BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493497
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14130.1 | Symbols: XTR7, XTH15 | xyloglucan endotransglucos... 1637 0.0
AT3G23730.1 | Symbols: XTH16 | xyloglucan endotransglucosylase/... 710 0.0
> AT4G14130.1 | Symbols: XTR7, XTH15 | xyloglucan endotransglucosylase/hydrolase
15 | chr4:8137051-8138281 REVERSE LENGTH=1065
Length=1065
Score = 1637 bits (886), Expect = 0.0
Identities = 1005/1062 (95%), Gaps = 9/1062 (1%)
Strand=Plus/Plus
Query 1 ATCTCACACCAAAACACAAAGCT-TCATCTTC-TTTAGTTTCCAAACTCA-CCCCACAAC 57
||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 1 ATCTCACACCAAAACACAAAGCTCTCATCTTCTTTTAGTTTCCAAACTCACCCCCACAAC 60
Query 58 TTTCATTTCTACCAACCAAACCCAAATGGGTCGAAGCTCGAGCCTCACCACCGTCGTGGC 117
||||||||||| |||||||||||||||||||| ||| ||||||||||||||| |||||||
Sbjct 61 TTTCATTTCTATCAACCAAACCCAAATGGGTCCAAGTTCGAGCCTCACCACCATCGTGGC 120
Query 118 GGCTATTCTTCTGGTGACATTGGTCGGTTCGGCCTACGCAAGCAACTTCTTCGACGAGTT 177
| || ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 GACTGTTCTTCTTGTGACATTGTTCGGTTCGGCCTACGCAAGCAACTTCTTCGACGAGTT 180
Query 178 TGACCTCACTTGGGGTGACCACAGAGGCAAAATCTTCAACGGAGGGACGATGTTGTCTTT 237
||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 181 TGACCTCACTTGGGGTGACCACAGAGGCAAAATCTTCAACGGAGGAAATATGCTGTCTTT 240
Query 238 GTCATTGGACCGA-GTTTCCGGGTCGGGTTTCAAATCCAAGAAAGAGTATTTGTTTGGTC 296
||| |||||| | ||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 241 GTCGCTGGACC-AGGTTTCCGGGTCAGGTTTCAAATCCAAAAAAGAGTATTTGTTCGGTC 299
Query 297 GGATCGATATGCAGCTCAAACTCGTCGCCGGAAACTCTGCCGGCACCGTCACTGCTTACT 356
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 300 GGATCGATATGCAGCTCAAACTTGTCGCCGGAAACTCGGCCGGCACCGTCACTGCTTACT 359
Query 357 ACTTGTCATCTCAAGGAGCAACACATGACGAGATAGACTTTGAGTTTCTAGGGAACGAAA 416
||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 360 ACTTGTCTTCACAAGGAGCAACACATGACGAGATAGACTTTGAGTTTCTAGGTAACGAGA 419
Query 417 CAGGGAAGCCTTATGTTCTTCACACCAATGTCTTTGCTCAAGGGAAAGGAGACAGAGAGC 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CAGGGAAGCCTTATGTTCTTCACACCAATGTCTTTGCTCAAGGGAAAGGAGACAGAGAGC 479
Query 477 AACAGTTTTATCTCTGGTTCGATCCC-ACCAAGAATTTCCACACTTACTCCATTGTCTGG 535
|||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||
Sbjct 480 AACAGTTTTATCTCTGGTTCGA-CCCAACCAAGAACTTCCACACTTACTCCATTGTCTGG 538
Query 536 AGACCCCAACACATCATATTCTTGGTGGACAATTTACCCATTAGAGTCTTTAACAATGCA 595
