BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493561
Length=2534
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13550.1 | Symbols: | triglyceride lipases;triglyceride lip... 1690 0.0
> AT4G13550.1 | Symbols: | triglyceride lipases;triglyceride lipases
| chr4:7871057-7876963 REVERSE LENGTH=2971
Length=2971
Score = 1690 bits (915), Expect = 0.0
Identities = 1088/1171 (93%), Gaps = 14/1171 (1%)
Strand=Plus/Plus
Query 514 GGAAATTTGCATGAGGTGTTAGTAGAACTAGACGGAATTGGAGGTGGTGGGAAAGTTCAA 573
||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GGAAACTTGCACAAGGTGCTAGTAGAACTAGACGGAATTGGAGGTGGTGGGAAAGTTCAA 899
Query 574 CTGGAGATTAAGTAC-AAGGGATTTGAAGAAGTTGAAGAAGAAAAGAAGTGGTGGAGGTT 632
||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 900 CTGGAGATTAAGTACAAAGGG-TTTGGGGAAGTTGAAGAAGAAAAGAAGTGGTGGAGGTT 958
Query 633 CCCGTTTGTTTCAGAATTCCTTCAAAGAAATGAAATTAAGTCAGTTCTGAAAAATTTTGT 692
||| |||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 959 CCCATTTGTTTCAGAATTTCTTCAGAGAAATGAAATTAAGTCAGTTCTGAAGAATTTTGT 1018
Query 693 TGACTCTGAAGCAGTTGAGTCAGTTTTGAAAAATCTTGTTGACTCTGAAGCTGTGCCAGC 752
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1019 TGACTCTGAAGCAGTTGAGTCAGTTTTGAAAAATCTTGTCGACTCTGAAGCTGTGCCAGC 1078
Query 753 ACGTCAATTTGTAGAGTATGCCTTTGGACAGTTAAAGTCACTCAATGATGTC-CCCCTTA 811
|||||||||||||||||||||||||||||||||||||||||||||||| | | || ||||
Sbjct 1079 ACGTCAATTTGTAGAGTATGCCTTTGGACAGTTAAAGTCACTCAATGACG-CTCCTCTTA 1137
Query 812 AGAATATTAAACTTCTAAACAATGA-TGCGGAGGACTCTGAAGCAGCGAGTGCAGAGGAT 870
|||||| | ||||| |||||||| | ||| ||||||||||||| ||| ||| ||||||||
Sbjct 1138 AGAATACTGAACTTTTAAACAAT-ACTGCTGAGGACTCTGAAGGAGCAAGTTCAGAGGAT 1196
Query 871 TCATCCGATCAAGATCGCAGTACTGATCTGAGTAGTTCAGGAAAGCTTACCAAAGATAAA 930
|| || |||||| ||||||||||| |||||||||||||||||||||||| |||||| |||
Sbjct 1197 TCGTCAGATCAACATCGCAGTACTAATCTGAGTAGTTCAGGAAAGCTTAGCAAAGACAAA 1256
Query 931 GATGGTGATGGC------CACATCAATGAACTGGAGGGTGACAATGAAAATGGCAGCATT 984
|||||||||||| ||| |||||||||||||| ||| ||||||| ||||||||||
Sbjct 1257 GATGGTGATGGCGATGGTCACGGCAATGAACTGGAGGATGATAATGAAAGTGGCAGCATT 1316
Query 985 CAGTCAGAAAGTAATTTCTGGGATAACATCCCTGACATAGTTGGTCAAAGTATTGTTCAG 1044
||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||
Sbjct 1317 CAGTCAGAAAGTAATTTCTGGGATAACATCCCTGACATAGTTGGTCAAAATATCGTCCAG 1376
Query 1045 AAACTTGGCCTTCCTTCACCTGAGAAATTGAAGTGGAACGGAATGGAACTACTGGAAAAA 1104
|||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||
