BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493513
Length=1691
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13980.1 | Symbols: AT-HSFA5, HSFA5 | winged-helix DNA-bindi... 2536 0.0
> AT4G13980.1 | Symbols: AT-HSFA5, HSFA5 | winged-helix DNA-binding
transcription factor family protein | chr4:8076980-8079314
REVERSE LENGTH=1721
Length=1721
Score = 2536 bits (1373), Expect = 0.0
Identities = 1577/1671 (94%), Gaps = 32/1671 (2%)
Strand=Plus/Plus
Query 1 ACGGCTAAGGA--TCTCTC--GCCCACCATCACCATCTCTCGTTGCAGTTTCTGATTAGA 56
||||| ||||| |||||| |||| ||||||||||||| || |||||||||||||||
Sbjct 1 ACGGCAAAGGATCTCTCTCTTTCCCAGCATCACCATCTCTTGTACCAGTTTCTGATTAGA 60
Query 57 TTCAACAATGAACGGCGCATTAGGTAACTCCTCCGCCTCCGTGAGCGGCGGAGAAGGTGC 116
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 61 TTCAACAATGAACGGCGCATTAGGTAACTCCTCCGCCTCCGTTAGCGGCGGAGAAGGAGC 120
Query 117 CGGAGGACCTGCTCCTTTCTTGGT-AAAGACCTACGAGATGGTCGACGATTCATCAACGG 175
||||||||| || ||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 121 CGGAGGACCAGCGCCTTTCTTGGTGAAA-ACCTACGAGATGGTCGACGATTCATCAACGG 179
Query 176 ACCAGATTGTATCGTGGAGCGCTAACAACAACAGCTTCATCGTTTGGAATCATGCGGAAT 235
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 180 ACCAGATCGTATCGTGGAGCGCTAACAACAACAGCTTCATCGTTTGGAATCATGCCGAAT 239
Query 236 TTTCACGCCTTCTTCTTCCAACCTACTTCAAGCACAATAACTTCTCTTCCTTCATTCGTC 295
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 240 TTTCACGCCTCCTTCTTCCAACCTACTTCAAACACAATAACTTCTCTTCCTTCATTCGTC 299
Query 296 AGCTCAATACCTATGGGTTCAGAAAGATTGATCCCGAGAGGTGGGAATTTTTGAATGATG 355
||||||||||||||||||| || ||||||||||| ||||||||||| |||||||||||||
Sbjct 300 AGCTCAATACCTATGGGTTTAGGAAGATTGATCCAGAGAGGTGGGAGTTTTTGAATGATG 359
Query 356 ATTTTATTAAGGATCAGAAGCATCTTCTCAAGAATATACATAGAAGGAAACCTATACACA 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ATTTTATTAAGGATCAGAAGCATCTTCTCAAGAATATACATAGAAGGAAACCTATACACA 419
Query 416 GCCACAGTCATCCACCTGCTTCGTCGACAGATCAAGAAAGAGCAGTGTTGCAAGAGCAAA 475
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 420 GCCACAGTCATCCACCTGCTTCGTCGACTGATCAAGAAAGAGCAGTGTTGCAAGAGCAAA 479
Query 476 TGGACAAGCTTTCACGTGCA-AAAGCTGCGATTGAAGCTAAGCTTTTAAAGTTCAAACAA 534
|||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||
Sbjct 480 TGGACAAGCTTTCACGTG-AGAAAGCTGCAATTGAAGCTAAGCTTTTAAAGTTCAAACAA 538
Query 535 CAGAAGGCTGTAGCAAAGCATCAGTTTGAGGAAATGACTGAGCATGTTGATGATATGGAG 594
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 539 CAGAAGGTTGTAGCAAAGCATCAGTTTGAAGAAATGACTGAGCATGTTGATGATATGGAG 598
Query 595 AAGAGGCAGAAGAAGCTGCTGAATTTCTTGGAAACGGCAATTCGGAATCCTACTTTTGTT 654
|| ||||||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 599 AATAGGCAGAAGAAGCTGCTGAATTTTTTGGAAACTGCGATTCGGAATCCTACTTTTGTT 658
Query 655 AAGAATTTTGGCC-GTAAAGTCGAGCAATTGGATATTTCAGCTTACAATAAAAAGCGAAG 713
||||||||||| | ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 659 AAGAATTTTGGTAAG-AAAGTCGAGCAGTTGGATATTTCAGCTTACAACAAAAAGCGAAG 717
Query 714 GATCCCTGAAGTTGAGCAATCAAAGCCACCTTCAGAAGATTCTCATCTGGATAATAGCAG 773
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 718 GCTCCCTGAAGTTGAGCAATCAAAGCCACCTTCAGAAGATTCTCATCTGGATAATAGTAG 777