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 539 AGACCCCAACACATCATATTCTTGGTGGACAATTTACCCATTAGAGTGTTCAACAATGCA 598
Query 596 GAGCGGCTCGGTGTTCCTTTCCCAAAGAGCCAACCCATGAGGATCTACTCGAGTCTGTGG 655
||| |||||| ||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 599 GAGAAGCTCGGCGTTCCTTTCCCAAAGAGTCAACCCATGAGGATCTACTCTAGCCTGTGG 658
Query 656 AATGCAGATGATTGGGCCACGAGAGGCGGTCTAGTCAAGACTGACTGGTCCAAGGCTCCT 715
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 659 AATGCAGACGATTGGGCCACGAGAGGTGGTCTAGTCAAGACTGACTGGTCCAAGGCTCCT 718
Query 716 TTCACAGCTTACTACAGAGGATTCAACGCAGCGGCTTGCACCGTCTCTTCAGGCTGTTAC 775
||||||||||||||||||||||||||||| ||||||||||| | ||||||||| ||| ||
Sbjct 719 TTCACAGCTTACTACAGAGGATTCAACGCTGCGGCTTGCACAGCCTCTTCAGGATGTGAC 778
Query 776 CCTAAATTCAAGAGTTCACTCGGTGATGGTAAATTGCAAGTGGCAAGCGAGCTCAATGCT 835
||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||
Sbjct 779 CCTAAATTCAAGAGTTCTTTTGGTGATGGTAAATTGCAAGTGGCAACCGAGCTCAATGCT 838
Query 836 TATGGCAGGAGGAGACTCAGATGGGTTCAGAAATACTTCATGATCTATAATTATTGCTCT 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TATGGCAGGAGGAGACTCAGATGGGTTCAGAAATACTTCATGATCTATAATTATTGCTCT 898
Query 896 GATCTCAAAAGGTTCCCTCGTGGATTCCCTCCAGAATGCAAGA-GATCCAGAGTCTGATG 954
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 899 GATCTCAAAAGGTTCCCTCGTGGATTCCCTCCAGAATGCAAGAAG-TCCAGAGTCTGATG 957
Query 955 AAAACATATTATCTCATATTTCTCTGCTTGTTTGATGCAATTCTTAAATCCCTCTGTTAT 1014
|| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 958 AACACATATTACCTCATATTTCTCTGCTTGTTTGATGCAATTCTTAAATTCCTCTGTTAT 1017
Query 1015 TCCATTGTACATTGTCAAGGTCAATAAAGCATTCCTGCTTTC 1056
||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1018 TCCATTGTACATTGTCAAGATCAATAAAGCATTCCTGGTTTC 1059
> AT3G23730.1 | Symbols: XTH16 | xyloglucan endotransglucosylase/hydrolase
16 | chr3:8550110-8551335 FORWARD LENGTH=1075
Length=1075
Score = 710 bits (384), Expect = 0.0
Identities = 664/798 (83%), Gaps = 23/798 (3%)
Strand=Plus/Plus
Query 169 CGACGAGTTTGACCTCACTTGGGGTGACCACAGAGGCAAAATCTTCAACGGAGGGACGAT 228
||| ||||||||| | ||||||||||| ||||||||||||||||||| ||||| | ||
Sbjct 196 CGAAGAGTTTGACTTAACTTGGGGTGAACACAGAGGCAAAATCTTCAGTGGAGGAAAAAT 255
Query 229 GTTGTCTTTGTCATTGGACCGAGTTTCCGGGTCGGGTTTCAAATCCAAGAAAGAGTATTT 288
|||||| | ||| | ||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 256 GTTGTCACTCTCACTAGACCGGGTTTCCGGGTCGGGTTTTAAATCCAAGAAAGAATATTT 315
Query 289 GTTTGGTCGGATCGATATGCAGCTCAAACTCGTCGCCGGAAACTCTGCCGGCACCGTCAC 348
