BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493532
Length=811
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13830.2 | Symbols: J20 | DNAJ-like 20 | chr4:8011424-801278... 1140 0.0
> AT4G13830.2 | Symbols: J20 | DNAJ-like 20 | chr4:8011424-8012780
FORWARD LENGTH=891
Length=891
Score = 1140 bits (617), Expect = 0.0
Identities = 725/777 (93%), Gaps = 7/777 (1%)
Strand=Plus/Plus
Query 10 TACACATTACC-ATTCCCATATTaaaatccacaaatctcaaaaccccaaaa-acccaaac 67
||||||||||| |||| |||||||||||||||||| |||||| |||||||| | |||||
Sbjct 19 TACACATTACCAATTCTCATATTAAAATCCACAAAACTCAAATCCCCAAAATAAACAAAC 78
Query 68 cctaaaa-tcgaaaacaatgaaatgttacaaaaGCTCATCAATTCTCTCAACCAATCACC 126
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 79 CCTAAAATTC-AAAACAATGAAATGTTACAAAAGCTCATCAATTCTCTCAACCAATCACC 137
Query 127 ATCCATTCTTCTACAAACAACAACCAATCTCCTCTCTTCAACCATCTTCCTTCCCATCAA 186
| |||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||
Sbjct 138 ACCCATTCTTCTACAAACAACAACCAATCTCCTCTCTTCAACCAACTTCAATCCCAACAA 197
Query 187 CTCTCTCTTACCCGACCCGAACCCGCTTCTCCTCCACCCGGATCCAATCTCGACTAACCC 246
|| |||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 198 CTATCTCTTACCCAACCCGAACCCGATTCTCCTCCACCCGGATCCAATCTCGATTAACCC 257
Query 247 ACGACGATCCCGTAAAACAATCGGAAGACTTATCCTTCTACGATCTTCTCGGCGTCACCG 306
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 ACGACGATCCAGTAAAACAATCGGAAGACTTATCCTTCTACGATCTTCTCGGCGTCACCG 317
Query 307 AATCAGTCACACTCCCAGAAATCAAACAAGCTTATAAACAACTTGCTCGTAAATATCACC 366
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 318 AATCAGTCACACTCCCAGAAATCAAACAAGCTTATAAACAACTAGCTCGAAAATATCACC 377
Query 367 CCGATGTTTCTCCTCCGGATCGTGTCGAAGAATACACAGATCGGTTTATTAGAGTTCAAG 426
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 378 CCGATGTTTCTCCTCCGGATCGTGTCGAAGAATACACAGATCGGTTTATTCGTGTTCAAG 437
Query 427 AAGCTTACGAAACTCTCTCCGATCCTCGTCGGAGAGTTTTATATGATCGTGATTTGTCTA 486
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 438 AAGCTTACGAAACTCTCTCCGATCCTCGCCGGAGAGTTTTATATGACCGTGATTTGTCTA 497
Query 487 TGGGGTTTTCGTTTTCCTTCTCCGGTAAACGCCGGAACCGTTACGATGAGGAAGTGGTGG 546
|||||||||| ||||| ||||||||| ||||| ||||||||||||| ||||||||||||
Sbjct 498 TGGGGTTTTCTTTTTCTTTCTCCGGTCGACGCCAGAACCGTTACGATCAGGAAGTGGTGG 557
Query 547 AAGAGAAGAGTGAGTGGAAGGCAAAATGGCAAACGCAGCTCTCAGGGCTAAGGAGAAGAA 606
||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||
Sbjct 558 AAGAGAAGAGTGAGTGGAAAGCAAAATGGCAAACTCAGCTCTCAGGGTTAAGGAGAAGAA 617
Query 607 GCAATCAGAAAGACAATAACTCAATGTCTTGGGCTGCTAGAATGCGCCGTCAACAACAAG 666
||||||||||||| |||||| | |||||||||||||| |||||||| |||||||||||||
Sbjct 618 GCAATCAGAAAGATAATAACACGATGTCTTGGGCTGCAAGAATGCGTCGTCAACAACAAG 677
Query 667 ATTCCTCTTAACACACAACATC-ATGTCTTTAGCCTCCTTACGTATAGTCTTTTAATTGT 725
| || |||||||| || ||||| | ||||||||||| ||| ||||||||||||||||||
Sbjct 678 AATCTTCTTAACATACGACATCGA-GTCTTTAGCCTTGTTATGTATAGTCTTTTAATTGT 736
Query 726 TTGTGTGTAATATAGAAAGCATAGCATCAATAACA-AGAAACTTTGTATATATGTAA 781
|||||||||||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct 737 TTGTGTGTAATATAGAAAGCATAGCATCAATACCCCAGCAACTTTGTATATATGTAA 793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39484039542
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5