BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg493553

Length=549
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G13600.1 | Symbols:  | Carbohydrate-binding X8 domain superf...   460    5e-129


> AT4G13600.1 | Symbols:  | Carbohydrate-binding X8 domain superfamily 
protein | chr4:7911179-7912892 REVERSE LENGTH=696
Length=696

 Score =  460 bits (249),  Expect = 5e-129
 Identities = 283/300 (94%), Gaps = 0/300 (0%)
 Strand=Plus/Plus

Query  1    ATGGctctctgtctccaatctctctccttcctcctccttcttctcttccgttcctccGCT  60
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  115  ATGGCTCTCTGTCTCCAAACTCTCTCCTTCCTCCTCCTTCTTCTCTTCCGTTCCTCCGCT  174

Query  61   GCGATGTGGTGCGTTGCTCGGTTCGATGTTACAAGCCAGGCGCTCCAGGCGGCTCTAGAC  120
            |||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct  175  GCGATGTGGTGCGTTGCTCGGTTCGATGTTACGAGCCAAGCGCTTCAGGCGGCTCTAGAC  234

Query  121  TACGCATGCGCCGCTGGAGCCGACTGTGCTCCAATCCAACCCAATGGTCTCTGTTTCCTC  180
            |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct  235  TACGCATGTGCCGCTGGAGCTGACTGTGCTCCAATCCAACCCAATGGTCTCTGTTTTCTC  294

Query  181  CCTAATACTGTTCAGGCTCACGCATCTTATGCTTTCAATAGCTACTTTCAGCGTGCAGCT  240
            ||||| || |||||||| ||||||||||| ||||||||||||||||| || |||||||| 
Sbjct  295  CCTAACACCGTTCAGGCACACGCATCTTACGCTTTCAATAGCTACTTCCAACGTGCAGCC  354

Query  241  ATGGCTCCTGGCTCATGTAACTTCGCTGGCACATCCACCATCGCAAAAACTGATCCTAGT  300
            |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct  355  ATGGCTCCTGGCTCATGTAACTTCGCTGGCACATCCACTATCGCCAAAACCGATCCTAGT  414


 Score =  381 bits (206),  Expect = 4e-105
 Identities = 237/251 (94%), Gaps = 5/251 (2%)
 Strand=Plus/Plus

Query  303  TAACGCTGGAGGGTCAGCTTCAACTACCACGGCGGGAGGAACGCCGACAACAACCGCCGG  362
            |||||||||||||||||||||||||||||| | ||||||||||||| ||||||||| |||
Sbjct  447  TAACGCTGGAGGGTCAGCTTCAACTACCACAGTGGGAGGAACGCCGTCAACAACCGTCGG  506

Query  363  AAACAGCCCAATGACGACATTGAGGCCACCGTCTGGCACCACGACATCACCATTTGGAAT  422
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  507  AAACAGCCCAATGACGACATTGAGGCCACCGTCTGGCACCACGACATCACCGTTTGGAAT  566

Query  423  AGGTGGCGGTGGACTTAATCCACAAGGAACCACTAC-A-A-CTAACACCGATGAATCTGG  479
            |||||||||||| ||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct  567  AGGTGGCGGTGGGCTTAATCCACAAGGAACCACTACTACAACTAACACCGATGAATCTGG  626

Query  480  AGCTTATATAATAAACAAGAGTA-TCGTCTCTATAGCTTTATTGGTGGCCTTACTTTTGT  538
            | ||||||||||||||||||||| | ||||||||||||||||| ||||||||||| ||||
Sbjct  627  ATCTTATATAATAAACAAGAGTACT-GTCTCTATAGCTTTATTTGTGGCCTTACTGTTGT  685

Query  539  GGTTTATATAG  549
            |||||||||||
Sbjct  686  GGTTTATATAG  696



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26322693028


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5