BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493523
Length=1175
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13890.1 | Symbols: SHM5, EDA36, EDA37 | Pyridoxal phosphate... 1711 0.0
AT4G13930.1 | Symbols: SHM4 | serine hydroxymethyltransferase 4... 1358 0.0
> AT4G13890.1 | Symbols: SHM5, EDA36, EDA37 | Pyridoxal phosphate
(PLP)-dependent transferases superfamily protein | chr4:8031972-8033723
REVERSE LENGTH=1592
Length=1592
Score = 1711 bits (926), Expect = 0.0
Identities = 1094/1177 (93%), Gaps = 4/1177 (0%)
Strand=Plus/Plus
Query 1 AGAGATGGAATCAGTCTCTTCTTGGGGAAACACGCCTCTTGTCTCCGTCGATCCCGAGAT 60
|||||||||| |||||| ||||||||||||||||| ||||| || ||||||||| |||||
Sbjct 2 AGAGATGGAACCAGTCTATTCTTGGGGAAACACGCATCTTGACTTCGTCGATCCGGAGAT 61
Query 61 CCACGACCTAATCGAGAAGGAGAAACATCGGCAATGTCGAGGAATCGAACTCATAGCCGC 120
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 62 CTACGACCTAATCGAGAAGGAGAAACATCGTCAATGTCGAGGAATCGAACTCATAGCAGC 121
Query 121 CGAGAATTTCACTTCCTTGGCTGTCATGGAAGCTCTTGGAAG-TGCCTTAACCAACAAAT 179
|||||||||||||||| |||| |||||||||||||| ||||| || ||||||||||||||
Sbjct 122 CGAGAATTTCACTTCCGTGGCCGTCATGGAAGCTCTCGGAAGTTG-CTTAACCAACAAAT 180
Query 180 ACTCGGAAGGTATGCCTGGTAATCGTTACTACGGAGGTACCGAGTTCATCGATGAGATCG 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 ACTCGGAAGGTATGCCTGGTAATCGTTACTACGGAGGTACCGAGTTCATCGATGAGATAG 240
Query 240 AGAGTCTCTGCCGCTCACGCGCTCTCGAGGCTTTCCATTGTGATCCAGAGAAATGGGGCG 299
|||||||||||||||||||| ||||||| || |||||||| ||||||||||||||||||
Sbjct 241 AGAGTCTCTGCCGCTCACGCTCTCTCGAAGCCTTCCATTGCAATCCAGAGAAATGGGGCG 300
Query 300 TTAATGTTCAGCCTTACTCTGGTTCTCCTGCAAACTTCGCCGCCTACACGGCCTTGCTCC 359
|||| |||||||||||||||||||| ||||| || ||||| |||||||| ||||||||||
Sbjct 301 TTAACGTTCAGCCTTACTCTGGTTCCCCTGCGAATTTCGCAGCCTACACCGCCTTGCTCC 360
Query 360 AGCCTCATGATCGTATCATGAGGCTTGATCTGCCTTCAGGTGGTCATCTAACGCATGGTT 419
|||||||||||||||||||| |||||||| |||| |||||||||||| ||||||||||||
Sbjct 361 AGCCTCATGATCGTATCATGGGGCTTGATTTGCCATCAGGTGGTCATATAACGCATGGTT 420
Query 420 ACTATACCTCTGGTGGGAAGAATATATCCGCGACCTCGATCTACTTCGAAAACCTTCTGT 479
|||||| ||||||||||||||| || |||||||||||||||||||| |||||||||| |
Sbjct 421 ACTATAGCTCTGGTGGGAAGAACATCTCCGCGACCTCGATCTACTTTGAAAACCTTCCCT 480
Query 480 ACAAGGTGGATTCCACCACTGGTTACATTGATTACGACAAGCTTGAGGAGAAAGCAATGG 539
