BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493536
Length=2691
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13780.1 | Symbols: | methionine--tRNA ligase, putative / m... 4423 0.0
AT5G02680.1 | Symbols: | LOCATED IN: endomembrane system; EXPR... 174 3e-42
> AT4G13780.1 | Symbols: | methionine--tRNA ligase, putative /
methionyl-tRNA synthetase, putative / MetRS, putative | chr4:7993155-7998515
REVERSE LENGTH=2687
Length=2687
Score = 4423 bits (2395), Expect = 0.0
Identities = 2597/2694 (96%), Gaps = 16/2694 (1%)
Strand=Plus/Plus
Query 1 AGCCTCTCTGCTTCGTCTTTCTCCTCTATCTCTGACTCTTCGCGAAAACCCTAATTAGCT 60
||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 AGCTTCTCTGATTCGTCTTTCTCCTCTGTCTCTGACTCTTCGCGAAAACCCTAATTAGCT 60
Query 61 TTGTGGTCTTGTTGTTTTCGCCATGGAAGACGACGGCAAGAGCAGCCCCAAGTTACCGAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGTGGTCTTGTTGTTTTCGCCATGGAAGACGACGGCAAGAGCAGCCCCAAGTTACCGAT 120
Query 121 CCCTGGCAAGAGAAATATATTAATCACCAGTGCTTTGCCTTACGTCAACAACGTTCCTCA 180
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCCTGGAAAGAGAAATATACTAATCACCAGTGCTTTGCCTTACGTCAACAACGTTCCTCA 180
Query 181 TCTCGGAAACATCATCGGATGTGTTCTTAGTGCTGATGTGTATGCTAGATACTGTCGTCT 240
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 181 TCTCGGAAACATCATCGGATGTGTTCTGAGCGCTGATGTGTATGCTAGATACTGTCGTCT 240
Query 241 CCGTGGCTATAATGCGATATATATATGTGGAACCGATGAATATGGGACTGCAACTGAGAC 300
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCGTGGCTATAATGCGATTTACATATGTGGAACCGATGAATATGGGACTGCAACTGAGAC 300
Query 301 CAAAGCTTTGGAGGAGAATTGCACTCCCAAGGAAATCTGTGACAAGTACCATGCCATTCA 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 301 CAAAGCTTTGGAGGAGAATTGCACCCCCAAGGAAATCTGTGACAAGTACCATGCCATTCA 360
Query 361 TAAAGAAGTTTATGACTGGTTTGATATAAGTTTTGACAAGTTTGGGCGAACTTCAACTCC 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 361 TAAAGAAGTTTATGACTGGTTTGGTATAAGTTTTGACAAGTTTGGGCGAACTTCAACTCC 420
Query 421 AGAACAGACTGAAGTGTGTCAAGCAATTTTCAAGAAGTTGTGGGATAATAAGTGGCTTTC 480
|||||||||||| ||||| |||||||||||||| ||||||||||| || |||||||||||
Sbjct 421 AGAACAGACTGAGGTGTGCCAAGCAATTTTCAACAAGTTGTGGGACAACAAGTGGCTTTC 480
Query 481 AGAGAACACCATGCAGCAGCTTTACTGCGATACATGCAAGAAGTTCTTAGCTGACCGGCT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGAGAACACCATGCAGCAGCTTTACTGCGATACATGCAAGAAGTTCTTAGCTGACCGGCT 540
Query 541 TGTTGAGGGTTCTTGTCCGTTTGAAGGATGTAATTATGATTCTGCTCGTGGAGATCAGTG 600
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGTTGAGGGTTCTTGTCCGTTCGAAGGATGTAATTATGATTCTGCTCGTGGAGATCAGTG 600
Query 601 CGAAAAATGTGGAAAGCTCCTGAATCCTACTGAACTTAAAGATCCGAAGTGCAAGGTCTG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CGAAAAATGTGGAAAGCTCCTGAATCCTACTGAACTTAAAGATCCGAAGTGCAAGGTCTG 660
Query 661 TCAAAACACACCCCGAATTCGCGACACAGACCACCTGTTTATTGAGCTTCCGTTACTGAA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCAAAACACACCCCGAATTCGCGACACAGACCACCTGTTTATTGAGCTTCCGTTACTGAA 720
Query 721 AGATAGGTTGGAAAAGTATATTAACGAGACCTCTGTTACTGGATCTTGGAGTCAAAATGC 780
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 721 AGATAGGTTGGAAGCGTATATTAAAAAGACCTCTGTTACTGGATCTTGGAGTCAAAATGC 780
