BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493541
Length=826
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13720.1 | Symbols: | Inosine triphosphate pyrophosphatase ... 732 0.0
> AT4G13720.1 | Symbols: | Inosine triphosphate pyrophosphatase
family protein | chr4:7966952-7968925 REVERSE LENGTH=866
Length=866
Score = 732 bits (396), Expect = 0.0
Identities = 453/480 (94%), Gaps = 6/480 (1%)
Strand=Plus/Plus
Query 350 GGGCCATACATCAAGTGGTTTCTAGAGAAGCTTGGTCATGAAGGTCTGAACAACTTACTG 409
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 296 GGGCCATACATAAAGTGGTTTCTAGAGAAGCTTGGTCACGAAGGTCTGAACAACTTACTG 355
Query 410 ATGGCCTATGAAGATAAATCAGCTTATGCCTTGTGCGCATTCTCTTTCTCGCGTGGTCCA 469
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 356 ATGGCCTATGAAGATAAATCAGCTTATGCATTGTGCGCATTCTCTTTCTCGCGTGGTCCA 415
Query 470 GGAGCTGAACCTCTTACATTTTTGGGGAAAACTCCGGGTAAGATAGTTCCAGCAAGAGGA 529
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 416 GGTGCTGAACCTCTTACATTTTTGGGGAAAACTCCGGGTAAGATAGTTCCAGCCAGAGGA 475
Query 530 CCAACTGATTTCGGATGGGATCCAGTGTTTCAACCTGATGGATATGACCAAACTTATGCA 589
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 476 CCAACTGATTTCGGATGGGATCCAGTGTTTCAACCTGATGGATATGACCAAACGTATGCA 535
Query 590 GAGATGGAAAAGGAAGAAAAGAACAAGATATCTCATAGGTACAAGTCTTTAGCATTGGTG 649
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 536 GAGATGGCAAAGGAAGAAAAGAACAAGATATCACATAGGTACAAGTCTTTAGCATTGGTG 595
Query 650 AAATCTCACTTTAAGGAGGCTGGCTATGTGTTCCAGACAGATGATGGTACCATCTAAAGA 709
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 596 AAATCTCACTTTAAGGAGGCTGGCTATGTGTTCCAGACAGATGATGGTACCATTTAAAGA 655
Query 710 GAACCAGAA-TCCAATGATCATTGTCTCCAGCTTTTGAAGATTTGAGCACTAATTACTCA 768
||||||||| || | | |||||||||| | || |||||||| | |||||| ||| |||||
Sbjct 656 GAACCAGAACTC-ATTCATCATTGTCTTCTGCGTTTGAAGAATGGAGCACCAATCACTCA 714
Query 769 CCAGATTCTTGTTCCTATTCTAAGCTCCTTTTGGGG-TATT-AGTATTGTGTCttttttt 826
||||||||||||||||||||||||||||||| ||| |||| | |||||| ||||||||
Sbjct 715 CCAGATTCTTGTTCCTATTCTAAGCTCCTTT-GGGAATATTGA-TATTGTAACTTTTTTT 772
Score = 455 bits (246), Expect = 3e-127
Identities = 280/296 (95%), Gaps = 3/296 (1%)
Strand=Plus/Plus
Query 1 GCTTTCGCTATCTGAGACTGAGACACAGAAAAT---GGCGGCGGCGGCGAAAGCAGCGGT 57
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1 GCTTTCGCTATCTGAGACTGAGACACAGACAATGGCGGCGGCGGCGGCGAAAGCAGCGGT 60
Query 58 GGTTTTGCCACGGCCGGTGACGTTTGTGACGGGAAACGCCAAAAAGCTCGAAGAGGTCAA 117
|||||||||||||||||||||||||||||| ||||| || || ||||||||||| |||||
Sbjct 61 GGTTTTGCCACGGCCGGTGACGTTTGTGACTGGAAATGCTAAGAAGCTCGAAGAAGTCAA 120
Query 118 AGCTATCATCGGAAATTCCATTCCTTTCAAGTCTCTCAAACTCGACCTGCCTGAGCTTCA 177
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 121 AGCTATCATCGGAAATTCCATTCCTTTCAAGTCTCTCAAACTCGATTTGCCTGAGCTCCA 180
Query 178 AGGTGAGCCTGAGGATATCTCCAAAGAGAAGGCTCGTTTGGCTGCTCTTCAGGTGAATGG 237
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 181 AGGTGAGCCTGAGGATATTTCCAAAGAGAAGGCTCGTTTGGCTGCTCTTCAGGTGGATGG 240
Query 238 ACCAGTGCTAGTGGAAGATACATGTCTTTGTTTCAATGCTTTGAAAGGGCTTCCTG 293
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 241 ACCAGTGCTTGTGGAAGATACATGTCTCTGTTTCAATGCTTTGAAAGGGCTTCCTG 296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40237551747
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5