Sbjct 1377 AAACTTGGCCTTCCTTCACCTGAGAAATTGAAGTGGAATGGAACGGAACTACTTGAAAAT 1436
Query 1105 TTTGGTTTACAATCACGAAAAACTGCAGAAGCCAGTTACATTGAATCAGGGCTTGCCACT 1164
|||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1437 TTTGGTCTACAATCGCGAAAAACTGCAGAAGCCGGTTACATTGAATCAGGGCTTGCCACT 1496
Query 1165 GCTGATACTCGAGAAGGTGATGATAAAAAGGAAGATGGCCAGCTCGCTATTAATGCGA-C 1223
|||||||||||||||| |||||| ||||||||||||| ||| ||||||||||||| | |
Sbjct 1497 GCTGATACTCGAGAAGCAGATGATGAAAAGGAAGATGGTCAGGTCGCTATTAATGC-ATC 1555
Query 1224 CAAGTCTTCCCTTGCAGACATGAAGAATGCAACACAAGAATTGCTTAAGCAGGCTGATAA 1283
||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1556 CAAGTCTTCCCTTGCCGACATGAAGAATGCGACACAAGAATTACTTAAGCAGGCTGATAA 1615
Query 1284 TGTCTTTGGTGTATTAATGGTTTTAAAAGCAGTAGTGCCTCAACTAAGTAAGGACAGTCT 1343
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1616 TGTCTTTGGTGCATTAATGGTTTTAAAAGCAGTAGTGCCTCATTTAAGTAAGGACAGTGT 1675
Query 1344 TGGTTCAGAGAAGGTCATGGAAAAAGATGGTGCTTCCAATGTAACAGACGATGTCTCTGG 1403
|||||||||||||||||| |||||| ||||| |||||| |||||||||||||||||||||
Sbjct 1676 TGGTTCAGAGAAGGTCATAGAAAAAAATGGTTCTTCCAGTGTAACAGACGATGTCTCTGG 1735
Query 1404 TTCCCCTAAGAGTGAAAAACTCTCTGGTCTAGTGACTGTTGATGGAGCGGATGAAAAGAA 1463
|||| |||||| |||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1736 TTCCTCTAAGACCGAAAAAATCTCTGGTCTAGTGAATGTTGATGGAGCGGATGAAAAGAA 1795
Query 1464 CGCTGAGGAAATGAAAACACTCTTTTCTAGCGCAGAAAGTGCCATGGAGGCATGGGCAAT 1523
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 CGCTGAAGAAATGAAAACACTCTTTTCTAGCGCAGAAAGTGCCATGGAGGCATGGGCAAT 1855
Query 1524 GCTTGCAACTGCCCTGGGGCATCCAAGCTTTATCAAATCTGAGTTTGAAAAGCTATGTTT 1583
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1856 GCTTGCAACTGCTCTGGGGCATCCAAGCTTTATCAAATCTGAGTTTGAAAAGCTATGCTT 1915
Query 1584 TCTAGAAAACGACATCACTGACACACAGGTGGCAATTTGGCGTGATACCAGGAGGAAACG 1643
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
Sbjct 1916 TCTAGAAAACGACATCACTGACACACAGGTGGCAATTTGGCGTGATGCAAGGAGGAAAAG 1975
Query 1644 AGTAGTAATCGCTTTCAGAGGAACTGAACAG 1674
|||||| ||||||||||||||||||||||||
Sbjct 1976 AGTAGTTATCGCTTTCAGAGGAACTGAACAG 2006
Score = 1375 bits (744), Expect = 0.0
Identities = 824/864 (95%), Gaps = 0/864 (0%)
Strand=Plus/Plus
Query 1671 ACAGGTCCATAGTGGATTTTTGAGTGCATACGATTCAGTACGGATAAGGATAATATCGCT 1730
||||||||||||||||||| |||||||||||||||| ||| ||||||| || ||||||||
Sbjct 2096 ACAGGTCCATAGTGGATTTCTGAGTGCATACGATTCCGTAAGGATAAGAATTATATCGCT 2155
Query 1731 GCTCAAAATGGCAATTGGCTACATAGACGATGTTGCCGAGCGTGAAGATAAATGGCATGT 1790
