BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493528
Length=652
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA... 857 0.0
> AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-binding
protein 2 | chr4:8020952-8022260 FORWARD LENGTH=741
Length=741
Score = 857 bits (464), Expect = 0.0
Identities = 603/668 (90%), Gaps = 18/668 (3%)
Strand=Plus/Plus
Query 2 TTCATTCTTCATTTCCTCTGCCTCTTTCTCAGATCACAAAACCCTAATTTCGAAGCTTTA 61
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 TTCATTCTACATTTCCTCTGCCTCTTTCTCAGATCACAAAACCCTAATTTCGAATCTTTA 60
Query 62 TTCATCAGAATGGCTTTCTGCAACAAACTCGGTGGTCTGTTGAGACAGAACATTACTCCT 121
||| |||||||||||||||| ||||||||||||||||| ||||||||||||||| || ||
Sbjct 61 TTCTTCAGAATGGCTTTCTGTAACAAACTCGGTGGTCTATTGAGACAGAACATTTCTTCT 120
Query 122 AACGGAAATGTTCCGGTTACGTCTATGCTCGGATCTCTCCGGTTGATGTCTACCAAGCTT 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AACGGAAATGTTCCGGTTACGTCTATGCTCGGATCTCTCCGGTTGATGTCTACCAAGCTT 180
Query 182 TTCGTCGGAGGTCTTTCATGGGGAACTGATGAC-CAGTCCTTGAGGGATGCTTTTGCTCA 240
||| |||||||||| ||||||||||| |||||| || ||||| |||||||||||||||||
Sbjct 181 TTCATCGGAGGTCTCTCATGGGGAACCGATGACGCA-TCCTTAAGGGATGCTTTTGCTCA 239
Query 241 CTTCGGTGAAGTTGTTGATGCTAAAGTCATCGTAGATAGAGAGACGGGAAGATCGAGGGG 300
||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||| |||||
Sbjct 240 CTTCGGTGACGTTGTTGATGCTAAAGTTATCGTTGATAGAGAGACAGGAAGATCAAGGGG 299
Query 301 ATTTGGATTTGTCAACTTCAATGACGAGAGTGCTGCATCTGCTGCCATTTCAGAGATGGA 360
||||||||||||||||||||||| ||| |||||||| |||||||||| |||||||||||
Sbjct 300 GTTTGGATTTGTCAACTTCAATGATGAGGGTGCTGCAACTGCTGCCATATCAGAGATGGA 359
Query 361 CGGAAAGGATCTGAATGGTCGTAACATTCGAGTGAATGTTGCTAATGAAAGACCAAGTGC 420
||||||||| |||||||||||| |||| ||||||||| ||||||||| |||||||||||
Sbjct 360 CGGAAAGGAACTGAATGGTCGTCACATCCGAGTGAATCCTGCTAATGATAGACCAAGTGC 419
Query 421 TCCTCGGGCTTACGGAggtggtggtggttacagtggtggc--t--a--c-a-gt-ggagg 471
||| |||||||| |||||||||||||| ||||||||||| | | | | | |||||
Sbjct 420 TCCACGGGCTTATGGAGGTGGTGGTGGATACAGTGGTGGAGGTGGAGGCTACGGAGGAGG 479
Query 472 tggtggtggctac--agt-ggtggtggcggctacggaggaggtggtggcgatggtggtgg 528
||||||||| ||| || || ||||| ||||| ||||||||||||| | |||||||||
Sbjct 480 TGGTGGTGGGTACGGAGGAGGAGGTGGTGGCTATGGAGGAGGTGGTGATGGTGGTGGTGG 539
Query 529 tTACTAAACGGAG-AGTTGCTTGTGAAGAAGA-G--TTGATGGTTCTGTTTAGTTGGTTT 584
|| |||||| ||| || ||||||||||||||| | || |||||||||||||||||||||
Sbjct 540 TTTCTAAACAGAGGAGGTGCTTGTGAAGAAGAAGAGTTAATGGTTCTGTTTAGTTGGTTT 599
Query 585 CTTCAATTGAATCTTATGTTAGTATAAAACCTGAATGGGATTTGCTGAAAACTCGTTACT 644
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 600 CTTCTATTGAATCTTATGTTAGTACAAAACCTGAATGGGATTTGCTGAAAACTCTTTACT 659
Query 645 Cttttttt 652
||||||||
Sbjct 660 CTTTTTTT 667
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31496810169
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5