||| || | ||||| |||||||| |||||||||||||| ||||| || || ||||||||
Sbjct 316 GTTCGGAAGAATCGACATGCAGCTTAAACTCGTCGCCGGTAACTCCGCTGGAACCGTCAC 375
Query 349 TGCTTACTACTTGTCATCTCAAGGAGCAACACATGACGAGATAGACTTTGAGTTTCTAGG 408
||| |||||||||||||| ||||| ||||||| ||||||||||||||||||||||| ||
Sbjct 376 TGCCTACTACTTGTCATCGGAAGGACCAACACACGACGAGATAGACTTTGAGTTTCTTGG 435
Query 409 GAACGAAACAGGGAAGCCTTATGTTCTTCACACCAATGTCTTTGCTCAAGGGAAAGGAGA 468
|| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| |
Sbjct 436 TAATGAAACAGGGAAGCCTTATGTTCTTCACACTAATGTATTTGCTCAAGGCAAAGGAAA 495
Query 469 CAGAGAGCAACAGTTTTATCTCTGGTTCGATCCCACCAAGAATTTCCACACTTACTC-CA 527
|||||| |||||||||||||||||||| ||||| |||||||| ||||||||||| || |
Sbjct 496 CAGAGAACAACAGTTTTATCTCTGGTTTGATCCAACCAAGAACTTCCACACTTATTCTC- 554
Query 528 TTGTCTGGAGACCCCAACACATCATATTCT-TGGTGGACAAT-TTACCCATTAGAGTCTT 585
||||||||||||| |||||||||||||| | |||| || ||| || || || ||||| ||
Sbjct 555 TTGTCTGGAGACCACAACACATCATATT-TATGGTAGATAATGTT-CCAATCAGAGTATT 612
Query 586 TAACAATGCAGAGCGGCTCGGTGTTCC-TTTCCCAAAGAGCCAACCCATGAGGATCTACT 644
||||||||||||| || |||||||| |||||||| || |||||| |||| ||| ||||
Sbjct 613 CAACAATGCAGAGCAACTTGGTGTTCCATTTCCCAA-GAACCAACCAATGAAGATATACT 671
Query 645 CGAGTCTGTGGAATGCAGATGATTGGGCCACGAGAGGCGGTCTAGTCAAGACTGACTGGT 704
||||| | |||||||||||||||||||| || ||||| ||| | || ||||| || ||||
Sbjct 672 CGAGTTTATGGAATGCAGATGATTGGGCTACAAGAGGTGGTTTGGTTAAGACAGATTGGT 731
Query 705 CCAAGGCTCCTTTCACAGCTTACTACAGAGGATTCAACGCAGCGGCTTGCACCGTCTCTT 764
| || |||||||||||||||||||||||||| || ||||| || ||||| || || ||||
Sbjct 732 CTAAAGCTCCTTTCACAGCTTACTACAGAGGCTTTAACGCTGCAGCTTGTACTGTTTCTT 791
Query 765 CAGG--C-TGTTAC------CCTAAATTCAAGAGTTCACTCGGTGATGGTAAAT-TGCAA 814
|||| | | || | ||||| || |||||||| | | ||||| ||| | |||
Sbjct 792 CAGGGTCATCTTTCTGTGATCCTAAGTTTAAGAGTTCTTTTACTAATGGTGAATCT-CAA 850
Query 815 GTGGC-AAGCGAGCTCAATGCTTATGGCAGGAGGAGACTCAGATGGGTTCAGAAATACTT 873
||||| || ||||| ||||||||||| || || ||| | |||||||||||||| || ||
Sbjct 851 GTGGCTAAT-GAGCTTAATGCTTATGGGAGAAGAAGATTAAGATGGGTTCAGAAGTATTT 909
Query 874 CATGATCTATAATTATTGCTCTGATCTCAAAAGGTTCCCTCGTGGATTCCCTCCAGAATG 933
||||| ||| ||||||| |||||| | |||||||| |||| |||||||| ||||| ||
Sbjct 910 TATGATTTATGATTATTGTTCTGATTTAAAAAGGTTTCCTCAAGGATTCCCACCAGAGTG 969
Query 934 CAAGA-GATCCAGAGTCT 950
| || | || |||||||
Sbjct 970 TAGGAAG-TCTAGAGTCT 986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51791405557
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5