|||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 2156 GCTCAAAATGACAATTGGCTACATAGACGATGTTACTGAGCGTGAAGATAAATGGCATGT 2215
Query 1791 TTATGTGACTGGTCATAGCTTGGGTGGTGCATTAGCCACACTCCTGGCTCTTGAACTTTC 1850
||||||||||||||||||||||||||| |||||||| |||||| ||||||| ||||||||
Sbjct 2216 TTATGTGACTGGTCATAGCTTGGGTGGCGCATTAGCTACACTCTTGGCTCTCGAACTTTC 2275
Query 1851 TTCCAGCCAATTAGCTAAACGTGGAGCAATCACTGTTACCATGTACAATTTTGGATCTCC 1910
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 2276 GTCCAGCCAATTAGCTAAACGTGGGGCAATCACTGTTACCATGTACAACTTTGGATCTCC 2335
Query 1911 AAGAGTAGGCAACAAACAATTTGCTGAAATTTATAACCAGAAAGTAAAAGACAGCTGGAG 1970
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2336 AAGAGTAGGCAACAAACAATTTGCTGAAATTTATAATCAGAAAGTAAAAGACAGCTGGAG 2395
Query 1971 AGTTGTAAACCATAGAGACATAATTCCCACAGTCCCTCGCTTAATGGGCTATTGTCATGT 2030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2396 AGTTGTAAACCATAGAGACATAATTCCCACAGTCCCTCGCTTAATGGGCTATTGTCATGT 2455
Query 2031 TGCTCATCCTGTTTATCTCACTGCTGGAGATGTGGAGGATATTGAGTTCCAGAAAGATGG 2090
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2456 TGCTCATCCTGTTTATCTCAGTGCTGGAGATGTGGAGGATATTGAGTTCCAGAAAGATGG 2515
Query 2091 TTATAATGCTGAGGTGATTGGGGAAGCCACACCTGATATTCTTGTTAGTAGATTTATGAA 2150
|||| |||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 2516 TTATCATGCTGAGGTGATTGGCGAAGCGACACCCGATATTCTTGTTAGTAGATTTATGAA 2575
Query 2151 AGGTGAGAAGGAACTCGTTGAGAAAATCCTTCAAACTGAAATTAAAATATTCAATGCACT 2210
|||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 2576 AGGTGAGAAGGAACTCGTTGAGAAGATACTTCAAACGGAAATTAAAATATTCAATGCACT 2635
Query 2211 TCGTGATGGAAGTGCCCTTATGCAGCACATGGAGGATTTCTATTACATCACACTGTTAGA 2270
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2636 TCGTGATGGAAGTGCCCTTATGCAGCACATGGAGGATTTCTATTACATCACATTGTTAGA 2695
Query 2271 GAGTGTGAAGTTATATTACAAAACTGTTGAAGATCCGAAAGGCGTTGAAAATACTACTAT 2330
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2696 GAGTGTGAAGTTATATTACAAAACTGTTGAAGATCCGAAAGGCGTTGAAAGTACTACTAT 2755
Query 2331 CCAATCAGTGGGAGAGAGCTAAGTGAGAGCATGTAGTGGCTCGCTCCGGCTATATAGGAT 2390
||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||
Sbjct 2756 CCAATCAGTGGGAGAGAGCTAAGTGAGAGCATGTAGTGGCTCGCTTCAGCTGTATAGGAT 2815
Query 2391 TCACATTGTATATTATTTACAAGAGACAAGCATCCATTGTAATTATTTTATAGTGATCTG 2450
||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2816 TCACACTGTATACTATATACAAGAGACAAGCATCCATTGTAATTATTTTATAGTGATCTG 2875
Query 2451 TGGTTCAGTCCTGTAAACTTAAACATAGACACGATATCAAAAGGGGACAAGAAGGTTGGA 2510