||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 481 ACAAGGTGGATTCCAAGACTGGTTACATTGATTACGACAAACTTGAGGAGAAAGCTATGG 540
Query 540 ATTTTAGGCCTAAGTTAATCATCTGTGGAGGCACTTCTTACCCTAGGGAATGGGATTACG 599
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATTTTAGGCCTAAGTTAATTATCTGTGGAGGCACTTCTTACCCTAGGGAATGGGATTACG 600
Query 600 CGAGGTTCAAAGTTGTCGCGGATAAGGTTGGAGCTCTTTTGCTTTGTGATATGGCTCACA 659
|||| |||| | |||||| || |||||||||||| ||||||| |||||||||||||| |
Sbjct 601 CGAGATTCAGGGCTGTCGCCGACAAGGTTGGAGCTTTTTTGCTCTGTGATATGGCTCATA 660
Query 660 TCAGTGGTCTCGTTGCTGCTCAGGAAGCTGCAGACCCGTTCGAGTACTGTGACGTTGTGA 719
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 661 ACAGTGCCCTCGTTGCTGCTCAGGAAGCCGCAGACCCGTTCGAGTACTGTGACGTTGTGA 720
Query 720 CAACCTCAACTCACAAGAGTTTGAGAGGTCCAAGGGCTGGTATGATCTTTTATAGAAAGG 779
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CAACGTCAACTCACAAGAGCTTGAGAGGTCCAAGGGCTGGTATGATCTTTTATAGAAAGG 780
Query 780 GCCCAAAACCAGCCAAGAAGGGCCAACCCGAGGGTGAAGTCTACGATTTTGACaaaaaaa 839
| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 781 GACCAAAACCAGCCAAGAAGGGCCAACCCGAGGGTGAAGTCTACGATTTCGACGCAAAAA 840
Query 840 TCAACTTTGCGGTGTTCCCTGCGCTTCAAAGTGGTCCTCACAATAACAAGATTGGTGCTC 899
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TCAACTCTGCGGTATTCCCTGCGCTTCAAAGTGGTCCTCACAATAACAAGATTGGTGCTC 900
Query 900 TAGCTGTTGCGTTGAAGCAGGCTATGGCTCCTGGGTTCAAGGTCTACGCAAAACAGGTGA 959
||||||||||||||||||||| |||||||||| | ||||| || || |||||||||||||
Sbjct 901 TAGCTGTTGCGTTGAAGCAGGTTATGGCTCCTAGCTTCAAAGTTTATGCAAAACAGGTGA 960
Query 960 AAGCCAATGCTGCTTGCCTTGGAAACTACCTAATGGGA-AAGGGATATTGTATTGTAACC 1018
|||| |||||||||||||||| || ||||||||| | ||||||||| | ||||||||
Sbjct 961 AAGCTAATGCTGCTTGCCTTGCAAGCTACCTAATAA-ATAAGGGATATACTCTTGTAACC 1019
Query 1019 GGTGGAACTGATAACCACCTTGTTCTTTGGGATCTTCGCCCTCTTGGATTGACCGGTAAC 1078
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GATGGAACTGATAACCACCTTATTCTTTGGGATCTTCGCCCTCTTGGATTGACCGGTAAC 1079
Query 1079 AAGGTTGAGAAGGTTAGTGAATTGGGCTACATTACTTTGAACAGGAATGCGGTATTCGGA 1138
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1080 AAGGTTGAGAAGGTTTGTGAATTGTGCTACATTACTTTGAACAGGAATGCGGTATTCGGA 1139
Query 1139 GACACTAGTTTTCTTGCTCCTGGAGGTGTAAGAATCG 1175
|||||||||||||||||||| ||||||||||||||||
Sbjct 1140 GACACTAGTTTTCTTGCTCCCGGAGGTGTAAGAATCG 1176
