BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493551
Length=1364
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13620.1 | Symbols: | Integrase-type DNA-binding superfamil... 1788 0.0
> AT4G13620.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr4:7932138-7933542 FORWARD LENGTH=1405
Length=1405
Score = 1788 bits (968), Expect = 0.0
Identities = 1278/1415 (90%), Gaps = 71/1415 (5%)
Strand=Plus/Plus
Query 1 ATGATcacaccaatacacacacaacacaacacTCCTTAATTATCGTATATATAAACATTT 60
|||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGATCACACCAAT----ACAC-ACACAACACTCCTTAATTCTCGTATATATAAACATTT 55
Query 61 ATTCTCCACTTATTTCT-TCAAAATTAAG-ACAGGCTTTGTTCTCTGGACAAATC-CTC- 116
||||||||| ||||| | ||||||||||| |||||||| ||||||||||||| | |||
Sbjct 56 ATTCTCCACCTATTT-TGTCAAAATTAAGAACAGGCTTCATTCTCTGGACAAA-CACTCA 113
Query 117 --AAA-AAAC------ATGAACATGGAAGATCAGTTTCCTAAAATAGAAACTAGCTTCAT 167
||| |||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 AAAAACAAACAAAAAAAGGAACATGGAAGATCAGTTTCCTAAAATAGAAACTAGCTTCAT 173
Query 168 GCACGACAAGCTCTTGTCTTCTGGATTCTACGGGATCTTGAGTTCTTCAACGCCACCACA 227
||||||||||||||||||||||||| |||||||| ||||||||||||| ||||| |||||
Sbjct 174 GCACGACAAGCTCTTGTCTTCTGGAATCTACGGGTTCTTGAGTTCTTCGACGCCGCCACA 233
Query 228 ACTTCTCGGTGTTCCAATATTCTTGGAAGGTATGAAATCTCCTCTTCTTCCTTCTTCTTC 287
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 234 ACTTCTCGGTGTTCCAATATTTTTGGAAGGTATGAAATCTCCTCTTCTTCCTGCTTCTTC 293
Query 288 GACTCCGAGCTACTTTGTGTCGCCTCATGATCATGAGCTCACTTCTTCTATTCATCAACC 347
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
Sbjct 294 GACTCCGAGCTACTTTGTGTCGCCTCATGATCATGAGCTCACATCTTCTATTCATCCATC 353
Query 348 TCCGATAGCTTCTGTTCCTTGGAACTTTCTAGAATCTTTTCCTCAGTCTCAACGTCCTGA 407
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 354 TCCGGTAGCTTCTGTTCCTTGGAACTTTCTAGAATCTTTTCCTCAGTCTCAACATCCTGA 413
Query 408 TCACT-TTCCTTCTAAACCTCCAAACCTTACTTTGTTCCTTAAAGAACCAAAGCTTCTAG 466
||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 414 TCA-TCATCCTTCTAAACCTCCAAACCTTACTTTGTTCCTTAAAGAACCAAAGCTACTAG 472
Query 467 AACTTTCTCAATCTGATAA-CAACATGAGCCCTTACCATAAATACATTCCAAACT-CTCT 524
||||||||||||| || || ||||||||||||||||||||||||||| ||||||| || |
Sbjct 473 AACTTTCTCAATCCGA-AAGCAACATGAGCCCTTACCATAAATACATCCCAAACTCCT-T 530
Query 525 TTATCAATCAGATCAAAATAGAAACGAGTGGGTAGAGATCAATAAAACCCTAACCAACTA 584
|||||||||||| ||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct 531 TTATCAATCAGACCAAAACAGAAACGAATGGGTAGAGATCAATAAAACTCTAACCAACTA 590
Query 585 TCCCTCAAAAGGTTTCGGAAACTATTGGCTAAGTACCACCAAGACTCAGCCCATGAAATC 644
|||||| |||||||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 591 TCCCTCGAAAGGTTTTGGAAACTATTGGCTAAGTACCACCAAGACTCAACCCATGAAGTC 650
