BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg493518

Length=514
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G13950.1 | Symbols: RALFL31 | ralf-like 31 | chr4:8058072-80...   660    0.0  


> AT4G13950.1 | Symbols: RALFL31 | ralf-like 31 | chr4:8058072-8058675 
REVERSE LENGTH=604
Length=604

 Score =  660 bits (357),  Expect = 0.0
 Identities = 430/464 (93%), Gaps = 10/464 (2%)
 Strand=Plus/Plus

Query  1    TTCTACTTAGAGAC--AGACA-A-AGAGAGATCGCGTCGGCACAATCTGCAATTTTCCAA  56
            |||| |||||||||  ||| | | |||||||||||||||||||||||||||| |||||||
Sbjct  1    TTCTGCTTAGAGACAGAGAAATAGAGAGAGATCGCGTCGGCACAATCTGCAA-TTTCCAA  59

Query  57   CATCGACATGTTTAACTCTATAGCGTTGGTAATTTTCGCCATTCTTTTCCTCTCAATCT-  115
            |||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| 
Sbjct  60   CATCGACATGTTTAACTCTACAGCGTTGGTGATTTTCGCCATTCTTTTCCTCTTAATCTC  119

Query  116  --CCAACGCGTTCCCGATTCCGTCGCCGAACGGAGAGATCGACGCAATGTTAG-TCCGAA  172
              || | ||||||||||||||||| || ||||||||||||||||||||||| | ||||||
Sbjct  120  CGCCGATGCGTTCCCGATTCCGTCTCCCAACGGAGAGATCGACGCAATGTT-GATCCGAA  178

Query  173  ACAGCCTCATCGGAGAAGATGAAGATCTAATGCCAACCGAGATCAGCCGGAGAGTACTGA  232
            ||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  179  ACAGTATCATCGGAGAAGATGAAGATCTAATGCCAACTGAGATCAGCCGGAGAGTACTGA  238

Query  233  TGGCGCAGAAGCGGTACATCGGCTACGAAACCCTAAGGAGAGACATGGTTCCTTGTCAGA  292
            |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  239  TGGCGCAGAAACGGTACATCGGCTACGAAACGCTAAGGAGAGACATGGTTCCTTGTCAGA  298

Query  293  AACCAGGAGCTTCTTACTACGATTGTCGCTCTGGACAAGCTAATTCTTACAACAGAGGCT  352
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  299  AACCAGGAGCTTCTTACTACGATTGTCGCTCTGGACAAGCTAATTCTTACAGCAGAGGCT  358

Query  353  GCGAGACCATTACAAGATGTGCTAGAGACACAAGCGATATCAACACATGAAGGTAAGATC  412
            | || |||||||| ||||| ||||||||||||| ||| ||||||||||||||||||||||
Sbjct  359  GTGACACCATTACCAGATGCGCTAGAGACACAAACGACATCAACACATGAAGGTAAGATC  418

Query  413  CAAGAAATTGCCAAAATTGGAAGTTTTTTAGCAGAGGCAAGTAA  456
            ||||||||||||||||||||||| ||||| || |||||||||||
Sbjct  419  CAAGAAATTGCCAAAATTGGAAGCTTTTTGGCCGAGGCAAGTAA  462



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24564497883


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5