|||||||||| ||||||||||||| |||||| | |||||||||||||||||| |||||||
Sbjct 2876 TGGTTCAGTCGTGTAAACTTAAACGTAGACATGGTATCAAAAGGGGACAAGATGGTTGGA 2935
Query 2511 ATTTATTAAAATGTGTATAGATGA 2534
|||||| | |||| ||||||||||
Sbjct 2936 ATTTATCACAATGCGTATAGATGA 2959
Score = 363 bits (196), Expect = 6e-99
Identities = 245/269 (91%), Gaps = 2/269 (1%)
Strand=Plus/Plus
Query 1 ATGACTTCTCTGCAATTACACTGCTCTCTTCACTTCCTCCGTCCAAAACACCGTCTCCGC 60
||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 87 ATGACATCTCTGCAATTACACTTCTCTGTTCACTTCCTCCGTCCAAAACACCGTCTCCGC 146
Query 61 TACTCTCCTATCTTCACTCCCCGCACCTTCCACTTTCCCGGTAAAATCAATTTCAGAATC 120
|||||||||||||||| | ||||||||||| |||||||||| ||||||| ||||||| ||
Sbjct 147 TACTCTCCTATCTTCAATACCCGCACCTTCAACTTTCCCGGGAAAATCACTTTCAGACTC 206
Query 121 AAAGCCAAACCTAATTC-CTTCCGTTGCTTCACTCAATCGGATGCGAAGGAAGTAAGTTT 179
| ||| ||||||||||| || |||||||||| ||||||| || ||||||||||||||||
Sbjct 207 AGAGCTAAACCTAATTCGCT-CCGTTGCTTCGCTCAATCAGAAACGAAGGAAGTAAGTTT 265
Query 180 ATCTGAGAAAGAAGAACGATCTCCGTTTGACATCAATCTCGCCGTTATCCTCGCTGGTTT 239
| |||||||||| ||||| |||||||| || ||||||||||||||||| |||||||||||
Sbjct 266 ACCTGAGAAAGATGAACGTTCTCCGTTCGATATCAATCTCGCCGTTATTCTCGCTGGTTT 325
Query 240 TGCTTTCGAATCCTATGCTTCACCTCCGG 268
||||||||||||||| |||||||||||||
Sbjct 326 TGCTTTCGAATCCTACGCTTCACCTCCGG 354
Score = 255 bits (138), Expect = 1e-66
Identities = 148/153 (97%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 335 GGACAAAAGAGCCAAAATGGAACGAAGACTTTGTTTTTAATATCAAGCTACCTCCTGCAA 394
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 688 GGACAAAAGAGCCGAAATGGAACGAAGACTTTGTTTTTAATATCAAGCTGCCTCCTGCAA 747
Query 395 AAAAGATAGAGATTGCAGCTTGGGATGCAAACCTTGTTACCCCACATAAACGGATGGGGA 454
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 748 AAAAGATAGAGATTGCAGCTTGGGATGCAAACCTTGTTACCCCGCATAAACGTATGGGGA 807
Query 455 ATTCCGAAATCAACCTGGAATGCGTTTGTGATG 487
||||||||||||||||||||| |||||||||||
Sbjct 808 ATTCCGAAATCAACCTGGAATCCGTTTGTGATG 840
Score = 122 bits (66), Expect = 1e-26
Identities = 68/69 (99%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 267 GGGAACGAGTGATCCTTATGTTGTGATGGATTTGGATGGTCAGGTTGCTAAAAGCAAAAC 326
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 595 GGGAACGAGTGATCCTTATGTGGTGATGGATTTGGATGGTCAGGTTGCTAAAAGCAAAAC 654
Query 327 CAAATGGGG 335
|||||||||
Sbjct 655 CAAATGGGG 663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125768526101
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5