BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg493535

Length=502
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G13790.1 | Symbols:  | SAUR-like auxin-responsive protein fa...   684    0.0  


> AT4G13790.1 | Symbols:  | SAUR-like auxin-responsive protein 
family  | chr4:7999714-8000222 REVERSE LENGTH=509
Length=509

 Score =  684 bits (370),  Expect = 0.0
 Identities = 437/468 (93%), Gaps = 10/468 (2%)
 Strand=Plus/Plus

Query  35   AACTGTAGCGATTAATTCAAAGCTTTTGTTTTTTGTTTCTAATACTCGAAATGGCATTCT  94
            |||| |||| ||||||||||||  ||| |||||| |||||||||||||||||||| ||||
Sbjct  52   AACTTTAGCCATTAATTCAAAG--TTT-TTTTTTCTTTCTAATACTCGAAATGGCTTTCT  108

Query  95   TAAGGAGtttttttGCTACCAAGCAAATCATTCGCCGGTCTTTTACTACGGAATCATCAT  154
            ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct  109  TAAGGAGTTTTTTCGCTACCAAGCATATCATTCGCCGGTCTTTTACTACGGAATCATTAT  168

Query  155  CAACGCCCAAAGGGTTCTTCGCTGTGTATGTTGGAGAAAACCTGAAGAAGAAGAGGTTTC  214
            ||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| | ||
Sbjct  169  CAACGCCTAAAGGGTTCTTTGCTGTGTATGTTGGAGAAAATCTGAAGAAGAAGAGATATC  228

Query  215  TTGTTCCGGTTTGTTACTTGAACAAGCCATCTTTCCAAGCTTTGCTTAGGAAAGCAGAAG  274
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  229  TTGTTCCGGTTTGTTACTTGAACAAGCCATCTTTCCAAGCTTTGCTTAGGAAAGCAGAAG  288

Query  275  AAGAGTTCGGTTTTGATCATCCAACTGGTGGTTTGAGTTTACCATGCGACGAAGCTTTCT  334
            |||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||
Sbjct  289  AAGAGTTCGGTTTTAATCATCCAACGGGCGGTTTGAGTTTACCATGCGACGAAGCTTTCT  348

Query  335  TCTTCATTGTCACTTCTCAGATTTGTTAAGCCCATACAATAATTAAAGATCtttttttAC  394
            |||||| |||||||||||||||| ||||| |||||||||||||||||| |||||||| ||
Sbjct  349  TCTTCACTGTCACTTCTCAGATTCGTTAATCCCATACAATAATTAAAG-TCTTTTTT-AC  406

Query  395  ATTCTCTTATTTATAGAAGAAAATACACATTGTAAATATTACACTTTTATATACATACTG  454
            |||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||
Sbjct  407  ATTCTCTTATTTATAGAAGAAAATACACATTGTACATACTATACTTTTATATACATACTG  466

Query  455  ATGAGAAGAATAATTCAACGAACATCATATCTTTTGCTTTCGTTTTCT  502
            |||||||||||||||||||||||||| | | ||  |||||||||||||
Sbjct  467  ATGAGAAGAATAATTCAACGAACATC-T-T-TT--GCTTTCGTTTTCT  509



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23961688119


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5