Query 781 TATTCAAACGACAAATGCATGGCTTAGGGATGGGCTTAGACAGAGATGCATTACAAGGGA 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 781 TATTCAAACGACAAATGCATGGCTTAGGGATGGGCTTAGACAGAGATGCATTACGAGGGA 840
Query 841 TCTTAAGTGGGGAGTGCCTGTCCCACATGAGAAATATAAGGATAAAGTCTTCTATGTTTG 900
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 841 TCTTAAGTGGGGAGTGCCTGTCCCACATGAGAAATACAAGGACAAAGTCTTCTATGTTTG 900
Query 901 GTTTGATGCTCCTATTGGATACGTCTCAATAACGTCATGCTACACATCTGAATGGGAGAA 960
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 901 GTTTGATGCTCCTATTGGATACGTCTCAATAACGTCTTGCTACACATCTGAATGGGAGAA 960
Query 961 GTGGTGGAAGAATCCTGAGAATGTGGAGCTTTATCAGTTTATGGGGAAAGACAATGTGCC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GTGGTGGAAGAATCCTGAGAATGTGGAGCTTTATCAGTTTATGGGGAAAGACAATGTGCC 1020
Query 1021 ATTTCACACTGTGATGTTTCCCTCTACCCAGCTTGGAACTGGGGAAAATTGGACACTGAT 1080
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1021 ATTTCACACTGTGATGTTTCCCTCTACCCAGCTTGGAACTGAGGAAAATTGGACACTCAT 1080
Query 1081 GAAGACAATCAGTGTGACTGAATATTTAAACTACGAAGACGGAAAGTTCTCCAAGAGTAA 1140
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1081 GAAGACAATCAGTGTGACTGAATATTTAAACTATGAAGACGGAAAGTTCTCCAAGAGTAA 1140
Query 1141 AGGTGTTGGAGTGTTTGGTAATGATGTAAAAGATACAAATATACCTGTCGAAGTATGGAG 1200
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1141 AGGTGTTGGAGTGTTTGGTAATGATGTAAAAGATACAAATATACCTGTCGAAGTGTGGAG 1200
Query 1201 ATACTACTTGCTGACCAACAGGCCTGAGGTGTCTGACACATCATTTTCATGGACTGATTT 1260
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1201 ATACTACTTGCTGACCAACAGGCCTGAGGTGTCTGACACATCGTTTTCATGGACTGATTT 1260
Query 1261 GCAAGCAAAACTGAATGGCGAGTTGCTGAACAACCTAGGCAACTTTGTTAATCGAGTTCT 1320
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1261 GCAAGCAAAACTGAATGGCGAGTTGCTGAGCAACCTAGGCAACTTTGTTAATCGAGTTCT 1320
Query 1321 GAGTTTTATAGCAAAGCCTAATAATGCAGGTTATGGGTCTGTCATTCCTGATGCTCATGA 1380
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1321 GAGTTTTATAGCAAAGCCTGATAATGCAGGTTACGGGTCTGTCATTCCTGATGCTCATGA 1380
Query 1381 TGCTGAATCTCATCCTTTAACAAAATCACTGGCGGAAAAGGTTGAAAAGTTTGTGGCAGA 1440
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 TGCTGAATCTCATTCTTTAACAAAATCACTGGCGGAAAAGGTTGAAAAGTTTGTGGCAGA 1440
Query 1441 GTATGTTGAAGCCATGGAAAAGGTTAAGCTCAAACAGGGGCTGAAAACTGCTATGCTGAT 1500
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1441 GTATGTTGAAGCCATGGAAAAGGTTAAGCTCAAGCAGGGACTGAAAACTGCTATGCTGAT 1500
Query 1501 TTCAAGCGAAGGGAACTTTTACTTGCAGACAAGCCAATTTTGGAAACTTTACAAGGAAGA 1560
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1501 TTCAAGCGAAGGGAACTATTACTTGCAGGCAAGCCAATTTTGGAAACTTTACAAGGAAGA 1560
Query 1561 TAAACCTTTGTGTGCAATTGTTATAAGAACTGCTGCTGGTTTAGTACACCTTCTTGCTCA 1620
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 TAAACCTTTGTGTGCAGTTGTTATAAGAACTGCTGCTGGTTTAGTACACCTTCTTGCTCA 1620
Query 1621 GTTGTTAGAACCTTTCATGCCATCCTTTTCTTGTGAGGTATTTAAACAGCTAAATTTGCC 1680
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 ATTGTTAGAACCTTTCATGCCATCCTTTTCTTGTGAGGTATTTAAACAGCTAAATTTGCC 1680
Query 1681 TCCACAATTTTCTCTCTCCGACGAGAGGGGAGAGGTATTACTAGCAAGTAGACCATGGGA 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 TCCACAATTTTCTCTCTCCGACGAGAGGGGAGAGGTATTACTAGCAAGTAGACCATGGGA 1740