> AT4G13930.1 | Symbols: SHM4 | serine hydroxymethyltransferase
4 | chr4:8047692-8050106 REVERSE LENGTH=1822
Length=1822
Score = 1358 bits (735), Expect = 0.0
Identities = 1037/1183 (88%), Gaps = 20/1183 (2%)
Strand=Plus/Plus
Query 3 AGATGGAATCAGTCTCTTCTTGGGGAAACACGC-CTCTTGTCTCCGTCGATCCCGAGATC 61
|||||||| |||||||||| ||||| ||||| | |||| |||||||| ||||| ||||||
Sbjct 84 AGATGGAACCAGTCTCTTCATGGGGTAACAC-CTCTCTCGTCTCCGTAGATCCAGAGATC 142
Query 62 CACGACCTAATCGAGAAGGAGAAACATCGGCAATGTCGAGGAATCGAACTCATAGCCGCC 121
||||||||||||||||||||||||| |||||||||||||||||||||||| || || ||
Sbjct 143 CACGACCTAATCGAGAAGGAGAAACGTCGGCAATGTCGAGGAATCGAACTTATCGCTTCC 202
Query 122 GAGAATTTCACTTCCTTGGCTGTCATGGAAGCTCTTGGAAGTGCCTTAACCAACAAATAC 181
||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||||
Sbjct 203 GAGAATTTCACTTCCTTCGCCGTCATCGAAGCTCTCGGAAGTGCCTTAACCAACAAATAC 262
Query 182 TCGGAAGGTATGCCTGGTAATCGTTACTACGGAGGTACCGAGTTCATCGATGAGATCGAG 241
|| |||||||| |||||||||||||| |||||||||| ||| ||||||||||||||||||
Sbjct 263 TCCGAAGGTATTCCTGGTAATCGTTATTACGGAGGTAACGAATTCATCGATGAGATCGAG 322
Query 242 AGTCTCTGCCGCTCACGCGCTCTCGAGGCTTTCCATTGTGATCCAG-AGAAATGGGGCGT 300
| ||| ||||| ||| | |||||||| ||||||||||||||||||| || ||||||||
Sbjct 323 AATCTTTGCCGTTCAAGAGCTCTCGAAGCTTTCCATTGTGATCCAGCAG-CGTGGGGCGT 381
Query 301 TAATGTTCAGCCTTACTCTGGTTCTCCTGCAAACTTCGCCGCCTACACGGCCTTGCTCCA 360
|||||||||||| || ||||| ||||| ||||| ||||| || |||||||| ||||| ||
Sbjct 382 TAATGTTCAGCCGTATTCTGGATCTCCGGCAAATTTCGCTGCTTACACGGCTTTGCTTCA 441
Query 361 GCCTCATGATCGTATCATGAGGCTTGATCTGCCTTCAGGTGGTCATCTAACGCATGGTTA 420
|||||| |||||||||||| |||||||| ||||||||||||||||| | || ||||||||
Sbjct 442 GCCTCACGATCGTATCATGGGGCTTGATTTGCCTTCAGGTGGTCATTTGACTCATGGTTA 501
Query 421 CTATACCTCTGGTGGGAAGAATATATCCGCGACCTCGATCTACTTCGAAAACCTTCTGTA 480
|||||| |||||||| ||||| || || ||||| ||||||||||| || | |||| |||
Sbjct 502 CTATACATCTGGTGGTAAGAAGATCTCTGCGACTTCGATCTACTTTGAGAGTCTTCCGTA 561
Query 481 CAAGGTGGATTCCACCACTGGTTACATTGATTACGACAAGCTTGAGGAGAAAGCAATGGA 540
|||||| ||| |||||||||||||||||||||||| |||||||| ||||| || ||||
Sbjct 562 TAAGGTGAATTTCACCACTGGTTACATTGATTACGATAAGCTTGAAGAGAAGGCGTTGGA 621
Query 541 TTTTAGGCCTAAGTTAATCATCTGTGGAGGCACTTCTTACCCTAGGGAATGGGATTACGC 600
||| ||||||||||| | |||||||| || | | | || |||||||| |||||||||||
