BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493531
Length=1545
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13840.1 | Symbols: | HXXXD-type acyl-transferase family pr... 1908 0.0
> AT4G13840.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr4:8013893-8016486 REVERSE LENGTH=1642
Length=1642
Score = 1908 bits (1033), Expect = 0.0
Identities = 1302/1427 (91%), Gaps = 38/1427 (3%)
Strand=Plus/Plus
Query 1 AGAGAGAGAGATAAATGTCCAAACAAAGG--C----AACTTT-TCATA-T-AAttt--tt 49
|||||||||||||||||||||| |||||| | || ||| | || | ||||| ||
Sbjct 27 AGAGAGAGAGATAAATGTCCAAGCAAAGGTTCATATAATTTTATGTTATTAAATTTGCTT 86
Query 50 tttCTTTGTTGAAGTGTTACATACATCGATCGACTTGTTAACTTCAAAGATCACGTAGTA 109
||| |||||| |||||||||||||||||||||||||||| | ||| | | | | | |
Sbjct 87 TTTTTTTGTTAAAGTGTTACATACATCGATCGACTTGTT-AGTTC--A-A--A-G-A--A 136
Query 110 TCAGTCCAACTCCACTGAGTCATCATGGGTCGATCTCTAGAACGGGGACAGGGACAAGGT 169
||||| |||||||||||| ||||||||||||||||| ||||| |||||||||||| |||
Sbjct 137 TCAGTTTAACTCCACTGAGCCATCATGGGTCGATCTCAAGAACAGGGACAGGGACAGGGT 196
Query 170 CCGCTTCACAGCATCCGGTTATCGACCGTGGGTGCGATCAGGCCGACAGAGACCGGTACG 229
||| |||||||||| ||| |||| ||||| ||||||| | ||||||||||||| ||||||
Sbjct 197 CCGGTTCACAGCATTCGGCTATCTACCGTAGGTGCGACCCGGCCGACAGAGACGGGTACG 256
Query 230 ACCCACGAACCAACCGGTTTAGACCTAGCCATGAAGCTCCACTACCTCAAGGCGGCTTAC 289
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 257 ACCCACGAACCAACCGGTTTAGACCTAGCCATGAAGCTCCACTACCTCAAGGCGGCATAC 316
Query 290 ATTTACTCAGCCGAGACAGCACGTGACTTAACCGTGAGACACCTGAAGGAGGCCATGTTC 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 ATTTACTCAGCCGAGACAGCACGTGACTTAACCGTGAGACACCTGAAGGAGGCCATGTTC 376
Query 350 ATGTTGTTCGACCAGATAGCTTGGACCACAGGCAGGTTCTCACGGAGAGACTCCGGCCGT 409
||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||
Sbjct 377 ATGTTGTTCGACCAGATCGCTTGGACCACAGGCAGGTTCTCAAGGAGAGACTCGGGCCGT 436
Query 410 CCGTACATCAAGTGCAACGACTGCGGCACGCGTTTTGTGGAAGGTCAATGCAATCTCACT 469
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 437 CCGTACATCAAGTGCAACGACTGCGGCACACGTTTCGTGGAAGGTCAATGCAATCTCACT 496
Query 470 GTCGAAGAGTGGCTCAGTAAACCGGACCGGTCAGTTGATGAGTTTCTGATTTACCATCAA 529
|| || |||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 497 GTGGAGGAGTGGCTCAGTAAACCGGACCGGTCAGTTGATGAGTTTCTGGTTTATCATCAT 556
Query 530 CCTATTGGACCGGAGTTGACGTTCTCACCTTTGATCTATGTTCAGATGATCCGGTTTAAA 589
|||||||||||||| ||||||||||| ||||||||||| |||||||||| ||||||||||
Sbjct 557 CCTATTGGACCGGAATTGACGTTCTCTCCTTTGATCTACGTTCAGATGACCCGGTTTAAA 616
Query 590 TGCGGAGGATTAGGTTTGGGCCTAAGCTGGGCCAATATAATAGGAGACTCATTCTCTCTA 649
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 617 TGCGGAGGATTAGGGTTGGGCCTAAGCTGGGCCAATATAATAGGAGACGCATTCTCTCTG 676
Query 650 TTCTATGCCTTCAACTTATGGGCTAAG-CTCATTACCGGCGAAAAGATTCATGTCCCAAC 708
||||||||||||||||||||||||||| | ||||||||| ||||||||| ||| ||||||
Sbjct 677 TTCTATGCCTTCAACTTATGGGCTAAGGC-CATTACCGGAGAAAAGATTTATGCCCCAAC 735
Query 709 A-CTC--TCTA-AGGGAGACAGAAGGTTCCAAAGTCCAAACCCGACGGTTAAAGACCCGG 764