Query 645 AAAAACAAGAAAGGTTGTCCAGACGACAACACCAACAAAGCTGTATAGAGGAGTGAGACA 704
|||||||||||||||||| |||||||| || |||||||| ||||||||||||||||||||
Sbjct 651 AAAAACAAGAAAGGTTGTTCAGACGACGACCCCAACAAAACTGTATAGAGGAGTGAGACA 710
Query 705 AAGACACTGGGGCAAATGGGTCGCGGAGATTAGGCTTCCAAGGAACAGAACCCGTGTTTG 764
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 711 AAGACACTGGGGCAAATGGGTCGCAGAGATTAGGCTTCCAAGGAACAGAACCCGTGTTTG 770
Query 765 GCTCGGTACTTTTGAAACCGCTGAGCAAGCAGCAATGGCTTACGACACAGCAGCTTATAT 824
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 771 GCTCGGCACTTTTGAAACCGCTGAGCAAGCAGCAATGGCTTACGATACAGCAGCTTATAT 830
Query 825 CCTGCGTGGCGAATTCGCACACCTCAACTTTCCCGACCTAAAACATCAGCTCAAGTCCGG 884
||| ||||||||||||||||||||||||||||| || || ||||| ||||||||||||||
Sbjct 831 CCTTCGTGGCGAATTCGCACACCTCAACTTTCCTGATCTTAAACACCAGCTCAAGTCCGG 890
Query 885 TTCCTTGCGATGCATGATCGCCTCGCTTTTGGAGTCCAAGATTCAACAGATATCCTCTTC 944
||| |||||||||||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 891 TTCTTTGCGATGCATGATCGCCTCACTTTTGGAGTCCAAGATTCAACAGATCTCATCTTC 950
Query 945 CCAAGTAAGTAACTCTCCTTCTCCACCTCCTCCTCCAAAAGTGGGAATATCAGAGCCAAA 1004
|||||||||||||||||||||| |||||||||||||||||||||| | | |||| |||
Sbjct 951 CCAAGTAAGTAACTCTCCTTCT---CCTCCTCCTCCAAAAGTGGGAACACCGGAGCAAAA 1007
Query 1005 GAATCATCACATGAAGATGGAGTCAGGAGAAGAAGTGATGATGAAGAAACAGAAAATTCA 1064
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1008 GAATCATCACATGAAGATGGAGTCAGGAGAAGACGTGATGATGAAGAAACAGAAAAGCCA 1067
Query 1065 TAAGGAAGTGATTGAAGGAGATGGTGTACAATTGAGTAGGATGCCATCTTTGGATATGGA 1124
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1068 TAAGGAAGTGATGGAAGGAGATGGTGTACAATTGAGTAGGATGCCTTCTTTGGATATGGA 1127
Query 1125 TCTCATTTGGGATGCTCTCTCA-TT--TC---CTTATT--CTTC---TT--GACTT-T-A 1169
|||||||||||||||||||||| || || ||| || |||| || | || | |
Sbjct 1128 TCTCATTTGGGATGCTCTCTCATTTCCTCATTCTTCTTGACTTCAAATTAATATTTGTCA 1187
Query 1170 AA-TTA----A--TA----t----ttttttATAT-AAAA-ATT---CCAAAGAAAGATAT 1209
|| ||| | || | |||||||||| |||| || ||||||||||| ||
Sbjct 1188 AACTTATTTTACTTACTTCTACCCTTTTTTATATCAAAAGTTTCCACCAAAGAAAGAAAT 1247
Query 1210 TCATAATATGATGCCAAGATTCAAGATTGGTTTTCATTTGTTGTTAAACACATTGTGTTT 1269
||||| ||||||| | |||||||||||| |||||| ||| |||||||||| ||
Sbjct 1248 TCATATTATGATG-C------CAAGATTGGTTTGCATTTGGGGTTGAACACATTGTAATT 1300
Query 1270 TTTCTTACGACCACATAATCAAGTGGTTCTCCtttttttGTCTGCTAATTAATTGTTCTT 1329
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1301 CTTCTTACGACCACATAATCAAGTGGTTCTCCTTTTTTTGTCTGCTAATTAATTGTTCTT 1360
Query 1330 TTCTTTGCGGTTACTAGTAACCATAAAATAGAAAA 1364
|||||||||||||||||||||||||||||||||||
Sbjct 1361 TTCTTTGCGGTTACTAGTAACCATAAAATAGAAAA 1395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67168329210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5