Query 774 TGGTAGCTCGAGACGCGAGTCTGGAAACATTTTCCATCAAAATTTCTCTAATAAATTGCG 833
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 778 TGGTAGCTCGAGACGCGAGTCTGGAAACATTTTTCATCAAAATTTCTCTAATAAATTGCG 837
Query 834 ACTAGAGCTTTCTCCAGCTGTTTCAGATATGAACATGGTTTCACACAGTATACAAAGTTC 893
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 838 ACTAGAGCTTTCTCCAGCTGATTCAGATATGAACATGGTTTCACACAGTATACAAAGTTC 897
Query 894 CAATGAAGAAGGTGCGAGTCCCAAAGGGATACTGTCAGGAGGTGATCCAAACACTACACT 953
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 898 CAATGAAGAAGGTGCGAGTCCCAAAGGGATACTGTCAGGAGGTGATCCAAATACTACACT 957
Query 954 AACAAGAAGAGAAGGCCTACCATTTGCACCTGAAGCACTAGAGCTTGCGGATACCGGGAC 1013
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 958 AACAAAAAGAGAAGGCCTACCATTTGCACCTGAAGCTCTAGAGCTTGCGGATACCGGGAC 1017
Query 1014 ATGCCCGAGGAGATTACTGTTAAATGACAATACAAGAGTGGAGACCTTGCAGCAGAGGCT 1073
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1018 ATGCCCGAGGAGATTACTGTTAAATGATAATACAAGGGTGGAGACCTTGCAGCAGAGGCT 1077
Query 1074 AACTTCTTCAGAGGAGACTGATGGTAGCTTTTCATGTCATTTAAATCTAACCCTGGCTTC 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 AACTTCTTCAGAGGAGACTGATGGTAGCTTTTCATGTCATTTAAATCTAACCCTGGCTTC 1137
Query 1134 TGCTCCATTACCGGAGAAGACCGCTTCGCAGATAGCTAAGACGACTCTTAAAAGTCAGGA 1193
|||||| |||||||| || || ||||| ||||||||||||||||||||||||||||||||
Sbjct 1138 TGCTCCGTTACCGGACAAAACAGCTTCACAGATAGCTAAGACGACTCTTAAAAGTCAGGA 1197
Query 1194 GTTAAACTTCAACTCAATAGAAACAAGTGCAAGTGAGAAAAATCGGGGTAGACAAGAGGT 1253
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1198 GTTAAACTTTAACTCAATAGAAACAAGTGCAAGTGAGAAAAATCGGGGTAGACAAGAGAT 1257
Query 1254 TGCAGTTGGAGGTAGCCAAGCAAATGCAGCTCCTCCAGCAAGAGTGAATGATGTATTCTG 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TGCAGTTGGAGGTAGCCAAGCAAATGCAGCTCCTCCAGCAAGAGTGAATGATGTATTCTG 1317
Query 1314 GGAACAGTTCTTAACAGAAAGGCCGGGGTCTTCAGATAATGAGGAGGCAAGTTCGACTTA 1373
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1318 GGAACAGTTCCTAACAGAAAGGCCAGGGTCTTCAGATAATGAGGAGGCAAGTTCGACTTA 1377
Query 1374 TAGAGGTAACCCAGACGAAGAGCAAGAGGAGAGAAGAAACGGGAATATGATGTCACGTAA 1433
||||||||||||| |||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 1378 TAGAGGTAACCCATACGAAGAGCAAGAGGAGAAAAGAAACGGGAGTATGATGTTACGTAA 1437
Query 1434 TACAAAGAATATCGAGCAGCTGACCTTATAAACTATTTGGACGGTTACATCAACGAGAGT 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 TACAAAGAATATCGAGCAGCTGACCTTATAAACTATTTGGACGGTTACATCAACGAGAGT 1497
Query 1494 ATATGGTCTGTGGTTTTGGTAAGAAGTAAGAACTATGGCTGAGTAAGTAATGAAACATTG 1553
| | ||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 1498 AC--GAACTGTGGTTTTGGTAAGAAGTATG------GG-TGAGTAAGTAATGAAACATTG 1548
Query 1554 GACTGAAAAAGCGTAAGTAGCTTTGTTGTAAA---TT---TA-CA--C-A-ATCAAGTAA 1602
|||||||||||||||||||||||||||||||| || | | | | | |||||||
Sbjct 1549 GACTGAAAAAGCGTAAGTAGCTTTGTTGTAAACACTTGCGTCTCTGTCTACA-CAAGTAA 1607
Query 1603 TTTGACTGTAATTTTAAGTGCATAGGATTTTAAATTGAATAAGCATTTTTT 1653
||||||||||| | |||||| | ||||||| ||||||||||||||||||||
Sbjct 1608 TTTGACTGTAAATGTAAGTGTACAGGATTT-AAATTGAATAAGCATTTTTT 1657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83583907425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5