BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493524
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13870.2 | Symbols: WRNEXO | Werner syndrome-like exonucleas... 1356 0.0
AT4G13885.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 244 1e-63
> AT4G13870.2 | Symbols: WRNEXO | Werner syndrome-like exonuclease
| chr4:8023319-8025582 REVERSE LENGTH=1151
Length=1151
Score = 1356 bits (734), Expect = 0.0
Identities = 839/888 (94%), Gaps = 14/888 (2%)
Strand=Plus/Plus
Query 1 TaaaaaaaaTGTCTTCGTCAAATTGGATCGACGACGACGCTTTTACAGAGGAAGAGCTTC 60
||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 33 TAAAAGAAATGTCATCGTCAAATTGGAT---CGACGACGCTTTTACAGAGGAAGAGCTTC 89
Query 61 TCGCTATTGACGCCATCGAAGCTTCCTACAATTTCTCCC--T-TTCTTCTTC--C-T-C- 112
||||||| ||||||||||||||||||||||||||||||| | ||||||||| | | |
Sbjct 90 TCGCTATCGACGCCATCGAAGCTTCCTACAATTTCTCCCGTTCTTCTTCTTCTTCTTCCT 149
Query 113 C-GCTTCCCCGACCGTACAAGCTACAACCTCCGGCCATGACCACGAGGAGGATCCAAATC 171
| ||| | ||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 150 CTGCTGCTCCGACCGTACAAGCTACAACCTCCGTCCATGGCCACGAGGAGGATCCAAATC 209
Query 172 AAATCCCCAATAATATCCGTCGCCAATTGCCTCGTTCCATCACTTCTCCTACATCTTATA 231
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 210 AAATCCCCAATAATATCCGTCGCCAATTGCCTCGTTCCATCACTTCTTCTACATCTTATA 269
Query 232 AACGATTTCCTCTCTCTCGTTGCCGTA-CTAGGAATTTTCCAGCAATGAGATTTGGTGGT 290
|||||||||||||||| |||||||| | |||||||||||||||||||||| |||||||||
Sbjct 270 AACGATTTCCTCTCTCCCGTTGCCG-AGCTAGGAATTTTCCAGCAATGAGGTTTGGTGGT 328
Query 291 AGGATTTTGTATAGCAAGACTGCTAGTGAGGTTGATAAGCGAGCAATGCAGCTTCTTAAA 350
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 329 AGGATTTTGTATAGCAAGACTGCTACTGAGGTTGATAAGCGAGCAATGCAGCTTATTAAA 388
Query 351 GTTCTTGATACCAAGAGAAATGAATCTGGAAGAGCTATTGTTGGTTTTGATATTGAGTGG 410
|||||||||||||||||| |||||||||||| |||| ||||||| || ||||||||||||
Sbjct 389 GTTCTTGATACCAAGAGAGATGAATCTGGAATAGCTTTTGTTGGCTTGGATATTGAGTGG 448
Query 411 AGACCAAGTTTTAGAAAAGGTGTTCTCCCGGGGAAGGTTGCAACTGTCCAGATATGTGTA 470
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 449 AGACCAAGTTTTAGAAAAGGTGTTCTCCCGGGGAAGGTTGCGACTGTCCAGATATGTGTA 508
Query 471 GATAATAATTATTGTGATGTTATGCATATTGTTCATTCTGGTATCCCGCAAAGACTCCAA 530
|||| ||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||
Sbjct 509 GATAGTAATTATTGTGATGTTATGCATATTTTTCATTCTGGTATCCCTCAAAGTCTCCAA 568
Query 531 CATCTGATTGAGGATTCAACACTTGTAAAGGTAGGTATTGGAATTGATGGTGACTCTGTG 590
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 CATCTTATTGAAGATTCAACACTTGTAAAGGTAGGTATTGGAATTGATGGTGACTCTGTG 628
Query 591 AAGCTTTTCCATGACTATGGAGTTTCCATCAAAGATGTTGAGGATCTTTCAGATTTAGCC 650
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 629 AAGCTTTTCCATGACTATGGAGTTAGTATCAAAGATGTTGAGGATCTTTCAGATTTAGCC 688
Query 651 AACCGAAAAATTGGTGGAGATAAAAAATGGGGCCTTGCCTCACTAACTGAGACACTTGTT 710
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 AACCAAAAAATTGGTGGAGATAAAAAATGGGGCCTTGCCTCACTAACTGAGACACTTGTT 748
Query 711 TGCAAAGAGCTCCTGAAGCCAAATAGAATCAGGCTTGGGAATTGGGAGGTTTATCCTCTA 770
||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||
Sbjct 749 TGCAAAGAGCTCCTGAAGCCAAACAGAATCAGGCTTGGGAACTGGGAGTTTTATCCTCTG 808
Query 771 TCAAAGCAGCAGTTACAATACGCAGCAACGGATGCTTATGCTTCATGGCATCTTTACCAG 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 809 TCAAAGCAGCAGTTACAATACGCAGCAACGGATGCTTATGCTTCATGGCATCTTTACAAG 868
Query 831 GTTCTTAAGGACCTTCCTGATGCTGTCAATGGCTCATAACGTGGAGGA 878
|||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 869 GTTCTTAAGGACCTTCCTGATGCTGTCAGTGGCTCATAACGTGAAGGA 916
> AT4G13885.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr4:8028911-8030754 REVERSE
LENGTH=792
Length=792
Score = 244 bits (132), Expect = 1e-63
Identities = 144/150 (96%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 720 CTCCTGAAGCCAAATAGAATCAGGCTTGGGAATTGGGAGGTTTATCCTCTATCAAAGCAG 779
||| |||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 643 CTCTTGAAGCCAAACAGAATCAGGCTTGGGAACTGGGAGGTTCATCCTCTATCAAAGCAG 702
Query 780 CAGTTACAATACGCAGCAACGGATGCTTATGCTTCATGGCATCTTTACCAGGTTCTTAAG 839
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 703 CAGTTACAATACGCAGCAACGGATGCTTATGCTTCATGGCATCTTCACCAGGTTCTTAAG 762
Query 840 GACCTTCCTGATGCTGTCAATGGCTCATAA 869
||||||||||||||||||| ||||||||||
Sbjct 763 GACCTTCCTGATGCTGTCAGTGGCTCATAA 792
Score = 161 bits (87), Expect = 1e-38
Identities = 89/90 (99%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 522 AGACTCCAACATCTGATTGAGGATTCAACACTTGTAAAGGTAGGTATTGGAATTGATGGT 581
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 AGACTCCAACATCTTATTGAGGATTCAACACTTGTAAAGGTAGGTATTGGAATTGATGGT 612
Query 582 GACTCTGTGAAGCTTTTCCATGACTATGGA 611
||||||||||||||||||||||||||||||
Sbjct 613 GACTCTGTGAAGCTTTTCCATGACTATGGA 642
Score = 78.7 bits (42), Expect = 1e-13
Identities = 44/45 (98%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 428 AGGTGTTCTCCCGGGGAAGGTTGCAACTGTCCAGATATGTGTAGA 472
||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 511 AGGTGTTCTCCTGGGGAAGGTTGCAACTGTCCAGATATGTGTAGA 555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50736488470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5