BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493562
Length=578
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13560.1 | Symbols: UNE15 | Late embryogenesis abundant prot... 861 0.0
> AT4G13560.1 | Symbols: UNE15 | Late embryogenesis abundant protein
(LEA) family protein | chr4:7879561-7880383 REVERSE LENGTH=605
Length=605
Score = 861 bits (466), Expect = 0.0
Identities = 544/580 (94%), Gaps = 12/580 (2%)
Strand=Plus/Plus
Query 1 ATCAATCAAAGCTAAAAGAACTTA--CTCTCACAAACTTCAAATCCTCCTCTATCCCTTT 58
|||||||||||||||||||||||| |||||||||||||||||||||| || |||| |||
Sbjct 1 ATCAATCAAAGCTAAAAGAACTTATTCTCTCACAAACTTCAAATCCTCATC-ATCCTTTT 59
Query 59 TGAATCATTAATCATGTCGCAACAACAATTCAACGCTGGCCAGAACAGAGGCCAAGCTCA 118
|||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 60 TGAATCATCAATCATGTCGCAACAACAATTCAACGCCGGACAGAACAGAGGCCAAGCTCA 119
Query 119 AGAGAAAGCTGAGCAATGGACCGAGTCCGCGAAGCAAACCGCACAGTCCGCACGTGATAA 178
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||
Sbjct 120 AGAGAAAGCTGAGCAATGGACCGAGTCTGCGAAGCAAACCGCACAGTCCGCATGTGACAA 179
Query 179 GACTGCTGATTTGACACAATCAGCACGTGACAAGGCTGCAGATTTGACACAATCAGCTCG 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AACTGCTGATTTGACACAATCAGCACGTGACAAGGCTGCAGATTTGACACAATCAGCTCG 239
Query 239 TGACAAGTCCGCTGATGGATCTCATTCCGCTAACAAATCTGCACAACATAACCAGGAACA 298
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGACAAAACCGCTGATGGATCTCATTCCGCTAACAAATCTGCACAACATAACCAGGAACA 299
Query 299 AGCTGCTGGTTTATTTGGCCAGACCGGTGAATCAGTTAAAAACATGGCTCAAGGTGCTCT 358
||| ||||||||||| |||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 300 AGCCGCTGGTTTATTCGGCCAGACCGGTGAATCAGTGAAGAACATGGCTCAGGGTGCTCT 359
Query 359 TGATGGTGTGAAGAACAGTCTTGGCATGAACGAGAAGAAATGAGAATATGAATACTCATA 418
||| ||||||||||||||||||||||||||||||||||||||||||| | | |||| |
Sbjct 360 TGACGGTGTGAAGAACAGTCTTGGCATGAACGAGAAGAAATGAGAATTT-A-TACT--T- 414
Query 419 TTTCTCACCTATTTTATTTAAAATATATATGAATAATTTCTTGTTTTTTGAAATTTTGGG 478
|||| |||||||||||||||||| |||||||||||||||||||| ||| |||||||
Sbjct 415 ---CTCAACTATTTTATTTAAAATATTTATGAATAATTTCTTGTTTTG-GAAGTTTTGGG 470
Query 479 TTTCTCCAAATTATGTTTGTAATAAGATTATTTGTTTTGAAAGATTTTGTGATCATGTGA 538
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 471 TTTCTCCAAATTATGTTTGTAATAAGATTATTTGTTTTGAAAGGTTTTGTGATCATGTAA 530
Query 539 TCCGAAATCTGAGATGTAATAAGATGTTGTAACATCACAG 578
||||||||||||||||||||||||||||||||||||||||
Sbjct 531 TCCGAAATCTGAGATGTAATAAGATGTTGTAACATCACAG 570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27779483291
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5