BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493511
Length=1112
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14000.1 | Symbols: | Putative methyltransferase family pro... 1559 0.0
> AT4G14000.1 | Symbols: | Putative methyltransferase family protein
| chr4:8090817-8092672 FORWARD LENGTH=1232
Length=1232
Score = 1559 bits (844), Expect = 0.0
Identities = 978/1042 (94%), Gaps = 12/1042 (1%)
Strand=Plus/Plus
Query 58 TCTTCACAAGGTTCTGGTCTAGATTTAGGGTTCCTTGATTCACCAGAGCCAGCTCTTCCT 117
||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 68 TCTTCTCAAGGTTCTGGTCTAGGTTTAGGGTTCCTTGATTCATCAGAGCCAGCTCTTCCT 127
Query 118 CCACCGCCTCCTCCTGTTGAAGTATTATCCTCCGAGGTATCTTCCTCCGTC-GATTTCGA 176
||||| ||||||||||||||||||||||||| |||||| ||||||||| | ||||||||
Sbjct 128 CCACCTCCTCCTCCTGTTGAAGTATTATCCTTCGAGGTGTCTTCCTCC-ACTGATTTCGA 186
Query 177 AGTGGATAAAGTGATTATCGGCGAGATCACTCTTTTGAAGGGTCGTGTGAGCACTAAAGA 236
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 AGTGGATAAATTGACTATCGGCGAGATCACTCTTTTGAAGGGTCGTGTGAGCACTAAAGA 246
Query 237 GGTCTTTGGATTGCCTAATTCAGATTTGGTTCCTGGAGTCTATGAAGGCGGGCTTAAGCT 296
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 GGTTTTTGGATTGCCTAATTCAGATTTGGTTCCTGGAGTCTATGAAGGCGGGCTTAAGCT 306
Query 297 TTGGGAAGGATCAATTGATCTTGTCAAAGCTCTTGAAAAAGAATCACAAACTGGAAACTT 356
|||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 307 TTGGGAAGGATCGATTGATCTTGTTAAAGCTCTTGAGAAAGAATCACAAACCGGAAACTT 366
Query 357 ATCACTCTCTGGAAAGCGGGTTCTCGAGCTTGGATGTGGTCATGCACTTCCAGGAATCTA 416
|||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 ATCATTTTCCGGAAAGCGGGTTCTCGAGCTTGGATGTGGTCATGCACTTCCAGGAATCTA 426
Query 417 TGCGTGTCTCAAGGGTTCAGATG-TCGTCCATTTCCAGGACTTCAATGCTGAGGTCCTTC 475
||||||||||||||||||||||| | || |||||||||||||||||||||||||| ||||
Sbjct 427 TGCGTGTCTCAAGGGTTCAGATGCT-GTTCATTTCCAGGACTTCAATGCTGAGGTTCTTC 485
Query 476 GATGTCTCACCATTCCGAATCTAAATGCTAATCTGTCCGAGAAGTCTTCCTCTGTCTCAG 535
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 486 GATGTCTCACCATTCCGAATCTGAATGCTAATCTGTCTGAGAAGTCTTCCTCTGTCTCAG 545
Query 536 TAGGTGAAACAGAAGTACGCTTCTTCGCTGGTGAGTGGAGTGAAGTTCATCAGGTTCTTC 595
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 546 TAAGTGAAACAGAAGTACGCTTCTTTGCTGGTGAGTGGAGTGAAGTTCATCAGGTTCTTC 605
Query 596 CACTAGTTAATAGAGATGGTGAGACTAATAAGAAGGGTGGTTATGACGTCATTTTAATGG 655
||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 606 CACTAGTTAATAGTGATGGTGAGACTAATAAGAAGGGTGGTTATGACATCATTCTAATGG 665
Query 656 CTGAGACGATATATTCCATCTCCGCTCAGAAAAGTCTCTATCAATTGATTAAAAGGTGCC 715
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
Sbjct 666 CTGAGACGATATATTCCATCTCCGCTCAGAAAAGTCAATATGAATTGATTAAAAGGTGTC 725
Query 716 TGGCGTATCCTGATGGAGCAGTGTATATGGCTGCAAAGAAATACTATTTCGGGGTTGGTG 775
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 726 TGGCGTATCCTGATGGAGCAGTGTATATGGCTGCAAAGAAGTACTATTTCGGGGTCGGTG 785
Query 776 GAGGGACAAGGCAGTTCTTGTCTATGATAGAGAAAGACGGTGCTCTTGCTTCAACATTGG 835
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 786 GAGGGACAAGGCAATTCTTGTCTATGATAGAGAAAGACGGTGCTCTTGCTTCAACGTTGG 845
Query 836 TGGCTGAAGTCACAGATGGTTCCTCCAATGTCAGAGAGGTATGGAAGCTTTCCTACAAGT 895
|| || ||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 846 TGTCTCAAGTCACAGATGGTTCCTCAAATGTCAGAGAGGTATGGAAGCTTTCGTACAAGT 905
Query 896 AAGTCAAAGCTCTACTGGAATTCAGTGTCCAACGATCCGATTTTAGTGGATTTGGGTTGC 955
||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 906 AAGTCGAAGCTATACTGGAATTCAGTGTCCAACGATCTGATTTTAGTGGATTTGGGTTGC 965
Query 956 TCATAGAA-TGAGTAGAAATTCAAAATCTC--ATCCATGT-TTG-GCTTATAGACTCTGT 1010
||||| || ||||| ||||||||||||||| |||||||| || |||||||||||||
Sbjct 966 TCATAAAAATGAGTGGAAATTCAAAATCTCTCATCCATGTGTTTAGCTTATAGACTCTCC 1025
Query 1011 TGACTGTGT-A-A-TAATCGCTTAGTTTTTCACTTTAATACATTTTCTGACTTAACGAAA 1067
||||||||| | | |||| ||||||||||||| ||| ||||||||||| ||||||||||
Sbjct 1026 TGACTGTGTTATAATAATTGCTTAGTTTTTCATTTTGGTACATTTTCTGGCTTAACGAAA 1085
Query 1068 GGCTTATGTGATATGCCGTTGA 1089
|||||||||||| |||||||||
Sbjct 1086 GGCTTATGTGATCTGCCGTTGA 1107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54517791870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5