BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg493552

Length=362
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G13615.1 | Symbols:  | Uncharacterised protein family SERF |...   529    8e-150


> AT4G13615.1 | Symbols:  | Uncharacterised protein family SERF 
| chr4:7924326-7925140 FORWARD LENGTH=366
Length=366

 Score =  529 bits (286),  Expect = 8e-150
 Identities = 342/368 (93%), Gaps = 8/368 (2%)
 Strand=Plus/Plus

Query  1    GATTGCAGATTTATCTTCGTTTCAACCATGACTCGTGGAAGTCAGAGAGAGCGTGACCGT  60
            ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    GATCGCCGATTTATCTTCGTTTCAACCATGACTCGTGGAAGTCAGAGAGAGCGTGACCGT  60

Query  61   GAAAGAGCCGCGGCTCGTGCTGGAGGAAAGGGTAAGAATGGTGACGATGGTTTGACACCG  120
            |||||||| || ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct  61   GAAAGAGCTGCCGCTCGTGCTGGTGGAAAGGGTAAGAATGGTGACGATGGTTTGACGCCG  120

Query  121  GAGCAACGTCGTGAAAGAGATGGAAAAGCATTGCAAGAGAAGGCAGCTAAGAAAGCTGCT  180
            |||||||| |||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct  121  GAGCAACGCCGTGAAAGAGATGGGAAAGCATTGCAAGAGAAAGCGGCTAAGAAAGCTGCT  180

Query  181  CAAGCTGCAGCTGC-AGGTTCTGGTGGTGGAGCTGGAAGTAAAGGAGCTGCT---AAGAA  236
            |||||||||| ||| || ||||||||||| ||||||| | ||||||||||||   |||||
Sbjct  181  CAAGCTGCAGGTGCGAG-TTCTGGTGGTGCAGCTGGAGGAAAAGGAGCTGCTGCTAAGAA  239

Query  237  GTGATGATTGATCATTTGGTTTGTGTTTTGAGCATATTGTAGACTTTATGTTTGAAATTG  296
            |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  240  GTGATGAT-GATCATTTGGTTTGTCTTTTGAGCATATTGTAGACTTTATGTTTGAAATTG  298

Query  297  GGTTGTTTAGACCTGA-GCTTTGACTCTTGTCTGAA-TCCTATTATACTGTCTTTGTGTT  354
            |||||||||||||||| ||||||||||||||||||| ||| |||||| ||||||||||||
Sbjct  299  GGTTGTTTAGACCTGAAGCTTTGACTCTTGTCTGAAATCCCATTATAATGTCTTTGTGTT  358

Query  355  GAAATTGC  362
            ||| ||||
Sbjct  359  GAATTTGC  366



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16990499162


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5