BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493506
Length=647
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14060.1 | Symbols: | Polyketide cyclase/dehydrase and lipi... 933 0.0
AT2G01520.1 | Symbols: MLP328 | MLP-like protein 328 | chr2:235... 675 0.0
> AT4G14060.1 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr4:8107337-8108307 FORWARD
LENGTH=673
Length=673
Score = 933 bits (505), Expect = 0.0
Identities = 604/649 (93%), Gaps = 18/649 (3%)
Strand=Plus/Plus
Query 1 AGAAGAAACAAAAAACACACTTCACTAGCTACCAAAGGAagagagatagagagagaggga 60
|||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||
Sbjct 10 AGAAGAAACAAAAAACACACTTCACTCGCTACCGAAGGAAGAGAGAT--AGAGAGAGGGA 67
Query 61 gaTGGCGACTTCAGGAACATATGTGACGGAGGTTCCTTTGAAAGGATCAGCGGAGAAACA 120
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 68 GATGGCTACGTCAGGAACATATGTGACGGAGGTTCCTTTGAAAGGATCAGCGGAGAAACA 127
Query 121 CTACAAGCGGTGGAGGAATGAGAACCACCTCTTCCCCGACGCCATCGGTCACCACATCCA 180
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 128 CTACAAGCGGTGGAGGAATGAGAACCACCTTTTCCCCGACGCCATCGGCCACCACATCCA 187
Query 181 AGGTGTCGCCGTCCACGACGGCGAATGGGACTCCCATGGAGCCATCAAGATTTGGAACTA 240
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 188 AGGTGTCACCGTCCACGACGGCGAATGGGACTCCCATGGAGCCCTCAAGATTTGGAACTA 247
Query 241 CACATTAGATGGGAAACCGGAGGTGTTCAAGGAGAGGAGGGAGATAGATGATGAGAATAT 300
|||||||||||||||||||||| |||||||||||||||| |||||||| ||||| || ||
Sbjct 248 CACATTAGATGGGAAACCGGAGATGTTCAAGGAGAGGAGAGAGATAGACGATGAAAACAT 307
Query 301 GGCGGTGACGTTCAGA-GGACTAGAAGGTCACGTAATGGAGCAGCTTAAAGTGTATGATA 359
|||||| |||||| | ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 308 GGCGGTAACGTTC-GTTGGACTAGAAGGTCACGTGATGGAGCAGCTTAAAGTGTATGATA 366
Query 360 CCATCTTACAGTTCATTCAAAAGTCGCCTGG-TGATATCGTCTGCAAGATCACTATGACC 418
|||| |||||||||||||||||||| || || ||||||||| ||||||||||||||||||
Sbjct 367 CCATTTTACAGTTCATTCAAAAGTCCCC-GGATGATATCGTTTGCAAGATCACTATGACC 425
Query 419 TGGGAGAAGCGAACGGATGACTCGCCTGAGCCCAGCAACTACATGAAGTTGGTCAAGAGC 478
|||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 426 TGGGAGAAGCGAGCCGATGACTCGCCTGAACCCAGCAACTACATGAAGTTGGTCAAGAGT 485
Query 479 CTCGCTGCTGACATGGACGCCCACGTTCTCAAAGCCTAAAAACCCCCCTCTCACGTAAAC 538
||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||
Sbjct 486 CTCGCTGCTGACATGGACGCCCACGTTCTCAAAGCCTAAT--CCC---TCTCACCTAAAC 540
Query 539 CCATCATCATCgtgtgtgtgtgtgtATCTTT-TATGATGTTTTCAATATAATAAATGGGG 597
||||||||||||||||||| | |||| ||||||||||||||||||||||||||||
Sbjct 541 CCATCATCATCGTGTGTGTA-----A-CTTTGTATGATGTTTTCAATATAATAAATGGGG 594
Query 598 TTTTGCATGTATGGTTTCATCTACTGTAATATGCTTTGATGTTGTTTAT 646
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GTTTGCATGTATGGTTTCATCTACTGTAATATGCTTTGATGTTGTTTAT 643
> AT2G01520.1 | Symbols: MLP328 | MLP-like protein 328 | chr2:235925-237147
FORWARD LENGTH=789
Length=789
Score = 675 bits (365), Expect = 0.0
Identities = 450/491 (92%), Gaps = 6/491 (1%)
Strand=Plus/Plus
Query 59 gagaTGGCGACTTCAGGAACATATGTGACGGAGGTTCCTTTGAAAGGATCAGCGGAGAAA 118
||||||||||| |||||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct 65 GAGATGGCGACGTCAGGAACATATGTGACGGAGGTTCCATTGAAAGGATCGGCTGAGAAA 124
Query 119 CACTACAAGCGGTGGAGGAATGAGAACCACCTCTTCCCCGACGCCATCGGTCACCACATC 178
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 125 CACTACAAGCGGTGGAGGAGTGAGAACCACCTCTTCCCCGACGCCATCGGCCACCACATC 184
Query 179 CAAGGTGTCGCCGTCCACGACGGCGAATGGGACTCCCATGGAGCCATCAAGATTTGGAAC 238
||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 185 CAAGGTGTCACCATCCACGACGGTGAATGGGACTCCCATGGAGCCATCAAGATTTGGAAC 244
Query 239 TACACATTAGATGGGAAACCGGAGGTGTTCAAGGAGAGGAGGGAGATAGATGATGAGAAT 298
||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 245 TACACATGCGATGGGAAACCGGAGGTGTTCAAGGAGAGGAGAGAGATAGACGATGAGAAT 304
Query 299 ATGGCGGTGACGTTCAGAGGACTAGAAGGTCACGTAATGGAGCAGCTTAAAGTGTATGAT 358
|||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 305 ATGGCGGTAACGTTCAGAGGACTCGAAGGTCACGTGATGGAGCAGCTTAAAGTGTATGAC 364
Query 359 ACCATCTTACAGTTCATTCAAAAGTCGCCTGGTGATATCGTCTGCAAGATCACTATGACC 418
|||||| ||||||||||||||||| |||| ||||||| |||| ||||||||||||| |
Sbjct 365 GTCATCTTTCAGTTCATTCAAAAGTCACCTGATGATATCATCTGTAAGATCACTATGATC 424
Query 419 TGGGAGAAGCGAA-CGGATGAC-TCGCCTGAGCCCAGCAACTACATGAAGTTGGTCAAGA 476
|||||||||| || || ||||| | ||||||||||||||||||||||||||| |||||||
Sbjct 425 TGGGAGAAGCAAAACG-ATGACAT-GCCTGAGCCCAGCAACTACATGAAGTTCGTCAAGA 482
Query 477 GCCTCGCTGCTGACATGGACGCCCACGTTCTCAAAGCCTAAAAACCCCCCTCTCACGTAA 536
||||||||||||||||||| | ||||||||||||||||||| | ||| | |||| | |
Sbjct 483 GCCTCGCTGCTGACATGGATGATCACGTTCTCAAAGCCTAAATATCCCT-T-TCACATCA 540
Query 537 ACCCATCATCA 547
|||||||||||
Sbjct 541 ACCCATCATCA 551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31245639434
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5