Sbjct 622 TTTCAGGCCTAAGTTGCTTATCTGTGGTGGTAGTGCGTATCCTAGGGATTGGGATTACGC 681
Query 601 GAGGTTCAAAGTTGTCGCGGATAAGGTTGGAGCTCTTTTGCTTTGTGATATGGCTCACAT 660
|| || | || | | || ||||||||||||||||||||||||||||| |||||||||||
Sbjct 682 TAGATTTAGAGCTATTGCTGATAAGGTTGGAGCTCTTTTGCTTTGTGACATGGCTCACAT 741
Query 661 CAGTGGTCTCGTTGCTGCTCAGGAAGCTGCAGACCCGTTCGAGTACTGTGACGTTGTGAC 720
||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||
Sbjct 742 CAGTGGTCTCGTTGCTGCTCAGGAAGCTGCAAACCCATTTGAGTACTGTGACGTTGTGAC 801
Query 721 AACCTCAACTCACAAGAGTTTGAGAGGTCCAAGGGCTGGTATGATCTTT-TATAGAAAGG 779
|||| |||| |||||||||||||| |||||||||||||||||||| ||| || || ||||
Sbjct 802 AACCACAACCCACAAGAGTTTGAGGGGTCCAAGGGCTGGTATGAT-TTTCTACAGGAAGG 860
Query 780 GCCCAAAACCAGCCAA-GAAGGGCCAACCCGAGGGTGAAGTCTACGATTTTGACaaaaaa 838
| ||||||||| |||| |||||| ||||||||||||| |||||| |||||||| | |||
Sbjct 861 GTCCAAAACCA-CCAAAGAAGGGTCAACCCGAGGGTGCAGTCTATGATTTTGAGGACAAA 919
Query 839 aTCAACTTTGCGGTGTTCCCTGCGCTTCAAAGTGGTCCTCACAATAACAAGATTGGTGCT 898
||||||||||| || ||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 920 ATCAACTTTGCTGTATTCCCTGCGCTTCAAGGTGGTCCTCACAATCACCAGATTGGTGCT 979
Query 899 CTAGCTGTTGCGTTGAAGCAGGCTA-TGGCTCCTGGGTTCAAGGTCTACGCAAAACAGGT 957
||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||
Sbjct 980 CTAGCTGTTGCGTTGAAGCAGGCTAATA-CTCCTGGGTTCAAGGTCTACGCAAAACAAGT 1038
Query 958 GAAAGCCAATGCTGCTTGCC-TTGGAAACTACCTAATGGGAAAGGGATATT-GTATTGTA 1015
|||||||||||||| ||||| ||||||||||||||||| | ||||| || | |||||
Sbjct 1039 GAAAGCCAATGCTG-TTGCCCTTGGAAACTACCTAATGAGCAAGGGTTACCAG-ATTGTG 1096
Query 1016 ACCGGTGGAACTGATAACCACCTTGTTCTTTGGGATCTTCGCCCTCTTGGATTGACCGGT 1075
||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1097 ACCAATGGAACTGAGAACCACCTTGTTCTCTGGGATCTTCGCCCTCTTGGATTGACCGGA 1156
Query 1076 AACAAGGTTGAGAAGGT-TAGTGAAT-TGGGCTA-CATTACTTTGAACAGGAATGCGGTA 1132
||||||||||||||| | | | || | || || | |||||| ||||||| ||| || |||
Sbjct 1157 AACAAGGTTGAGAAGCTCT-GCGA-TCTGTGC-AGCATTACATTGAACAAGAACGCAGTA 1213
Query 1133 TTCGGAGACACTAGTTTTCTTGCTCCTGGAGGTGTAAGAATCG 1175
|| ||||||| |||| ||||||||||||||||||||||||||
Sbjct 1214 TTTGGAGACAGTAGTGCTCTTGCTCCTGGAGGTGTAAGAATCG 1256
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57680426205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5