BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg493557

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G13520.1 | Symbols: SMAP1 | small acidic protein 1 | chr4:78...   593    4e-169


> AT4G13520.1 | Symbols: SMAP1 | small acidic protein 1 | chr4:7864394-7864924 
FORWARD LENGTH=531
Length=531

 Score =  593 bits (321),  Expect = 4e-169
 Identities = 423/469 (90%), Gaps = 20/469 (4%)
 Strand=Plus/Plus

Query  1    AACATTTTAGATCTTTCCCGAAGAAG---ACGAACAAGA-A-GAAGAGAGAAATGAGGCC  55
            ||||||||||||||||||||||||||   ||||| |||| | ||||||||||||||||||
Sbjct  17   AACATTTTAGATCTTTCCCGAAGAAGAAAACGAAGAAGAGACGAAGAGAGAAATGAGGCC  76

Query  56   GATGCAGCTGGATATGTTGTCGGAGATGGATGATGCAGGTTCTTCAATGGCCATGGACGT  115
            |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct  77   GATGCAGCTGGATATGTTATCGGAGATGGATGATGCAGGTTCTTCGATGGCCATGGACGT  136

Query  116  TGATGACCTCGAAGCCATGGAGATTCTCAACGAAGGAGGACTTGTTTCAGATAACAAGCT  175
            |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct  137  TGATGACCTCGAAGCCATGGAGATACTCAACGAAGGAGGACTTGTCTCAGATAACAAGCT  196

Query  176  CGCCGACGCCGATTTCTTCAACAAATTCGAGGATGATTTCGACGACACCGATATCAACTA  235
            |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct  197  CGCCGACGCCGATTTCTTCAACAAATTCGATGATGATTTCGATGACACCGATATCAACTA  256

Query  236  AATCCGGTTAA-TTTCTTCTTTAAGATTTCAGTTTTTGT-CCTAATCTTTATTTAATTTG  293
            ||||||||||| |||| |||||||||||||||||||| | ||||| ||| || |||||||
Sbjct  257  AATCCGGTTAAGTTTCCTCTTTAAGATTTCAGTTTTTTTTCCTAAACTTGATGTAATTTG  316

Query  294  TGGAGAAACCTATGTAAT--GTGTGTAA---GTCCTGGGATTTTAATGTTTGTGTTATGT  348
            |||||||||||||||| |  ||||||||   || |||||||||| ||||||||| |||||
Sbjct  317  TGGAGAAACCTATGTAGTAAGTGTGTAATAAGTTCTGGGATTTTTATGTTTGTGGTATGT  376

Query  349  AACAACGATTT-CATGTTTTTGGATCACTAAAACatttgatttgagtgttattttgcttt  407
            ||||| | ||| | |  ||| |||| |||||||||||||||||| |||||||| ||||||
Sbjct  377  AACAATGTTTTTCTTCATTT-GGATTACTAAAACATTTGATTTGTGTGTTATTGTGCTTT  435

Query  408  ggtattgatttgatttgtttttg-cacaaatttagaatgtttttttttt  455
            | | | |||| | ||| |||||| | |||||||||||||||||||||||
Sbjct  436  G-TCT-GATT-G-TTT-TTTTTGGCTCAAATTTAGAATGTTTTTTTTTT  479



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22555132003


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5