BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493537
Length=1660
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13770.1 | Symbols: CYP83A1, REF2 | cytochrome P450, family ... 2514 0.0
> AT4G13770.1 | Symbols: CYP83A1, REF2 | cytochrome P450, family
83, subfamily A, polypeptide 1 | chr4:7990485-7992311 REVERSE
LENGTH=1735
Length=1735
Score = 2514 bits (1361), Expect = 0.0
Identities = 1482/1542 (96%), Gaps = 2/1542 (0%)
Strand=Plus/Plus
Query 1 GTAACACTCAAAAGTAGTAACAACTAAGAATGGAAGATATCATCATCGGCGTGGTGGCTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTAACACTCAAAAGTAGTAACAACTAAGAATGGAAGATATCATCATCGGCGTGGTGGCTC 60
Query 61 TCGCCGCGGTTCTCCTCTTCTTCCTTTACCAAAAACCGAAAACCAAACGGTACAAGCTGC 120
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 61 TCGCCGCGGTTCTCCTTTTCTTCCTCTACCAAAAACCGAAAACCAAACGGTACAAGCTAC 120
Query 121 CTCCTGGGCCATCACCACTTCCGGTGATTGGAAACCTCCTTCAGCTTCAGAAGCTTAACC 180
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 CTCCAGGGCCATCACCACTTCCGGTGATCGGAAACCTCCTTCAGCTTCAGAAGCTTAACC 180
Query 181 CACAACGCTTCTTCGCTGGATGGGCCAAAAAGTACGGACCAATCTTGTCATACAGGATAG 240
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 181 CACAACGCTTCTTCGCTGGATGGGCCAAAAAATACGGTCCAATCTTGTCATACAGGATAG 240
Query 241 GAAGCAGAACAATGGTTGTGATATCTTCAGCTGAGCTAGCTAAAGAGCTTCTCAAAACGC 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 GAAGCAGAACAATGGTGGTGATATCTTCAGCTGAGCTAGCTAAAGAGCTTCTCAAGACGC 300
Query 301 AAGATGTCAACTTTGCGGACCGACCTCCGCACCGTGGCCACGAGTTCATATCCTACGGCA 360
|||||||||||||||||||||| ||||| || |||||||| |||||||||||||||||||
Sbjct 301 AAGATGTCAACTTTGCGGACCGGCCTCCACATCGTGGCCATGAGTTCATATCCTACGGCA 360
Query 361 GGCGTGACATGGCATTGAACCACTACACACCGTATTACCGAGAGATAAGGAAGATGGGGA 420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGCGTGACATGGCATTAAACCACTACACACCGTATTACCGAGAGATAAGGAAGATGGGGA 420
Query 421 TGAACCACTTGTTCTCACCAACACGTGTGGCCACCTTTAAGCATGTACGAGAGGAAGAGG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGAACCACTTGTTCTCACCAACACGTGTGGCCACCTTTAAGCATGTACGAGAGGAAGAGG 480
Query 481 CTAGGAGGATGATGGATAAGATCAACAAGGCCGCGGATAAATCCGAAGTGGTCGATATAA 540
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 481 CTAGGAGGATGATGGATAAGATCAACAAGGCCGCGGATAAATCCGAAGTAGTCGATATAA 540
Query 541 GCGAGCTTATGTTGACCTTCACGAACTCGGTTGTGTGTAGACAAGCGTTCGGGAAGAAGT 600
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTGAGCTTATGTTGACCTTCACGAACTCGGTTGTGTGTAGACAAGCGTTCGGGAAGAAGT 600
Query 601 ACAATGAAGATGGGGAAGAGATGAAGAGGTTCATCAAGATTCTTTATGGGACTCAAAGCG 660
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACAATGAAGATGGAGAAGAGATGAAGAGGTTCATCAAGATTCTTTATGGGACTCAAAGCG 660
Query 661 TTTTGGGGAAGAT-TTTCTTCTCTGATTTTTTCCCATATTGTGGCTTTCTGGATGATTTG 719
||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 661 TTTTGGGGAAGATCTTT-TTCTCTGATTTTTTCCCATATTGTGGCTTTCTTGATGATTTA 719
Query 720 TCAGGACTCACAGCTTATATGAAAGAGTGTTTCGAACGACAAGACACTTATGTTCAAGAG 779