Query 1741 GATTCTGCCTCCTAGCCACAGGATAGGCACCACTCAACCTTTGTTCAAGGAGTTGGAAAA 1800
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1741 TATTCTGCCTCCTAGCCACAGGATAGGCACCCCTCAACCTTTGTTCAAGGAGTTGGAAAA 1800
Query 1801 CGATGAAGTGACACAGTACAGAGAAAAGTTTGCTGGAAGTCAGGCTGATAGACGTGCTAG 1860
||| |||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1801 CGACGAAGTGGCACGGTACAGAGAAAAGTTTGCTGGAAGTCAGTCTGATAGACGTGCTAG 1860
Query 1861 GGATGAAGCAGCAAATTTGACAGATCAGCTTAATAAAACAAAACTTTCAGATGCCAAGAA 1920
||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct 1861 GGATGAAGCAGCAAATTTGGCGGATCAACTTAATAAAACAAAACTTTCAGATGCCAAGAA 1920
Query 1921 ACAAAAGGCATCATCATCAAAAAGCGGAGGAAAACCCAAACCTCAACCAGCTGCTGATCG 1980
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1921 ACAAAAGGCATCATCA--AAAG-GCGGAGGAAAACCCAAACCTCAACCAGCTGCTGATCG 1977
Query 1981 TGAAATTACTATGGCAAGACTTGATATTCGAGTAGGTAAAATTGTGAAGGCTGAGAGACA 2040
|||||| |||||||||||||||||||| ||||| |||||||||||||||||||||| |||
Sbjct 1978 TGAAATAACTATGGCAAGACTTGATATCCGAGTTGGTAAAATTGTGAAGGCTGAGAAACA 2037
Query 2041 TCCTAAGGCAGATACATTGTATGTAGAAGAAATTGATATTGGGGGTGGTGAAATTCGCAC 2100
||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2038 TCCCAAGGCAGATGCATTGTATGTAGAAGAAATTGATGTTGGGGGTGGTGAAATTCGCAC 2097
Query 2101 TGTTGTTAGTGGACTGGTCAAATATATACCTCTAGAGGAGATGCAGAATCGTATGGTTTG 2160
|||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 2098 TGTTGTCAGTGGACTGGTCAAATATATACCTCTTGAGGAAATGCAGAATCGTATGGTTTG 2157
Query 2161 TGTTCTTTGTAACTTGAAACCGGCGAAAATGAGGGATATTGTGTCGCAAGCAATGGTTCT 2220
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2158 TGTTCTTTGCAACTTGAAACCGGCGAAAATGAGGGATATTGTGTCACAAGCAATGGTTCT 2217
Query 2221 TGCAGCTTCCAGTAGTGATGGAAGCAAGGTGGAGTTAGTTGAGCCCCCTGAATCTGCTAT 2280
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 2218 TGCAGCTTCCAGTAGTGATGGAAGCAAGGTGGAGTTAGTTGAGCCCCCTAAAACTGCTAA 2277
Query 2281 TATTGGAGAGCGAGTTACATTTCCCGGGTTTGAAGGCGAGCCAGATGATGTCTTAAACCC 2340
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2278 TATTGGAGAGCGAGTTACATTTCCCGGGTTTGAAGGCGAGCCAGACGATGTCTTAAACCC 2337
Query 2341 AAAGAAGAAAGTATGGGAGACACTTTTGGTGGATCTAAACACAAATGAGAATTTAGTTGC 2400
||||||||||||||||||||| |||||||| |||||||||||||| |||||| |||||||
Sbjct 2338 AAAGAAGAAAGTATGGGAGACGCTTTTGGTTGATCTAAACACAAAAGAGAATCTAGTTGC 2397
Query 2401 TTGCTACAAAGATGTTCCCTTCACTACATCTGCAGGTGTATGCAAAGTTTCATCCATCAG 2460
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2398 TTGCTACAAAGATGTGCCCTTCACTACATCTGCAGGTGTATGCAAAGTTTCATCCATCAG 2457
Query 2461 CAATGGCACGATCCGGTAAAAGCTTCCTTGAGCCATAAGTCAT-CTAATATTCTCCATTT 2519
||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||
Sbjct 2458 CAATGGCACGATCCGGTAAAAGCTTACTTGAGCCATAAG-CAAACTAATATTCTCCATTT 2516
Query 2520 CTATCTTTCACTGTAAGGGGGAAACGAAACGTATTTCTGAGATTTTCATTTGAAAATTTG 2579
||||||||| ||||||| | |||||||| | | | ||||||||||||||||||||||
Sbjct 2517 CTATCTTTCTCTGTAAGAG--AAACGAAA--T-T--CGGAGATTTTCATTTGAAAATTTG 2569
Query 2580 ATTCTAATTACAAACAGGTTCTTGTAAACTTTAAAGCTTGTTACAATT-TTGGTTATCGA 2638
|||||||||||||||| |||||||||||||| |||||||| ||||||| ||| |||| ||
