1818 ATCCCTATTTTTCATTGTTCCCTCAATTCATGTTTAA-CTTGCGGCGGTCACAGTTTGTT 1876
|||| | |||||| | |||||||| || | ||| || || || || |||||||||||
Sbjct 1783 ATCCAAACTTTTCACTATTCCCTCAGTTTACGTTCAATCTC-CGACGCTCACAGTTTGTG 1841
Query 1877 CAGGTCTTTAACAACAGTCCTGATGAAACCGCATACTTCCGCATGCTGCTAAACCGGGAA 1936
||||| || ||||| ||||| || ||||| || ||| ||||||||| ||||||| |||
Sbjct 1842 CAGGTGTTCAACAATAGTCCAGACGAAACTGCTTACAACCGCATGCTATTAAACCGAGAA 1901
Query 1937 AATATTTCAAATGCAACTGTCATGATCCAACCATCTCTGACGTCATATTCATTCAA-TGC 1995
|||||||| || ||| |||| ||||| || |||||||| || ||||||| || || | |
Sbjct 1902 AATATTTCGAACGCAGCTGTTATGATTCAGCCATCTCTAACAACATATTCGTTTAACT-C 1960
Query 1996 ACCACCTCAGCCAGCTTTGCTGGATGTGGCTTCCATTGCAGCTGACAAG-ATTCTTCTAT 2054
|| |||||| || || ||| ||||||| |||||||||| || ||| | || || || |
Sbjct 1961 ACTACCTCAACCTGCATTGTTGGATGTTGCTTCCATTGGTGCAGACC-GTATCCTCCTGT 2019
Query 2055 TAGATGCATATTTTAGTGTTGTTGTCTTCCATGGAATGACTATAGCGCAATGGCGAAACA 2114
| ||| | || |||||||||| || |||||||||||||| || || || ||||| |||
Sbjct 2020 TGGATTCTTACATTAGTGTTGTCGTTTTCCATGGAATGACCATTGCACAGTGGCGCAACT 2079
Query 2115 TGGGTTATCATCATCAGCCTGAACATGAGGCCTTTGCTCAGTTATTGCAAGCTCCTCAAG 2174
|||| ||||| ||||||||||||| |||| ||||| || | ||| |||| |||||||
Sbjct 2080 TGGGATATCAAAATCAGCCTGAACACCAGGCATTTGCCCAACTCTTGGAAGCCCCTCAAG 2139
Query 2175 AGGATTCCCAGATGTT-AGTCCGGGAGCGTTTCCCAGTCCCGAGATTAGTTGTGTGTGAT 2233
| ||| | |||||| | | || | || |||||||| || || ||||||||||| ||||||
Sbjct 2140 AAGATGCGCAGATGATCATTC-GTGATCGTTTCCCTGTACCAAGATTAGTTGTTTGTGAT 2198
Query 2234 CAACATGGATCACAGGCAAGGTTTTTATTGGCTAAGCTGAATCCATCAGCGACTTACAAC 2293
||||||||||| |||||||||||| | || || ||||| ||||| ||||| || ||||||
Sbjct 2199 CAACATGGATCCCAGGCAAGGTTTCTGTTAGCAAAGCTAAATCCGTCAGCAACATACAAC 2258
Query 2294 AATGCAAACGAGATGTCA-GCTGGGTCAGACATAATCTTCACTGACGATGTGAGCCTGCA 2352
||||||| ||||||| | || || || || ||||||||||| || ||||| || || ||
Sbjct 2259 AATGCAAGCGAGATGA-ATGCAGGCTCTGATATAATCTTCACGGATGATGTCAGTCTTCA 2317
Query 2353 AGTCTTTTTTGAGCATCTTTC-GAAACTGGCCGTGCAATCCTGAG 2396
|||||| || | |||||| | |||| |||| || ||||| ||||
Sbjct 2318 AGTCTTCTTCCAACATCTT-CAGAAATTGGCTGTTCAATCTTGAG 2361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 134397240297
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5