BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493543
Length=1482
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13700.1 | Symbols: ATPAP23, PAP23 | purple acid phosphatase... 2004 0.0
> AT4G13700.1 | Symbols: ATPAP23, PAP23 | purple acid phosphatase
23 | chr4:7957072-7958919 REVERSE LENGTH=1377
Length=1377
Score = 2004 bits (1085), Expect = 0.0
Identities = 1246/1325 (94%), Gaps = 6/1325 (0%)
Strand=Plus/Plus
Query 1 ATGCCTTTACTAATAATCATTACCCTAACCTCAATGTCGTTGTTACTTGCCGCCGGCGAA 60
||| ||||||||||||| ||||||||||||||||| || |||||||||||||||| ||||
Sbjct 1 ATGACTTTACTAATAATGATTACCCTAACCTCAATATCATTGTTACTTGCCGCCGCCGAA 60
Query 61 ACAATCCCAACAACTTTAGACGGTCCGTTCAAGCCACTGACCCGCCGGTTTGACCCGTCT 120
|||||||| |||||||||||||| |||||||||||| | ||||||||||| || ||||||
Sbjct 61 ACAATCCCGACAACTTTAGACGGCCCGTTCAAGCCATTAACCCGCCGGTTCGAGCCGTCT 120
Query 121 CTACGTCGAGGCAGTGACGACTTACCTATGGATCATCCAAGGCTGAGGAAGAGAAACATC 180
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 121 CTACGACGAGGCAGTGACGACTTACCTATGGATCATCCAAGGCTGAGAAAGAGAAACGTT 180
Query 181 AGCTCTGATTTCCCAGAACAGATTGCTTTAGCTCTCTCTACTCCAACCTCCATGTGGGTT 240
||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 AGCTCCGATTTTCCAGAACAGATTGCTTTAGCTCTCTCTACACCAACCTCCATGTGGGTT 240
Query 241 TCTTGGGTCACTGGTGATGCTATAGTTGGAAAAGATGTGAAACCGCTTGATCCTAGTTCG 300
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 TCTTGGGTCACTGGTGATGCTATAGTTGGCAAAGATGTGAAACCGCTTGATCCTAGTTCT 300
Query 301 ATTGCTAGTGAGGTTTGGTATGGGAAGGAGAAAGGAAACTATTTGCTAAAGAAGAAAGGA 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 301 ATTGCTAGTGAGGTTTGGTATGGGAAGGAGAAAGGAAACTATATGCTAAAGAAGAAAGGA 360
Query 361 AATGCAACAGTTTATAGTCAATTGTATCCCTTTGATGGTCTCCTCAATTACACATCAGGC 420
|| ||||||||||| ||||| || ||||||| ||||||||| ||||||||||||||||||
Sbjct 361 AACGCAACAGTTTACAGTCAGTTATATCCCTCTGATGGTCTTCTCAATTACACATCAGGC 420
Query 421 ATCATACACCATGTCCTCATTGACGGTCTGGAACCAGAAACTAAGTATTATTATAGATGC 480
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 421 ATCATACATCATGTCCTCATTGACGGTCTGGAACCAGAAACTAGGTATTATTATAGGTGT 480
Query 481 GGCGATAGCTCTGTTTCTGCAATGAGTGAGGAAATTTCTTTTGAGACTTTGCCACTGCCA 540
|| |||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 481 GGTGATAGCTCTGTTCCTGCAATGAGTGAGGAGATTTCTTTTGAGACTTTGCCATTGCCA 540
Query 541 AGTAAAGATGCATATCCTCATCGAATTGCCTTTGTTGGGGATATGGGTCTTACTAGTAAC 600
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 541 AGTAAAGATGCATATCCTCATAGAATTGCCTTTGTTGGGGATTTGGGTCTTACTAGTAAT 600
Query 601 ACAACAACCACCATTGACCATTTGATGGAAAATGA-CCCTTCACTGGTTTTAATTGTTGG 659