Sbjct 2570 ATTCTAATTACAAACATGTTCTTGTAAACTT-AAAGCTTGGTACAATTGTTG-TTATTGA 2627
Query 2639 TTGATGTTGTGAGAAACATTCAGCTTCTTAAA-TTGGGCCCGGACGCAAAGCAA 2691
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 2628 TTGATGTTGTGAGAAACATTCAGCTTTTTAAAATTGGGCCCAGACGCAAAGCAA 2681
> AT5G02680.1 | Symbols: | LOCATED IN: endomembrane system; EXPRESSED
IN: 21 plant structures; EXPRESSED DURING: 13 growth
stages; BEST Arabidopsis thaliana protein match is: methionine--tRNA
ligase, putative / methionyl-tRNA synthetase, putative
/ MetRS, putative (TAIR:AT4G13780.1); Has 252 Blast hits
to 252 proteins in 89 species: Archae - 0; Bacteria - 71;
Metazoa - 93; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes
- 14 (source: NCBI BLink). | chr5:604918-608193 FORWARD
LENGTH=983
Length=983
Score = 174 bits (94), Expect = 3e-42
Identities = 115/125 (92%), Gaps = 2/125 (2%)
Strand=Plus/Plus
Query 1228 GGTGTCTGACACATCATTTTCATGGACTGATTTGCAAGCAAAACTGAATGGCGAGTTGCT 1287
|||||||||||||| ||| |||||| |||||||||||||||||||||||||||||| ||
Sbjct 431 GGTGTCTGACACATTGTTTCCATGGAATGATTTGCAAGCAAAACTGAATGGCGAGTTTCT 490
Query 1288 GAACAACCTAGGCAACTTTGTTAATCGAGTTCTGAGTTTTATAGCAAAGC-C-TAATAAT 1345
||||||||||||||||| ||||||||||| |||||||||||||||||||| | | |||||
Sbjct 491 GAACAACCTAGGCAACTCTGTTAATCGAGCTCTGAGTTTTATAGCAAAGCACATGATAAT 550
Query 1346 GCAGG 1350
|||||
Sbjct 551 GCAGG 555
Score = 171 bits (92), Expect = 4e-41
Identities = 129/146 (88%), Gaps = 6/146 (4%)
Strand=Plus/Plus
Query 2115 TGGTCAAA-T-ATATACCTCTAGAGGAGATGCAGAATCGTATGGTTTGTGTTCTTTGTAA 2172
|||| ||| | || |||| || ||||| |||||||| |||||||||| ||||||||||||
Sbjct 611 TGGTGAAATTAAT-TACCGCTTGAGGAAATGCAGAACCGTATGGTTTCTGTTCTTTGTAA 669
Query 2173 CTTGAAACCGGCGA-AAATGAGGGATATTGTGTCGCAAGCAATGGTTCTTGCAGCTTCCA 2231
|||||| ||||| | |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 670 CTTGAAGCCGGCTACAAATGAGGGATATTGTGTTACAAGCAATGGTTCTTGCAGCTTCCA 729
Query 2232 GTAGTGATGGAA-GCAAGGTGGAGTT 2256
||||||| |||| ||||||| |||||
Sbjct 730 GTAGTGA-GGAAAGCAAGGTAGAGTT 754
Score = 110 bits (59), Expect = 1e-22
Identities = 108/129 (84%), Gaps = 14/129 (11%)
Strand=Plus/Plus
Query 1031 GTGATGTTTCCCTCTACCCAGCTTGGAACTGGGGAAAATTGGACACTGATGAAGACAATC 1090
|||||| |||| ||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 319 GTGATGGTTCCTTCTACGTGGCTTGGCACTGGGGAAAATTGGACACTGATGAAGACAATC 378
Query 1091 AGTGTGACTGAATATTTAAACTACGAAGACGGAAAGTTCTCCAAGAGTAAAGGTGTTGGA 1150
| | | ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 379 ------A--G---A---AAACTACGAAGACGGAAAGTTCTCCAAGAGTTAAGGTGTTGGA 424
Query 1151 GTGTTTGGT 1159
|||||||||
Sbjct 425 GTGTTTGGT 433
Score = 110 bits (59), Expect = 1e-22
Identities = 65/68 (96%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 2028 AGGCTGAGAGACATCCTAAGGCAGATACATTGTATGTAGAAGAAATTGATATTGGGGGTG 2087
||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 553 AGGCTGAGAAACATCCTAAGGCAAATGCATTGTATGTAGAAGAAATTGATATTGGGGGTG 612
Query 2088 GTGAAATT 2095
||||||||
Sbjct 613 GTGAAATT 620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133644736152
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5