| | | |||| ||| ||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct 736 AACACCCTCTATAGG-AGAGAGAAGGTTCCAAAGCCCAAACCCGACGGTTAAAGATCCGG 794
Query 765 TTTCAATCAAACGGGTCGA-CCCGGTTGGAGATCTCTGGGTCACTCCAAACGACAAGAAA 823
||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 795 TTTCAATTAAACGGGTCGAACCCG-TTGGAGATCTCTGGGTCACTCCAAACGACAAGAAA 853
Query 824 ATGGCGAATTACTGTTTCAAAATCGTC-GTCGCCGATCAGATA-CAACCACATTTTCCGG 881
||||||||||||||||||| || || ||||||||||||||| || |||||||||||||
Sbjct 854 TTGGCGAATTACTGTTTCAATCTC-TCAGTCGCCGATCAGATATCA-CCACATTTTCCGG 911
Query 882 CGAAGGGAGCTGA-TCCGATTCCGGTGTTCGAGATTCCCTCCGGGATCATTTGGAAATGC 940
||||||||| ||| || |||||||||||||||||||| | |||| ||||| |||||||||
Sbjct 912 CGAAGGGAGATGACTC-GATTCCGGTGTTCGAGATTCTCGCCGGAATCATATGGAAATGC 970
Query 941 ATAGCTAAGGTTAGGGAAGAGCCAAAGCCTGTGACCGTTACGATCATCAAAAAGGATCCG 1000
|||||||| ||||||| ||||||||||||||| || ||||||||||| ||||| ||||||
Sbjct 971 ATAGCTAAAGTTAGGGTAGAGCCAAAGCCTGTAACGGTTACGATCATTAAAAAAGATCCG 1030
Query 1001 AACGATCTGAAACCTAACAAGATTCGCAACAGTCAGGTGATAAGTTCAGTTCAA-GTTGA 1059
||||||||||||| ||| |||||| |||||||||||||| || ||||| | || ||
Sbjct 1031 AACGATCTGAAACTTAATGCGATTCGAAACAGTCAGGTGATCAGCTCAGTG-AGCGTGGA 1089
Query 1060 TTTTCCGGTGGCAGATGCGACGGTGGAGGAATTGGTGAAAGCTATGGCGGAAGCGAAGGA 1119
|||||||||||| || ||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1090 TTTTCCGGTGGCGGAAGCGACGGTGGAGGAATTAGTGAAAGCTATGGGGGAAGCGAAGGA 1149
Query 1120 TGAGAGAAGTGGAATTGAGGAGATCGGAGAGAGTTGTGATGGGAATTTGGATTTTGTTGT 1179
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1150 TGAGAGATGTGGAATTGAGGAGATCGGAGAGAGTTGCGATGGGAATTTGGATTTTGTTGT 1209
Query 1180 TTATGGTGCGAAATTGACGTTTTTGGATCTGAGTGGTGAGGATTTGTATGAGGCGAAAGT 1239
|||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1210 TTATGGAGCGAAATTGACGTTTCTGGATCTGACTGGTGAGGATTTGTATGAGGCGAAAGT 1269
Query 1240 GATGGGGAAGTCGCCGGAGTCGGTTTATTGTAATGTTGAGGGGGTTGGGGAGGAAGGATT 1299
|||||||||||||||||||||||||||||||||||| |||||| | |||||||| |||||
Sbjct 1270 GATGGGGAAGTCGCCGGAGTCGGTTTATTGTAATGTGGAGGGGATAGGGGAGGAGGGATT 1329
Query 1300 GGTGGTTGTTTACGCGGCGGCGAAATCGGAGGAGAGGATGGTGACGGTGACGTTGCCGGA 1359
||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||
Sbjct 1330 GGTGGTTGTTTACGCGGCGGCGAAATCGGAGGAGAGGGTTGTGACGGTTACGTTGCCGGA 1389
Query 1360 GGAAGAGATGGAGAGGGTAAAATTGGAATTTAAGAAGTTTGGTTTGA 1406
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1390 GGAAGAGATGGAGAGGGTAAAATTGGAATTTAAGAAGTTTGGTTTGA 1436
Score = 106 bits (57), Expect = 7e-22
Identities = 78/88 (89%), Gaps = 1/88 (1%)
Strand=Plus/Plus
Query 1459 aaaaaaaaCAGTAAAGTTTCTGGTGATTTTATTTATCTCTGTG-TTCTGTTGGATTGTAA 1517
|||||||| ||||||||||| | || |||||| ||| | | || || |||||||||||||
Sbjct 1535 AAAAAAAAAAGTAAAGTTTCCGTTGGTTTTATGTATGTTTATGTTTTTGTTGGATTGTAA 1594
Query 1518 TTTGTAACGTTGTTGTAAAATTAAATAA 1545
||||||||||||||||||||||||||||
Sbjct 1595 TTTGTAACGTTGTTGTAAAATTAAATAA 1622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76254627855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5