|| ||||||||||||||||||||||||||||| || ||| ||| ||||| ||||||||||
Sbjct 601 ACTACAACCACCATTGACCATTTGATGGAAAACGATCCC-TCATTGGTTATAATTGTTGG 659
Query 660 GGACTTAACATATGCAAACCAGTATCGTACAACTGGTGGCAAAGGAGCTT-CATGCTTCT 718
||||||||| |||||||||||||||||||| | |||||| ||||||| || |||||||||
Sbjct 660 GGACTTAACTTATGCAAACCAGTATCGTACTATTGGTGGTAAAGGAG-TTCCATGCTTCT 718
Query 719 CATGTTCGTTTCCCGATGCACCTATTAGGGAGACGTATCAACCTCGCTGGGATGCCTGGG 778
||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 719 CATGTTCGTTTCCTGATGCACCTATAAGGGAGACTTATCAACCTCGCTGGGATGCTTGGG 778
Query 779 GAAGGTTCATGGAGCCACTGACTTCCAAGGTCCCAACGATGGTCATTGAAGGCAACCATG 838
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GAAGGTTCATGGAGCCATTGACTTCCAAGGTCCCAACGATGGTCATTGAAGGCAACCATG 838
Query 839 AGATTGAGCCTCAAGCTTCAGGGATCACCTTTAAGTCATATTCTGAAAGGTTTTCAGTTC 898
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 839 AGATTGAGCCTCAAGCTTCAGGGATCACCTTTAAGTCATATTCTGAAAGGTTTGCTGTTC 898
Query 899 CTGCAAGTGAGAGTGGCTCCAACAGCAACTTCTACTATTCTTTTGATGCTGGAGGAGTGC 958
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 899 CTGCAAGTGAGAGTGGCTCCAACAGCAACTTCTACTATTCTTTTGATGCCGGAGGAGTGC 958
Query 959 ATTTTGTTATGTTGGGTGCTTATGTTGATTACAATCACACTGGAGC-GCAGTATGCATGG 1017
||||||||||||||||||| ||||||||||||||| ||||||| || ||| |||||||||
Sbjct 959 ATTTTGTTATGTTGGGTGCATATGTTGATTACAATAACACTGG-GCTGCAATATGCATGG 1017
Query 1018 CTAAAGGAAGACTTGTCTAAAGTTGATCGTGCAGTGACACCTTGGTTGGTTGCAACAATG 1077
||||||||||||||||||||||||||||| || |||||||| ||| |||||||||| |||
Sbjct 1018 CTAAAGGAAGACTTGTCTAAAGTTGATCGCGCTGTGACACCATGGCTGGTTGCAACTATG 1077
Query 1078 CATCCGCCTTGGTATAACAGCTACTCCTCGCACTACCAAGAGTTTGAATGCATGAGGCAG 1137
||||| |||||||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1078 CATCCACCTTGGTACAACAGCTACTCCTCGCATTACCAGGAGTTTGAATGCATGAGGCAG 1137
Query 1138 GAAATGGAAGAGCTTCTTTACCAACACCGTGTCGACATCGTGTTTGCAGGACATGTACAT 1197
|||||||||||||||||||||||| ||||||| ||||| || ||||||||||||||||||
Sbjct 1138 GAAATGGAAGAGCTTCTTTACCAATACCGTGTTGACATAGTTTTTGCAGGACATGTACAT 1197
Query 1198 GCATACGAGAGAATGAACCGCATATACAACTACACACTAGACCCATGTGGGCCAGTTTAC 1257
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1198 GCATACGAGAGAATGAACCGCATATACAACTACACACTAGACCCATGTGGACCAGTTTAC 1257
Query 1258 ATAACAATAGGAGATGGTGGAAACATTGAGAAAGTTGATGTGGACTTTGCGGATGATCCT 1317
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1258 ATAACAATAGGAGATGGTGGAAACATTGAGAAAGTTGATGTGGACTTTGCTGATGACCCT 1317
Query 1318 GGGAA 1322
|||||
Sbjct 1318 GGGAA 1322
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73091993520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5