||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 720 TCAGGCCTCACAGCTTATATGAAAGAGTGTTTCGAAAGACAAGACACTTATATTCAAGAG 779
Query 780 GTTATCAATGAGACGCTTGATCCCAAGAGGGTCAAGCCCGAAACCGAGAGCATGATCGAT 839
||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 780 GTTGTCAATGAGACGCTTGATCCTAAGAGAGTCAAGCCCGAAACCGAGAGCATGATTGAT 839
Query 840 CTCTTGATGGAGATCTTCAAAGAACAACCTTTCGCTTCTGAGTTCACTGTAGATAATGTC 899
|||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 840 CTCTTGATGGGGATCTACAAAGAACAACCTTTCGCTTCTGAGTTTACTGTAGATAATGTC 899
Query 900 AAAGCCGTGATCTTGGATATTGTAGTGGCGGGAACAGATACCGCAGCTGCGGCAGTTGTG 959
|||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 900 AAAGCCGTCATCTTGGATATTGTAGTGGCGGGAACAGATACTGCAGCTGCGGCGGTTGTG 959
Query 960 TGGGGGATGACATATCTAATGAAGTACCCTCAAGTGTTGAAGAAAGCTCAAGCAGAAGTG 1019
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 960 TGGGGGATGACGTATCTAATGAAGTACCCACAAGTGTTGAAGAAAGCTCAAGCAGAAGTG 1019
Query 1020 AGAGAGTATATGAAAGAGAAAGGTTCAACGTTTGTTACTGAAGACGACGTCAAGAACCTT 1079
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1020 AGAGAGTATATGAAAGAGAAAGGTTCAACGTTCGTTACTGAAGACGATGTCAAGAACCTT 1079
Query 1080 CCTTACTTCAGAGCCTTAGTTAAAGAAACCTTAAGGATCGAACCGGTGATTCCTCTCCTT 1139
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1080 CCTTACTTCAGAGCCTTAGTTAAAGAAACCCTAAGGATCGAACCAGTGATTCCTCTCCTT 1139
Query 1140 ATCCCTCGTGCTTGCATTCAAGACACCAAGATCGCCGGTTACGACATCCCGGCAGGGACA 1199
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 1140 ATCCCTCGTGCTTGCATTCAAGATACCAAGATCGCCGGTTACGACATCCCCGCAGGAACA 1199
Query 1200 ACGGTCAACGTCAACGCGTGGGCCGTGTCACGTGACGAGAAGGAGTGGGGACCGAACCCT 1259
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1200 ACGGTCAACGTCAACGCGTGGGCCGTGTCACGTGACGAGAAAGAATGGGGACCGAACCCT 1259
Query 1260 GACGAGTTCAGGCCCGAGAGGTTTCTTGAGAAGGATGTTGACTTCAAAGGCACGGACTAC 1319
|| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1260 GATGAGTTTAGGCCCGAGAGGTTTCTTGAGAAGGAAGTTGACTTCAAAGGCACGGACTAC 1319
Query 1320 GAGTTTATACCGTTCGGGTCAGGCCGGAGAATGTGCCCTGGAATGCGTCTTGGTGCGGCG 1379
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 1320 GAGTTTATACCGTTCGGGTCAGGCCGGAGAATGTGCCCGGGAATGCGTCTTGGGGCCGCG 1379
Query 1380 ATGCTCGAGGTTCCTTATGTGAACCTTCTTCTCAACTTCAACTTTAAACTTCCTAATGGC 1439
||||| ||||||||||||| ||||||||| |||| ||||||||||||||||||||||||
Sbjct 1380 ATGCTTGAGGTTCCTTATGCGAACCTTCTCCTCAGCTTCAACTTTAAACTTCCTAATGGG 1439
Query 1440 ATGAAACCAGATGATATCAATATGGATGTCATGACTGGTCTCGCTATGCACAAGTCGCAG 1499
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1440 ATGAAACCAGATGATATCAATATGGATGTCATGACTGGTCTTGCTATGCACAAGTCGCAG 1499
Query 1500 CATCTGAAGCTTGTTCCCGAGAAAGTGAACAAGTACTAGCTA 1541
||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 1500 CATCTCAAGCTTGTTCCAGAGAAAGTGAACAAGTATTAGCTA 1541
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82027690530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5